Strain Fitness in Sphingobium sp. HT1-2 around GFF5297

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,287,023	+		GFF5296	0.51	+0.0
5,287,023	+		GFF5296	0.51	-0.0
5,287,028	+		GFF5296	0.52	-2.3
5,287,028	+		GFF5296	0.52	-1.0
5,287,028	+		GFF5296	0.52	-0.7
5,287,028	+		GFF5296	0.52	-1.1
5,287,031	-		GFF5296	0.52	-1.1
5,287,031	-		GFF5296	0.52	-0.9
5,287,031	-		GFF5296	0.52	-0.3
5,287,031	-		GFF5296	0.52	+0.1
5,287,033	+		GFF5296	0.52	-0.9
5,287,033	+		GFF5296	0.52	-0.9
5,287,033	+		GFF5296	0.52	-1.4
5,287,034	-		GFF5296	0.52	+0.1
5,287,036	-		GFF5296	0.53	+0.1
5,287,036	-		GFF5296	0.53	-0.8
5,287,036	-		GFF5296	0.53	-1.8
5,287,036	-		GFF5296	0.53	-0.5
5,287,038	+		GFF5296	0.53	-1.8
5,287,038	+		GFF5296	0.53	-0.5
5,287,046	+		GFF5296	0.53	-0.5
5,287,046	+		GFF5296	0.53	-1.9
5,287,046	+		GFF5296	0.53	-1.1
5,287,046	+		GFF5296	0.53	-1.6
5,287,046	+		GFF5296	0.53	-0.2
5,287,046	+		GFF5296	0.53	-1.4
5,287,054	-		GFF5296	0.54	+0.5
5,287,054	-		GFF5296	0.54	+0.4
5,287,054	-		GFF5296	0.54	-0.2
5,287,103	-		GFF5296	0.58	-0.1
5,287,103	-		GFF5296	0.58	-0.4
5,287,103	-		GFF5296	0.58	-0.8
5,287,115	-		GFF5296	0.59	+0.8
5,287,120	+		GFF5296	0.60	-1.2
5,287,130	-		GFF5296	0.60	-1.7
5,287,144	-		GFF5296	0.62	+0.2
5,287,161	-		GFF5296	0.63	+0.7
5,287,167	+		GFF5296	0.64	-1.2
5,287,174	+		GFF5296	0.64	+0.3
5,287,184	+		GFF5296	0.65	-0.4
5,287,184	+		GFF5296	0.65	-0.1
5,287,184	+		GFF5296	0.65	+0.9
5,287,184	+		GFF5296	0.65	+0.4
5,287,184	+		GFF5296	0.65	-1.2
5,287,184	+		GFF5296	0.65	-1.9
5,287,184	+		GFF5296	0.65	-1.0
5,287,184	+		GFF5296	0.65	-1.1
5,287,184	+		GFF5296	0.65	-1.0
5,287,184	+		GFF5296	0.65	+0.3
5,287,192	-		GFF5296	0.66	-1.3
5,287,192	-		GFF5296	0.66	-1.2
5,287,192	-		GFF5296	0.66	-0.1
5,287,192	-		GFF5296	0.66	-0.7
5,287,192	-		GFF5296	0.66	-0.6
5,287,192	-		GFF5296	0.66	-0.9
5,287,212	+		GFF5296	0.67	-1.0
5,287,219	+		GFF5296	0.68	-1.3
5,287,220	+		GFF5296	0.68	-1.5
5,287,220	+		GFF5296	0.68	-1.4
5,287,226	+		GFF5296	0.69	-0.2
5,287,226	+		GFF5296	0.69	-1.5
5,287,227	+		GFF5296	0.69	-2.1
5,287,227	-		GFF5296	0.69	-1.0
5,287,227	-		GFF5296	0.69	+0.2
5,287,228	-		GFF5296	0.69	-1.6
5,287,231	+		GFF5296	0.69	-1.2
5,287,234	-		GFF5296	0.69	-0.6
5,287,322	+		GFF5296	0.77	-0.9
5,287,322	+		GFF5296	0.77	-1.4
5,287,322	+		GFF5296	0.77	-0.3
5,287,322	+		GFF5296	0.77	-2.4
5,287,330	-		GFF5296	0.77	-1.5
5,287,330	-		GFF5296	0.77	-0.8
5,287,332	+		GFF5296	0.77	+0.2
5,287,404	+		GFF5296	0.84	-1.0
5,287,412	-		GFF5296	0.84	-0.6
5,287,412	-		GFF5296	0.84	+0.7
5,287,449	+		GFF5296	0.87	-0.7
5,287,457	-		GFF5296	0.88	-1.8
5,287,513	+				-0.7
5,287,513	+				-0.7
5,287,874	+				-0.1
5,287,874	+				-2.5
