Strain Fitness in Sphingobium sp. HT1-2 around GFF533

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF531 and GFF532 overlap by 4 nucleotidesGFF532 and GFF533 are separated by 10 nucleotidesGFF533 and GFF534 are separated by 13 nucleotidesGFF534 and GFF535 overlap by 1 nucleotides GFF531 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 528,311 to 529,672 GFF531 GFF532 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 529,669 to 530,184 GFF532 GFF533 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 530,195 to 530,980 GFF533 GFF534 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 530,994 to 531,701 GFF534 GFF535 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 531,701 to 532,348 GFF535 Position (kb) 530 531Strain fitness (log2 ratio) -2 -1 0 1 2 3at 529.200 kb on + strand, within GFF531at 529.200 kb on + strand, within GFF531at 529.230 kb on + strand, within GFF531at 529.230 kb on + strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.239 kb on - strand, within GFF531at 529.262 kb on + strand, within GFF531at 529.275 kb on + strand, within GFF531at 529.286 kb on + strand, within GFF531at 529.302 kb on - strand, within GFF531at 529.328 kb on - strand, within GFF531at 529.333 kb on - strand, within GFF531at 529.341 kb on - strand, within GFF531at 529.383 kb on + strand, within GFF531at 529.387 kb on - strand, within GFF531at 529.390 kb on + strand, within GFF531at 529.402 kb on + strand, within GFF531at 529.410 kb on - strand, within GFF531at 529.417 kb on - strand, within GFF531at 529.435 kb on + strand, within GFF531at 529.442 kb on - strand, within GFF531at 529.442 kb on - strand, within GFF531at 529.445 kb on + strand, within GFF531at 529.445 kb on + strand, within GFF531at 529.453 kb on - strand, within GFF531at 529.457 kb on - strand, within GFF531at 529.488 kb on - strand, within GFF531at 529.496 kb on - strand, within GFF531at 529.557 kb on - strandat 529.564 kb on + strandat 529.572 kb on + strandat 529.577 kb on + strandat 529.579 kb on - strandat 529.582 kb on + strandat 529.595 kb on + strandat 529.595 kb on + strandat 529.595 kb on + strandat 529.603 kb on - strandat 529.603 kb on - strandat 529.616 kb on + strandat 529.617 kb on + strandat 529.667 kb on + strandat 529.675 kb on - strandat 529.678 kb on - strandat 529.699 kb on + strandat 529.702 kb on - strandat 529.704 kb on + strandat 529.706 kb on + strandat 529.707 kb on - strandat 529.707 kb on - strandat 529.739 kb on + strand, within GFF532at 529.739 kb on + strand, within GFF532at 529.747 kb on - strand, within GFF532at 529.752 kb on - strand, within GFF532at 529.752 kb on - strand, within GFF532at 529.768 kb on + strand, within GFF532at 529.775 kb on - strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.787 kb on + strand, within GFF532at 529.795 kb on - strand, within GFF532at 529.795 kb on - strand, within GFF532at 529.815 kb on + strand, within GFF532at 529.815 kb on + strand, within GFF532at 529.823 kb on - strand, within GFF532at 529.825 kb on + strand, within GFF532at 529.828 kb on - strand, within GFF532at 529.842 