Strain Fitness in Sphingobium sp. HT1-2 around GFF5231

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,221,620	+		GFF5229	0.14	-1.2
5,221,628	-		GFF5229	0.16	-1.2
5,221,628	-		GFF5229	0.16	-2.0
5,221,640	+		GFF5229	0.20	-0.5
5,221,643	+		GFF5229	0.20	-0.1
5,221,648	-		GFF5229	0.22	+1.1
5,221,648	-		GFF5229	0.22	+1.5
5,221,651	-		GFF5229	0.23	-0.2
5,221,651	-		GFF5229	0.23	-0.7
5,221,651	-		GFF5229	0.23	-0.7
5,221,687	+		GFF5229	0.33	-0.1
5,221,694	-		GFF5229	0.35	-1.9
5,221,728	+		GFF5229	0.45	+0.1
5,221,738	+		GFF5229	0.48	+0.3
5,221,746	-		GFF5229	0.50	-1.1
5,221,746	-		GFF5229	0.50	+0.8
5,221,748	+		GFF5229	0.51	-0.4
5,221,756	-		GFF5229	0.53	-1.0
5,221,760	+		GFF5229	0.54	+1.5
5,221,763	-		GFF5229	0.55	-0.6
5,221,763	-		GFF5229	0.55	+0.7
5,221,778	+		GFF5229	0.59	+0.3
5,221,789	-		GFF5229	0.62	-1.0
5,221,789	-		GFF5229	0.62	-1.4
5,221,789	-		GFF5229	0.62	-1.1
5,221,814	-		GFF5229	0.70	+1.3
5,221,837	+		GFF5229	0.76	-0.4
5,221,869	+		GFF5229	0.85	-0.5
5,221,883	-		GFF5229	0.89	+0.5
5,221,883	-		GFF5229	0.89	+0.7
5,221,892	-				+0.3
5,221,893	-				-1.0
5,221,905	+				-2.0
5,221,913	-				-0.5
5,221,934	-				-0.1
5,221,944	+				-1.2
5,221,944	+				+0.7
5,221,944	+				-0.7
5,221,944	+				+0.7
5,221,947	-				-1.4
5,221,952	-				-1.6
5,221,952	-				-1.0
5,221,952	-				-1.5
5,221,952	-				-0.1
5,221,956	-				-0.1
5,221,956	-				+0.1
5,221,966	-				-1.3
5,221,979	+				+1.3
5,221,993	+		GFF5230	0.12	-0.2
5,222,035	+		GFF5230	0.25	-0.9
5,222,076	-		GFF5230	0.37	-1.9
5,222,076	-		GFF5230	0.37	+0.5
5,222,077	-		GFF5230	0.37	-0.4
5,222,085	+		GFF5230	0.39	-0.1
5,222,085	+		GFF5230	0.39	-0.3
5,222,085	+		GFF5230	0.39	-0.7
5,222,085	+		GFF5230	0.39	+0.0
5,222,085	+		GFF5230	0.39	-0.7
5,222,093	-		GFF5230	0.42	-0.7
5,222,093	-		GFF5230	0.42	+0.3
5,222,093	-		GFF5230	0.42	+0.3
5,222,101	-		GFF5230	0.44	-1.9
5,222,117	+		GFF5230	0.49	+0.4
5,222,118	+		GFF5230	0.49	+0.8
5,222,122	-		GFF5230	0.50	-0.7
5,222,126	-		GFF5230	0.51	-0.0
5,222,127	+		GFF5230	0.51	+0.5
5,222,137	+		GFF5230	0.54	+0.5
5,222,145	-		GFF5230	0.57	-0.1
5,222,176	-		GFF5230	0.66	+0.8
5,222,185	+		GFF5230	0.68	+0.8
5,222,185	+		GFF5230	0.68	+0.7
5,222,186	-		GFF5230	0.69	+0.0
5,222,190	+		GFF5230	0.70	+1.0
5,222,190	+		GFF5230	0.70	-0.6
5,222,190	+		GFF5230	0.70	-0.7
5,222,193	-		GFF5230	0.71	-0.6
5,222,193	-		GFF5230	0.71	-0.9
5,222,195	+		GFF5230	0.71	+0.2
5,222,195	+		GFF5230	0.71	-0.7
5,222,195	+		GFF5230	0.71	-1.7
5,222,209	+		GFF5230	0.75	-0.2
5,222,212	+		GFF5230	0.76	+0.2
5,222,255	+		GFF5230	0.89	-1.7
5,222,255	+		GFF5230	0.89	-0.7
5,222,297	+				+0.1
5,222,297	+				-0.1
5,222,302	+				-0.9
5,222,302	+				+0.8