5,287,882	-				-0.6
5,287,899	+				-0.9
5,287,899	-				-3.0
5,287,907	-				-0.9
5,287,936	-				-1.8
5,287,944	+				-2.1
5,287,963	+				-1.5
5,287,968	+				-0.2
5,287,968	+				-1.9
5,287,971	-				-0.6
5,287,971	-				-0.3
5,287,978	+				-0.3
5,287,986	-				-0.5
5,287,986	-				-0.8
5,287,988	-				-1.0
5,287,988	-				-0.7
5,287,988	-				-1.7
5,287,988	-				-1.2
5,288,029	-				+0.3
5,288,029	-				+0.4
5,288,030	-				-1.7
5,288,070	+				-1.5
5,288,070	+				-1.2
5,288,139	+		GFF5297	0.15	-1.0
5,288,154	-		GFF5297	0.16	+0.1
5,288,160	+		GFF5297	0.17	-2.7
5,288,168	-		GFF5297	0.18	-1.3
5,288,170	+		GFF5297	0.18	-0.4
5,288,178	-		GFF5297	0.19	-0.7
5,288,186	-		GFF5297	0.20	-1.5
5,288,186	-		GFF5297	0.20	-0.5
5,288,186	-		GFF5297	0.20	-0.1
5,288,186	-		GFF5297	0.20	-0.4
5,288,186	-		GFF5297	0.20	-0.2
5,288,186	-		GFF5297	0.20	-0.9
5,288,193	+		GFF5297	0.21	-0.8
5,288,201	-		GFF5297	0.22	-1.4
5,288,206	+		GFF5297	0.23	-2.2
5,288,235	-		GFF5297	0.27	-1.0
5,288,245	+		GFF5297	0.28	-1.6
5,288,252	+		GFF5297	0.29	+0.4
5,288,253	+		GFF5297	0.29	-1.7
5,288,253	-		GFF5297	0.29	-1.6
5,288,253	-		GFF5297	0.29	-0.0
5,288,271	-		GFF5297	0.31	-0.4
5,288,271	-		GFF5297	0.31	-0.1
5,288,271	-		GFF5297	0.31	+0.9
5,288,289	+		GFF5297	0.33	-1.1
5,288,294	+		GFF5297	0.34	-2.1
5,288,297	-		GFF5297	0.34	-0.7
5,288,299	+		GFF5297	0.35	-0.6
5,288,313	-		GFF5297	0.36	-0.4
5,288,329	+		GFF5297	0.38	-1.3
5,288,329	+		GFF5297	0.38	-1.3
5,288,329	+		GFF5297	0.38	-2.3
5,288,329	+		GFF5297	0.38	-0.2
5,288,329	+		GFF5297	0.38	+0.0
5,288,329	+		GFF5297	0.38	-0.4
5,288,337	+		GFF5297	0.39	-1.4
5,288,337	+		GFF5297	0.39	+0.4
5,288,337	-		GFF5297	0.39	-1.4
5,288,337	-		GFF5297	0.39	-1.2
5,288,345	-		GFF5297	0.40	+0.3
5,288,355	-		GFF5297	0.42	-0.7
5,288,355	-		GFF5297	0.42	+0.5
5,288,360	+		GFF5297	0.42	-0.7
5,288,363	+		GFF5297	0.43	-1.2
5,288,363	-		GFF5297	0.43	-0.5
5,288,371	-		GFF5297	0.44	-1.1
5,288,373	-		GFF5297	0.44	+0.4
5,288,373	-		GFF5297	0.44	-1.3
5,288,373	-		GFF5297	0.44	-1.3
5,288,388	+		GFF5297	0.46	-1.3
5,288,396	+		GFF5297	0.47	-1.5
5,288,430	+		GFF5297	0.51	-0.9
5,288,430	+		GFF5297	0.51	+0.1
5,288,430	+		GFF5297	0.51	-1.2
5,288,431	+		GFF5297	0.51	+0.0
5,288,431	+		GFF5297	0.51	-0.8
5,288,431	+		GFF5297	0.51	+0.0
5,288,431	+		GFF5297	0.51	-1.9
5,288,439	-		GFF5297	0.52	-1.2
5,288,439	-		GFF5297	0.52	-1.4
5,288,449	-		GFF5297	0.53	-2.3
5,288,449	-		GFF5297	0.53	-1.5
5,288,470	+		GFF5297	0.56	-0.0
5,288,481	+		GFF5297	0.57	-0.5
5,288,488	+		GFF5297	0.58	+0.0
5,288,496	+		GFF5297	0.59	-0.4
5,288,499	-		GFF5297	0.60	-1.2
5,288,515	+		GFF5297	0.62	-1.1
5,288,521	+		GFF5297	0.62	-0.9
5,288,521	+		GFF5297	0.62	-1.4