kb on - strand, within GFF532at 529.869 kb on + strand, within GFF532at 529.869 kb on + strand, within GFF532at 529.880 kb on - strand, within GFF532at 529.880 kb on - strand, within GFF532at 529.891 kb on + strand, within GFF532at 529.891 kb on + strand, within GFF532at 529.891 kb on + strand, within GFF532at 529.892 kb on + strand, within GFF532at 529.899 kb on - strand, within GFF532at 529.899 kb on - strand, within GFF532at 529.899 kb on - strand, within GFF532at 529.899 kb on - strand, within GFF532at 529.900 kb on - strand, within GFF532at 529.914 kb on + strand, within GFF532at 529.914 kb on + strand, within GFF532at 529.937 kb on - strand, within GFF532at 529.958 kb on - strand, within GFF532at 529.958 kb on - strand, within GFF532at 530.024 kb on - strand, within GFF532at 530.033 kb on + strand, within GFF532at 530.033 kb on + strand, within GFF532at 530.035 kb on - strand, within GFF532at 530.102 kb on - strand, within GFF532at 530.180 kb on + strandat 530.224 kb on + strandat 530.230 kb on + strandat 530.232 kb on - strandat 530.232 kb on - strandat 530.232 kb on - strandat 530.239 kb on - strandat 530.246 kb on + strandat 530.251 kb on + strandat 530.251 kb on + strandat 530.254 kb on - strandat 530.254 kb on - strandat 530.254 kb on - strandat 530.259 kb on - strandat 530.269 kb on + strandat 530.275 kb on - strand, within GFF533at 530.275 kb on - strand, within GFF533at 530.290 kb on - strand, within GFF533at 530.292 kb on + strand, within GFF533at 530.306 kb on - strand, within GFF533at 530.308 kb on + strand, within GFF533at 530.352 kb on - strand, within GFF533at 530.352 kb on - strand, within GFF533at 530.357 kb on + strand, within GFF533at 530.390 kb on + strand, within GFF533at 530.390 kb on + strand, within GFF533at 530.398 kb on - strand, within GFF533at 530.398 kb on - strand, within GFF533at 530.416 kb on + strand, within GFF533at 530.424 kb on - strand, within GFF533at 530.424 kb on - strand, within GFF533at 530.438 kb on + strand, within GFF533at 530.446 kb on - strand, within GFF533at 530.483 kb on + strand, within GFF533at 530.494 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.511 kb on + strand, within GFF533at 530.516 kb on + strand, within GFF533at 530.516 kb on + strand, within GFF533at 530.524 kb on - strand, within GFF533at 530.550 kb on + strand, within GFF533at 530.558 kb on - strand, within GFF533at 530.558 kb on - strand, within GFF533at 530.560 kb on + strand, within GFF533at 530.571 kb on + strand, within GFF533at 530.589 kb on + strand, within GFF533at 530.597 kb on - strand, within GFF533at 530.607 kb on - strand, within GFF533at 530.622 kb on - strand, within GFF533at 530.626 kb on + strand, within GFF533at 530.641 kb on - strand, within GFF533at 530.656 kb on + strand, within GFF533at 530.658 kb on - strand, within GFF533at 530.674 kb on + strand, within GFF533at 530.674 kb on + strand, within GFF533at 530.683 kb on - strand, within GFF533at 530.687 kb on + strand, within GFF533at 530.695 kb on - strand, within GFF533at 530.715 kb on + strand, within GFF533at 530.722 kb on + strand, within GFF533at 530.758 kb on + strand, within GFF533at 530.760 kb on + strand, within GFF533at 530.763 kb on + strand, within GFF533at 530.766 kb on - strand, within GFF533at 530.768 kb on + strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.793 kb on - strand, within GFF533at 530.805 kb on + strand, within GFF533at 530.806 kb on - strand, within GFF533at 530.818 kb on + strand, within GFF533at 530.826 kb on - strand, within GFF533at 530.852 kb on + strand, within GFF533at 530.893 kb on + strand, within GFF533at 530.916 kb on + strandat 530.916 kb on + strandat 530.921 kb on + strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.943 kb on + strandat 530.943 kb on + strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.955 kb on - strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.991 kb on - strandat 531.033 kb on + strandat 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.088 kb on + strand, within GFF534at 531.091 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.220 kb on + strand, within GFF534at 531.228 kb on - strand, within GFF534at 531.235 kb on + strand, within GFF534at 531.243 kb on - strand, within GFF534at 531.245 kb on + strand, within GFF534at 531.291 kb on - strand, within GFF534at 531.345 kb on + strand, within GFF534at 531.367 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.444 kb on + strand, within GFF534at 531.447 kb on - strand, within GFF534at 531.452 kb on - strand, within GFF534at 531.463 kb on - strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.522 kb on - strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.550 kb on + strand, within GFF534at 531.553 kb on - strand, within GFF534at 531.554 kb on + strand, within GFF534at 531.581 kb on + strand, within GFF534at 531.584 kb on - strand, within GFF534at 531.587 kb on + strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.601 kb on - strand, within GFF534at 531.612 kb on + strand, within GFF534at 531.636 kb on + strandat 531.644 kb on - strandat 531.647 kb on - strandat 531.777 kb on - strand, within GFF535at 531.810 kb on - strand, within GFF535at 531.822 kb on + strand, within GFF535at 531.824 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.896 kb on - strand, within GFF535at 531.898 kb on + strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.906 kb on - strand, within GFF535at 531.932 kb on - strand, within GFF535at 531.956 kb on + strand, within GFF535at 531.963 kb on + strand, within GFF535at 531.964 kb on - strand, within GFF535

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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529,200 + GFF531 0.65 +0.7
529,200 + GFF531 0.65 +1.1
529,230 + GFF531 0.67 -0.4
529,230 + GFF531 0.67 -0.1
529,238 - GFF531 0.68 +1.7
529,238 - GFF531 0.68 -0.5
529,238 - GFF531 0.68 -0.8
529,238 - GFF531 0.68 +0.6
529,239 - GFF531 0.68 -1.9
529,262 + GFF531 0.70 +0.4
529,275 + GFF531 0.71 +0.6
529,286 + GFF531 0.72 -0.8
529,302 - GFF531 0.73 +0.5
529,328 - GFF531 0.75 +0.8
529,333 - GFF531 0.75 +0.5
529,341 - GFF531 0.76 +0.7
529,383 + GFF531 0.79 -0.0