5,222,302	+				+0.1
5,222,305	-				+0.4
5,222,305	-				+0.4
5,222,307	-				-1.8
5,222,310	-				-1.9
5,222,310	-				-1.3
5,222,312	+				+0.1
5,222,325	+				-0.1
5,222,342	+				+0.5
5,222,343	+				-0.3
5,222,343	+				-1.3
5,222,386	-				-0.6
5,222,386	-				-1.2
5,222,388	-				-0.9
5,222,445	+				-1.9
5,222,445	+				-1.4
5,222,452	-				-0.7
5,222,466	-				+1.2
5,222,513	+				+0.1
5,222,521	-				-1.1
5,222,542	+				-0.9
5,222,550	-				-0.1
5,222,550	-				-0.9
5,222,550	-				-0.5
5,222,552	+				-0.4
5,222,560	-				+0.9
5,222,569	-				-2.1
5,222,574	-				-0.5
5,222,581	-				+0.0
5,222,589	-				-1.6
5,222,591	+				+0.9
5,222,591	+				-2.0
5,222,594	-				+0.0
5,222,596	+				+1.0
5,222,596	+				-1.9
5,222,596	+				-1.1
5,222,596	+				-1.8
5,222,599	-				+1.1
5,222,599	-				-0.2
5,222,604	-				+1.2
5,222,604	-				+0.0
5,222,604	-				-0.9
5,222,609	-				+0.9
5,222,629	+				+0.8
5,222,639	+				+1.6
5,222,639	+				+0.7
5,222,642	-				-0.5
5,222,642	-				-2.5
5,222,645	-				-0.9
5,222,689	+				+0.0
5,222,689	+				-1.0
5,222,699	-				-0.5
5,222,699	-				-0.7
5,222,713	+				-0.2
5,222,723	-		GFF5231	0.11	-0.4
5,222,740	-		GFF5231	0.12	-1.9
5,222,753	+		GFF5231	0.13	+0.7
5,222,761	-		GFF5231	0.13	+0.9
5,222,770	+		GFF5231	0.14	+0.7
5,222,774	-		GFF5231	0.14	+0.5
5,222,787	+		GFF5231	0.15	+0.5
5,222,787	+		GFF5231	0.15	+0.8
5,222,814	-		GFF5231	0.17	+0.5
5,222,838	-		GFF5231	0.19	+0.0
5,222,849	+		GFF5231	0.20	-1.9
5,222,849	+		GFF5231	0.20	-0.7
5,222,857	-		GFF5231	0.20	+0.1
5,222,891	+		GFF5231	0.23	+1.1
5,222,896	+		GFF5231	0.23	-0.8
5,222,896	+		GFF5231	0.23	-0.8
5,222,899	-		GFF5231	0.23	-0.2
5,222,899	-		GFF5231	0.23	+1.4
5,222,899	-		GFF5231	0.23	-0.4
5,222,899	-		GFF5231	0.23	-0.9
5,222,901	+		GFF5231	0.23	+1.1
5,222,973	+		GFF5231	0.28	+0.2
5,222,975	-		GFF5231	0.29	+0.8
5,223,006	-		GFF5231	0.31	-0.3
5,223,054	-		GFF5231	0.34	-0.7
5,223,056	-		GFF5231	0.34	+1.1
5,223,065	-		GFF5231	0.35	-1.4
5,223,075	+		GFF5231	0.36	+0.4
5,223,081	-		GFF5231	0.36	+0.2
5,223,086	+		GFF5231	0.36	-1.0
5,223,143	-		GFF5231	0.40	-1.9
5,223,147	+		GFF5231	0.41	-1.0
5,223,160	-		GFF5231	0.42	+0.9
5,223,177	+		GFF5231	0.43	-0.5
5,223,189	-		GFF5231	0.44	-1.4
5,223,197	+		GFF5231	0.44	-0.9
5,223,197	+		GFF5231	0.44	+0.8
5,223,203	-		GFF5231	0.45	-0.9
5,223,216	-		GFF5231	0.46	-0.6
5,223,221	-		GFF5231	0.46	-1.1
5,223,274	-		GFF5231	0.50	-0.3
5,223,292	-		GFF5231	0.51	-1.1
5,223,307	-		GFF5231	0.52	-1.1
5,223,406	-		GFF5231	0.59	+0.3
5,223,406	-		GFF5231	0.59	-0.4
5,223,410	+		GFF5231	0.59	+0.3
5,223,446	+		GFF5231	0.62	+0.3
5,223,466	-		GFF5231	0.63	-0.9
5,223,466	-		GFF5231	0.63	+0.9
5,223,520	-		GFF5231	0.67	-0.5