5,288,521	+		GFF5297	0.62	+0.1
5,288,529	-		GFF5297	0.63	-0.9
5,288,531	-		GFF5297	0.64	-1.1
5,288,547	+		GFF5297	0.66	-0.1
5,288,547	+		GFF5297	0.66	+0.1
5,288,547	+		GFF5297	0.66	+0.2
5,288,555	-		GFF5297	0.67	-0.6
5,288,555	-		GFF5297	0.67	-1.0
5,288,556	+		GFF5297	0.67	+0.1
5,288,564	+		GFF5297	0.68	-1.1
5,288,564	+		GFF5297	0.68	-1.7
5,288,564	+		GFF5297	0.68	-0.9
5,288,564	+		GFF5297	0.68	-2.1
5,288,572	-		GFF5297	0.69	+0.1
5,288,572	-		GFF5297	0.69	-0.6
5,288,579	+		GFF5297	0.70	-0.7
5,288,579	+		GFF5297	0.70	+0.8
5,288,602	+		GFF5297	0.73	-2.9
5,288,602	+		GFF5297	0.73	-1.1
5,288,602	+		GFF5297	0.73	+0.3
5,288,602	+		GFF5297	0.73	-1.2
5,288,602	+		GFF5297	0.73	-1.3
5,288,602	+		GFF5297	0.73	-0.2
5,288,602	+		GFF5297	0.73	-0.2
5,288,602	+		GFF5297	0.73	-1.9
5,288,602	+		GFF5297	0.73	+0.6
5,288,602	+		GFF5297	0.73	-0.6
5,288,602	+		GFF5297	0.73	-2.0
5,288,602	+		GFF5297	0.73	-2.0
5,288,610	-		GFF5297	0.74	-0.7
5,288,610	-		GFF5297	0.74	-1.2
5,288,610	-		GFF5297	0.74	-0.7
5,288,610	-		GFF5297	0.74	-0.2
5,288,610	-		GFF5297	0.74	-0.4
5,288,612	+		GFF5297	0.74	-1.8
5,288,616	+		GFF5297	0.74	-0.7
5,288,640	-		GFF5297	0.77	-1.5
5,288,650	+		GFF5297	0.79	-0.7
5,288,650	+		GFF5297	0.79	-2.1
5,288,658	-		GFF5297	0.80	-0.4
5,288,658	-		GFF5297	0.80	-0.4
5,288,658	-		GFF5297	0.80	+0.4
5,288,662	-		GFF5297	0.80	-1.1
5,288,664	+		GFF5297	0.80	+1.9
5,288,664	+		GFF5297	0.80	-0.6
5,288,664	+		GFF5297	0.80	-1.9
5,288,664	+		GFF5297	0.80	-0.2
5,288,664	+		GFF5297	0.80	-0.3
5,288,664	-		GFF5297	0.80	-0.7
5,288,669	+		GFF5297	0.81	-0.4
5,288,669	+		GFF5297	0.81	-1.2
5,288,669	+		GFF5297	0.81	-0.6
5,288,672	-		GFF5297	0.81	-1.0
5,288,672	-		GFF5297	0.81	-0.2
5,288,677	-		GFF5297	0.82	+1.6
5,288,677	-		GFF5297	0.82	+0.3
5,288,681	+		GFF5297	0.82	+1.1
5,288,681	+		GFF5297	0.82	-0.2
5,288,681	+		GFF5297	0.82	+0.1
5,288,681	+		GFF5297	0.82	-0.2
5,288,681	+		GFF5297	0.82	-1.1
5,288,681	+		GFF5297	0.82	-0.7
5,288,681	+		GFF5297	0.82	+0.2
5,288,683	+		GFF5297	0.83	-1.4
5,288,683	+		GFF5297	0.83	-1.5
5,288,689	-		GFF5297	0.83	-0.3
5,288,689	-		GFF5297	0.83	-0.3
5,288,689	-		GFF5297	0.83	-0.2
5,288,689	-		GFF5297	0.83	-1.2
5,288,689	-		GFF5297	0.83	-0.3
5,288,689	-		GFF5297	0.83	+0.0
5,288,689	-		GFF5297	0.83	-0.2
5,288,689	-		GFF5297	0.83	-1.2
5,288,689	-		GFF5297	0.83	+0.6
5,288,689	-		GFF5297	0.83	-0.5
5,288,689	-		GFF5297	0.83	-2.9
5,288,689	-		GFF5297	0.83	-1.7
5,288,689	-		GFF5297	0.83	-1.2
5,288,689	-		GFF5297	0.83	-0.4
5,288,689	-		GFF5297	0.83	+0.7
5,288,691	-		GFF5297	0.84	-0.7
5,288,691	-		GFF5297	0.84	+1.0
5,288,691	-		GFF5297	0.84	-1.9
5,288,700	+		GFF5297	0.85	+0.6
5,288,719	+		GFF5297	0.87	-1.1