529,387 - GFF531 0.79 +1.1
529,390 + GFF531 0.79 +2.2
529,402 + GFF531 0.80 +0.8
529,410 - GFF531 0.81 +0.1
529,417 - GFF531 0.81 -2.2
529,435 + GFF531 0.83 -0.4
529,442 - GFF531 0.83 -0.8
529,442 - GFF531 0.83 +1.2
529,445 + GFF531 0.83 -1.2
529,445 + GFF531 0.83 -0.5
529,453 - GFF531 0.84 +0.1
529,457 - GFF531 0.84 -1.0
529,488 - GFF531 0.86 -0.2
529,496 - GFF531 0.87 -1.6
529,557 - -1.0
529,564 + -1.1
529,572 + -1.2
529,577 + +0.1
529,579 - +1.0
529,582 + -0.8
529,595 + +0.4
529,595 + +0.1
529,595 + +1.2
529,603 - +0.5
529,603 - +0.8
529,616 + -1.5
529,617 + -0.6
529,667 + +1.4
529,675 - -0.4
529,678 - +0.1
529,699 + +0.4
529,702 - -0.4
529,704 + +1.8
529,706 + -1.4
529,707 - -0.5
529,707 - -0.4
529,739 + GFF532 0.14 +0.6
529,739 + GFF532 0.14 -0.6
529,747 - GFF532 0.15 -0.1
529,752 - GFF532 0.16 +1.4
529,752 - GFF532 0.16 +0.8
529,768 + GFF532 0.19 +3.4
529,775 - GFF532 0.21 +0.8
529,787 + GFF532 0.23 +0.1
529,787 + GFF532 0.23 -1.5
529,787 + GFF532 0.23 +0.4
529,787 + GFF532 0.23 +0.2
529,787 + GFF532 0.23 +1.5
529,787 + GFF532 0.23 -1.6
529,795 - GFF532 0.24 +0.4
529,795 - GFF532 0.24 -0.3
529,815 + GFF532 0.28 -0.2
529,815 + GFF532 0.28 +1.2
529,823 - GFF532 0.30 -0.7
529,825 + GFF532 0.30 +0.4
529,828 - GFF532 0.31 -0.2
529,842 - GFF532 0.34 -1.2
529,869 + GFF532 0.39 -0.5
529,869 + GFF532 0.39 +0.3
529,880 - GFF532 0.41 +0.8
529,880 - GFF532 0.41 -1.6
529,891 + GFF532 0.43 -1.2
529,891 + GFF532 0.43 +1.5
529,891 + GFF532 0.43 +0.0
529,892 + GFF532 0.43 +0.8
529,899 - GFF532 0.45 -0.9
529,899 - GFF532 0.45 -0.7
529,899 - GFF532 0.45 -1.8
529,899 - GFF532 0.45 -0.2
529,900 - GFF532 0.45 -0.7
529,914 + GFF532 0.47 -1.1
529,914 + GFF532 0.47 -0.7
529,937 - GFF532 0.52 +0.1
529,958 - GFF532 0.56 +0.4
529,958 - GFF532 0.56 -1.2
530,024 - GFF532 0.69 -0.8
530,033 + GFF532 0.71 +0.3
530,033 + GFF532 0.71 +0.5
530,035 - GFF532 0.71 -1.4
530,102 - GFF532 0.84 +0.9
530,180 + -0.0
530,224 + -1.1
530,230 + -0.5
530,232 - -0.3
530,232 - -0.4
530,232 - -0.5
530,239 - -1.5
530,246 + -0.5
530,251 + -0.7
530,251 + +0.9
530,254 - -0.0
530,254 - +0.6
530,254 - -0.2
530,259 - +0.9
530,269 + +0.1
530,275 - GFF533 0.10 +0.0
530,275 - GFF533 0.10 +0.4
530,290 - GFF533 0.12 +0.6
530,292 + GFF533 0.12 -1.2
530,306 - GFF533 0.14 -0.8
530,308 + GFF533 0.14 +1.3
530,352 - GFF533 0.20 -0.1
530,352 - GFF533 0.20 +0.2
530,357 + GFF533 0.21 -1.2
530,390 + GFF533 0.25 +0.9
530,390 + GFF533 0.25 +0.1
530,398 - GFF533 0.26 +1.0
530,398 - GFF533 0.26 +0.3
530,416 + GFF533 0.28 +1.6
530,424 - GFF533 0.29 -0.2
530,424 - GFF533 0.29 -0.2
530,438 + GFF533 0.31 +1.4
530,446 - GFF533 0.32 +0.2
530,483 + GFF533 0.37 +0.4
530,494 + GFF533 0.38 +1.3
530,496 + GFF533 0.38 +0.5
530,496 + GFF533 0.38 -0.5
530,496 + GFF533 0.38 -0.4
530,504 - GFF533 0.39 +0.4
530,504 - GFF533 0.39 +0.2
530,504 - GFF533 0.39 +1.0
530,511 + GFF533 0.40 +1.2
530,516 + GFF533 0.41 -0.2
530,516 + GFF533 0.41 -0.7
530,524 - GFF533 0.42 -1.1
530,550 + GFF533 0.45 +0.1
530,558 - GFF533 0.46 -0.3
530,558 - GFF533 0.46 -0.3
530,560 + GFF533 0.46 +0.0
530,571 + GFF533 0.48 -1.0
530,589 + GFF533 0.50 -0.6