5,223,531	+		GFF5231	0.68	-0.7
5,223,535	+		GFF5231	0.68	+0.8
5,223,535	+		GFF5231	0.68	-1.5
5,223,535	+		GFF5231	0.68	-0.1
5,223,543	-		GFF5231	0.69	-0.1
5,223,545	+		GFF5231	0.69	+0.1
5,223,548	-		GFF5231	0.69	-1.7
5,223,559	-		GFF5231	0.70	-0.2
5,223,559	-		GFF5231	0.70	-0.1
5,223,561	+		GFF5231	0.70	+0.5
5,223,648	+		GFF5231	0.76	-0.9
5,223,653	+		GFF5231	0.77	-1.5
5,223,656	-		GFF5231	0.77	-0.8
5,223,656	-		GFF5231	0.77	+0.4
5,223,657	+		GFF5231	0.77	+1.0
5,223,657	+		GFF5231	0.77	-0.8
5,223,657	+		GFF5231	0.77	+0.7
5,223,657	+		GFF5231	0.77	-1.2
5,223,665	-		GFF5231	0.78	-0.2
5,223,665	-		GFF5231	0.78	+0.9
5,223,665	-		GFF5231	0.78	-1.0
5,223,665	-		GFF5231	0.78	-1.2
5,223,670	-		GFF5231	0.78	+1.5
5,223,709	+		GFF5231	0.81	+0.3
5,223,717	-		GFF5231	0.81	+0.1
5,223,717	-		GFF5231	0.81	+0.1
5,223,717	-		GFF5231	0.81	-1.9
5,223,741	+		GFF5231	0.83	-0.1
5,223,741	+		GFF5231	0.83	+0.5
5,223,749	-		GFF5231	0.84	+0.4
5,223,749	-		GFF5231	0.84	+1.3
5,223,818	-		GFF5231	0.88	+1.1
5,223,818	-		GFF5231	0.88	-0.3
5,223,818	-		GFF5231	0.88	-0.0
5,223,826	-		GFF5231	0.89	+0.6
5,223,835	+		GFF5231	0.90	-0.1
5,223,843	-				-1.0
5,223,843	-				-1.9
5,223,843	-				+1.4
5,223,843	-				+0.7
5,223,889	+				-1.1
5,223,889	+				-0.5
5,223,897	-				-0.1
5,223,913	-				-0.1
5,223,923	-				+0.2
5,223,939	+				+1.0
5,223,939	+				-0.7
5,223,945	-				-1.3
5,223,945	-				-0.8
5,223,945	-				+0.3
5,223,972	+				+0.7
5,224,004	+				-0.3
5,224,011	+				+0.3
5,224,011	+				+0.2
5,224,012	-				-2.6
5,224,019	-				+0.5
5,224,019	-				+0.3
5,224,019	-				-0.9
5,224,019	-				-1.1
5,224,019	-				-0.2
5,224,020	-				-1.7
5,224,020	-				-0.1
5,224,022	+				+1.8
5,224,024	+				+0.0
5,224,030	-				-1.1
5,224,030	-				-0.9
5,224,030	-				+0.7
5,224,030	-				+0.0
5,224,047	+				+1.3
5,224,068	+				-0.5
5,224,068	+				-0.1
5,224,068	+				+0.0
5,224,073	+				-0.0
5,224,073	+				+0.1
5,224,076	-				+0.6
5,224,104	-				-1.0
5,224,137	-		GFF5232	0.11	-0.9
5,224,141	+		GFF5232	0.11	+1.2
5,224,141	+		GFF5232	0.11	-1.9
5,224,141	+		GFF5232	0.11	-0.3
5,224,141	+		GFF5232	0.11	-1.5
5,224,149	-		GFF5232	0.12	-0.7
5,224,149	-		GFF5232	0.12	-1.5
5,224,171	+		GFF5232	0.14	-0.5
5,224,171	-		GFF5232	0.14	+0.9
5,224,173	-		GFF5232	0.14	+0.0
5,224,184	-		GFF5232	0.15	-0.9
5,224,204	+		GFF5232	0.17	-0.9
5,224,205	+		GFF5232	0.17	-1.4
5,224,211	-		GFF5232	0.17	-0.5
5,224,211	-		GFF5232	0.17	+0.0
5,224,220	+		GFF5232	0.18	-1.1
5,224,220	+		GFF5232	0.18	+0.2
5,224,220	-		GFF5232	0.18	-0.2
5,224,228	-		GFF5232	0.19	-1.9
5,224,239	-		GFF5232	0.20	+1.0
5,224,239	-		GFF5232	0.20	-0.5
5,224,239	-		GFF5232	0.20	-1.8
5,224,252	+		GFF5232	0.21	-0.4