5,288,733	+		GFF5297	0.89	-0.2
5,288,738	+		GFF5297	0.90	-2.2
5,288,753	+				-0.7
5,288,756	-				-0.5
5,288,766	-				-1.6
5,288,779	-				-1.1
5,288,786	+				-1.5
5,288,794	-				-0.9
5,288,800	-				-0.4
5,288,810	+				-2.4
5,288,823	+				+0.0
5,288,830	+				-0.9
5,288,830	+				-0.9
5,288,830	+				-1.9
5,288,830	+				-1.2
5,288,830	+				+0.1
5,288,830	+				-0.0
5,288,830	+				+0.3
5,288,830	+				-0.0
5,288,830	+				+0.1
5,288,830	+				-2.9
5,288,830	+				-0.2
5,288,838	-				-2.2
5,288,838	-				-1.7
5,288,838	-				-0.3
5,288,838	-				-0.0
5,288,838	-				-2.1
5,288,838	-				-0.2
5,288,840	-				-0.7
5,288,843	-				-1.4
5,288,843	-				-1.5
5,288,845	+				-1.0
5,288,859	+				-1.0
5,288,864	+				-1.8
5,288,864	+				-1.3
5,288,877	+				-2.1
5,288,908	+				-2.7
5,288,909	+				-0.9
5,288,909	+				-1.7
5,288,915	-				-1.4
5,288,917	-				+0.8
5,288,925	-				-0.7
5,288,927	+				-0.5
5,288,927	+				-0.3
5,288,927	+				-1.1
5,288,927	+				+0.0
5,288,929	+				-0.1
5,288,935	-				-0.6
5,288,935	-				-1.7
5,288,935	-				-1.8
5,288,935	-				-0.3
5,288,935	-				-0.9
5,288,935	-				-1.7
5,288,935	-				-0.5
5,288,935	-				-1.0
5,288,935	-				-0.9
5,288,939	+				-2.1
5,288,940	-				-0.7
5,288,977	+				-2.6
5,288,981	+				-2.0
5,288,981	+				-0.1
5,288,984	-				+0.3
5,288,989	-				-0.7
5,288,990	-				-2.1
5,288,994	-				-0.3
5,288,997	-				-1.6
5,289,029	-				-1.9
5,289,084	-				+0.5
5,289,090	-				-1.2
5,289,101	-				+1.3
5,289,112	+				-0.3
5,289,120	-				-1.4
5,289,125	+				-0.9
5,289,125	+				+0.9
5,289,125	+				-1.9
5,289,125	+				-0.5
5,289,125	+				+0.3
5,289,125	+				-1.1
5,289,125	+				+1.6
5,289,125	+				-0.9
5,289,125	+				-0.6
5,289,125	+				-1.6
5,289,125	+				-0.7
5,289,125	+				-1.1
5,289,125	+				+0.1
5,289,125	+				-1.4
5,289,125	+				-1.2
5,289,125	+				-0.6
5,289,133	-				-0.7
5,289,133	-				-1.6
5,289,133	-				+0.2
5,289,133	-				-1.1
5,289,133	-				-0.0
5,289,133	-				-1.3
5,289,133	-				-1.1
5,289,133	-				-1.4
5,289,133	-				-0.7
5,289,133	-				+0.5
5,289,133	-				-2.6
5,289,133	-				-0.7
5,289,133	-				-2.0
5,289,133	-				-0.9
5,289,133	-				+0.2
5,289,133	-				-0.7
5,289,134	-				-1.6
5,289,146	+				-1.1
5,289,154	-				-0.7
5,289,157	+				-1.5
5,289,205	+				+0.2
5,289,205	+				+0.3
5,289,219	-				-1.3
5,289,250	-				-0.9
5,289,269	-				+0.3
5,289,312	+				+0.7
5,289,314	+				-0.0
5,289,324	+				-0.3
5,289,332	-				+0.8
5,289,332	-				-1.6
5,289,332	-				-1.7
5,289,343	+				-1.4
5,289,343	+				-1.3
5,289,369	+				+0.5
5,289,369	+				-2.4
5,289,369	+				-0.4
5,289,369	+				-1.0
5,289,369	+				-0.6
5,289,369	+				+0.1
5,289,377	-				-0.3
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