530,597 - GFF533 0.51 +0.2
530,607 - GFF533 0.52 -1.5
530,622 - GFF533 0.54 +0.5
530,626 + GFF533 0.55 -0.8
530,641 - GFF533 0.57 -0.8
530,656 + GFF533 0.59 -0.3
530,658 - GFF533 0.59 -0.4
530,674 + GFF533 0.61 +0.1
530,674 + GFF533 0.61 -0.8
530,683 - GFF533 0.62 +0.5
530,687 + GFF533 0.63 +1.4
530,695 - GFF533 0.64 +0.5
530,715 + GFF533 0.66 +0.4
530,722 + GFF533 0.67 +2.1
530,758 + GFF533 0.72 -0.6
530,760 + GFF533 0.72 -0.5
530,763 + GFF533 0.72 -0.0
530,766 - GFF533 0.73 -0.4
530,768 + GFF533 0.73 -2.0
530,771 - GFF533 0.73 +0.9
530,771 - GFF533 0.73 +1.3
530,771 - GFF533 0.73 -0.3
530,771 - GFF533 0.73 +1.6
530,771 - GFF533 0.73 +2.1
530,771 - GFF533 0.73 +2.1
530,771 - GFF533 0.73 +1.6
530,793 - GFF533 0.76 +0.1
530,805 + GFF533 0.78 +1.4
530,806 - GFF533 0.78 -1.0
530,818 + GFF533 0.79 -2.0
530,826 - GFF533 0.80 -1.1
530,852 + GFF533 0.84 -0.1
530,893 + GFF533 0.89 +1.6
530,916 + +1.8
530,916 + -0.5
530,921 + +2.6
530,924 - +0.2
530,924 - -0.0
530,924 - +0.2
530,943 + +2.0
530,943 + +0.6
530,951 - -1.6
530,951 - -1.2
530,951 - -0.2
530,955 - -0.7
530,956 - -0.9
530,956 - -0.5
530,991 - -0.7
531,033 + -2.2
531,070 + GFF534 0.11 -1.8
531,070 + GFF534 0.11 -0.2
531,070 + GFF534 0.11 +0.2
531,070 + GFF534 0.11 -1.1
531,070 + GFF534 0.11 -0.6
531,078 - GFF534 0.12 +0.2
531,078 - GFF534 0.12 -0.3
531,078 - GFF534 0.12 +0.4
531,078 - GFF534 0.12 -0.9
531,078 - GFF534 0.12 +0.1
531,088 + GFF534 0.13 -1.6
531,091 + GFF534 0.14 -0.6
531,169 + GFF534 0.25 -1.4
531,169 + GFF534 0.25 +0.3
531,220 + GFF534 0.32 +0.1
531,228 - GFF534 0.33 +2.6
531,235 + GFF534 0.34 +0.2
531,243 - GFF534 0.35 +0.7
531,245 + GFF534 0.35 -1.6
531,291 - GFF534 0.42 -0.0
531,345 + GFF534 0.50 -1.8
531,367 + GFF534 0.53 +1.7
531,439 + GFF534 0.63 -0.3
531,439 + GFF534 0.63 -0.4
531,439 + GFF534 0.63 -0.6
531,439 + GFF534 0.63 +2.3
531,444 + GFF534 0.64 -0.8
531,447 - GFF534 0.64 -1.1
531,452 - GFF534 0.65 -1.0
531,463 - GFF534 0.66 -0.9
531,497 + GFF534 0.71 -0.4
531,497 + GFF534 0.71 +1.6
531,497 + GFF534 0.71 -2.0
531,497 + GFF534 0.71 +1.2
531,505 - GFF534 0.72 -1.4
531,505 - GFF534 0.72 +0.2
531,522 - GFF534 0.75 -0.5
531,545 + GFF534 0.78 +0.0
531,545 + GFF534 0.78 -0.4
531,545 + GFF534 0.78 +0.7
531,550 + GFF534 0.79 -1.9
531,553 - GFF534 0.79 +0.3
531,554 + GFF534 0.79 +1.8
531,581 + GFF534 0.83 -1.7
531,584 - GFF534 0.83 +0.1
531,587 + GFF534 0.84 +1.1
531,594 - GFF534 0.85 +1.1
531,594 - GFF534 0.85 -0.2
531,601 - GFF534 0.86 +1.1
531,612 + GFF534 0.87 +0.3
531,636 + -1.4
531,644 - +0.2
531,647 - +0.2
531,777 - GFF535 0.12 +1.3
531,810 - GFF535 0.17 -1.0
531,822 + GFF535 0.19 +1.1
531,824 - GFF535 0.19 -1.1
531,873 - GFF535 0.27 -0.3
531,873 - GFF535 0.27 +1.4
531,887 + GFF535 0.29 -0.3
531,887 + GFF535 0.29 +1.0
531,888 + GFF535 0.29 -1.0
531,888 + GFF535 0.29 -0.6
531,896 - GFF535 0.30 -0.5
531,898 + GFF535 0.30 +0.6
531,901 - GFF535 0.31 +1.7
531,901 - GFF535 0.31 -1.1
531,906 - GFF535 0.32 +0.9
531,932 - GFF535 0.36 +1.3
531,956 + GFF535 0.39 +0.9
531,963 + GFF535 0.40 -0.0
531,964 - GFF535 0.41 +0.1

Or see this region's nucleotide sequence