5,224,257	+		GFF5232	0.22	-1.4
5,224,304	+		GFF5232	0.26	-1.6
5,224,314	-		GFF5232	0.27	-0.3
5,224,365	+		GFF5232	0.31	-0.8
5,224,365	-		GFF5232	0.31	-0.8
5,224,368	-		GFF5232	0.31	-0.4
5,224,368	-		GFF5232	0.31	-1.8
5,224,373	+		GFF5232	0.32	+0.8
5,224,373	-		GFF5232	0.32	+0.7
5,224,378	-		GFF5232	0.32	+0.5
5,224,378	-		GFF5232	0.32	-0.2
5,224,378	-		GFF5232	0.32	-1.1
5,224,400	-		GFF5232	0.34	-0.9
5,224,414	+		GFF5232	0.35	+2.6
5,224,417	-		GFF5232	0.36	-0.8
5,224,432	-		GFF5232	0.37	-0.4
5,224,437	-		GFF5232	0.38	-1.4
5,224,437	-		GFF5232	0.38	-0.5
5,224,476	+		GFF5232	0.41	+0.3
5,224,476	+		GFF5232	0.41	-0.5
5,224,488	+		GFF5232	0.42	+0.8
5,224,498	+		GFF5232	0.43	+0.2
5,224,498	+		GFF5232	0.43	-1.2
5,224,519	+		GFF5232	0.45	-1.1
5,224,530	-		GFF5232	0.46	+0.7
5,224,537	-		GFF5232	0.46	+0.3
5,224,562	+		GFF5232	0.49	+1.2
5,224,572	+		GFF5232	0.49	-0.4
5,224,591	-		GFF5232	0.51	+0.2
5,224,607	+		GFF5232	0.53	+0.6
5,224,607	+		GFF5232	0.53	+0.5
5,224,607	+		GFF5232	0.53	+1.5
5,224,607	+		GFF5232	0.53	+0.7
5,224,607	+		GFF5232	0.53	+1.0
5,224,608	+		GFF5232	0.53	-1.8
5,224,611	+		GFF5232	0.53	-0.4
5,224,615	-		GFF5232	0.53	-0.5
5,224,615	-		GFF5232	0.53	-2.0
5,224,615	-		GFF5232	0.53	-0.4
5,224,615	-		GFF5232	0.53	-1.0
5,224,615	-		GFF5232	0.53	+0.2
5,224,615	-		GFF5232	0.53	-1.6
5,224,615	-		GFF5232	0.53	+0.6
5,224,615	-		GFF5232	0.53	-1.3
5,224,617	+		GFF5232	0.53	-0.3
5,224,619	-		GFF5232	0.54	-1.1
5,224,619	-		GFF5232	0.54	+1.4
5,224,673	+		GFF5232	0.58	+0.1
5,224,680	-		GFF5232	0.59	-0.8
5,224,691	-		GFF5232	0.60	-0.1
5,224,702	-		GFF5232	0.61	+0.2
5,224,725	-		GFF5232	0.63	+0.0
5,224,743	+		GFF5232	0.65	+0.8
5,224,743	+		GFF5232	0.65	-0.1
5,224,743	+		GFF5232	0.65	-0.9
5,224,743	+		GFF5232	0.65	+0.3
5,224,743	+		GFF5232	0.65	-1.9
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	+0.4
5,224,743	+		GFF5232	0.65	+0.6
5,224,743	+		GFF5232	0.65	-0.9
5,224,743	+		GFF5232	0.65	-0.7
5,224,743	+		GFF5232	0.65	-1.3
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	+0.0
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	+0.0
5,224,743	+		GFF5232	0.65	+1.2
5,224,743	+		GFF5232	0.65	+0.3
5,224,743	+		GFF5232	0.65	-0.3
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	-0.9
5,224,743	+		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-0.5
5,224,751	-		GFF5232	0.65	-1.2
5,224,751	-		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-0.6
5,224,751	-		GFF5232	0.65	-0.8
5,224,751	-		GFF5232	0.65	+0.1
5,224,751	-		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-2.1
5,224,751	-		GFF5232	0.65	-0.1
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