Strain Fitness in Sphingobium sp. HT1-2 around GFF5213

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,208,695	-		GFF5212	0.18	-0.5
5,208,695	-		GFF5212	0.18	-0.9
5,208,717	-		GFF5212	0.20	-1.2
5,208,733	-		GFF5212	0.21	-0.8
5,208,740	+		GFF5212	0.22	-0.6
5,208,748	-		GFF5212	0.23	-0.3
5,208,748	-		GFF5212	0.23	-0.3
5,208,748	-		GFF5212	0.23	+1.4
5,208,765	-		GFF5212	0.24	+0.3
5,208,799	+		GFF5212	0.27	+1.2
5,208,802	+		GFF5212	0.27	-1.8
5,208,804	+		GFF5212	0.27	-1.1
5,208,825	+		GFF5212	0.29	-0.3
5,208,825	+		GFF5212	0.29	-1.2
5,208,833	-		GFF5212	0.30	-1.1
5,208,847	+		GFF5212	0.31	+0.3
5,208,881	+		GFF5212	0.34	-0.2
5,208,888	-		GFF5212	0.34	-1.5
5,208,889	-		GFF5212	0.35	+0.2
5,208,945	+		GFF5212	0.39	-1.7
5,208,961	+		GFF5212	0.41	-0.1
5,208,967	+		GFF5212	0.41	+1.7
5,208,994	+		GFF5212	0.43	+1.1
5,209,002	+		GFF5212	0.44	+0.3
5,209,002	+		GFF5212	0.44	-0.9
5,209,080	-		GFF5212	0.51	-1.8
5,209,086	-		GFF5212	0.51	+0.4
5,209,117	-		GFF5212	0.54	+0.2
5,209,153	+		GFF5212	0.57	+0.3
5,209,161	-		GFF5212	0.57	+0.5
5,209,182	+		GFF5212	0.59	-0.2
5,209,186	-		GFF5212	0.59	-0.5
5,209,189	+		GFF5212	0.60	-0.5
5,209,190	-		GFF5212	0.60	+0.5
5,209,194	+		GFF5212	0.60	-0.8
5,209,211	+		GFF5212	0.62	-0.2
5,209,219	-		GFF5212	0.62	-1.2
5,209,224	+		GFF5212	0.63	-0.6
5,209,239	+		GFF5212	0.64	+0.1
5,209,245	+		GFF5212	0.64	+0.6
5,209,245	+		GFF5212	0.64	-0.2
5,209,247	+		GFF5212	0.65	-0.9
5,209,253	-		GFF5212	0.65	+1.3
5,209,253	-		GFF5212	0.65	+0.8
5,209,255	-		GFF5212	0.65	+0.5
5,209,262	+		GFF5212	0.66	+0.6
5,209,264	+		GFF5212	0.66	-0.7
5,209,275	+		GFF5212	0.67	+0.6
5,209,281	-		GFF5212	0.67	+0.2
5,209,281	-		GFF5212	0.67	-0.2
5,209,283	-		GFF5212	0.68	-0.2
5,209,283	-		GFF5212	0.68	-0.3
5,209,283	-		GFF5212	0.68	-2.2
5,209,283	-		GFF5212	0.68	-0.5
5,209,294	-		GFF5212	0.69	-0.9
5,209,294	-		GFF5212	0.69	-0.1
5,209,341	-		GFF5212	0.72	-1.6
5,209,377	-		GFF5212	0.75	+1.4
5,209,421	+		GFF5212	0.79	+1.3
5,209,429	+		GFF5212	0.80	-0.3
5,209,443	+		GFF5212	0.81	+1.1
5,209,447	-		GFF5212	0.81	+0.0
5,209,474	+		GFF5212	0.84	-1.2
5,209,482	-		GFF5212	0.84	-1.1
5,209,517	+		GFF5212	0.87	+0.6
5,209,517	+		GFF5212	0.87	-0.8
5,209,532	-		GFF5212	0.88	-0.4
5,209,534	+		GFF5212	0.89	-0.4
5,209,542	+		GFF5212	0.89	+0.3
5,209,542	+		GFF5212	0.89	-1.5
5,209,550	-				-0.1
5,209,550	-				+0.1
5,209,550	-				+0.1
5,209,570	+				-0.4
5,209,570	+				-1.6
5,209,570	+				-0.7
5,209,572	+				-0.9
5,209,572	+				-1.1
5,209,578	-				+0.5
5,209,578	-				+1.1
5,209,580	-				-1.3
5,209,580	-				-1.7
5,209,588	-				+0.3
5,209,592	+				-0.8
5,209,592	+				-1.8
5,209,600	-				+1.1
5,209,624	-				+0.6
5,209,671	-				-0.5
5,209,701	-				-0.3
5,209,712	-				-1.4
5,209,714	-				-1.5
5,209,722	+				+0.2
5,209,747	-		GFF5213	0.11	-1.2
5,209,753	+		GFF5213	0.11	-1.2
5,209,753	-		GFF5213	0.11	-1.6
5,209,755	+		GFF5213	0.12	-1.4
5,209,761	-		GFF5213	0.12	-0.4
5,209,803	+		GFF5213	0.18	+0.8
5,209,840	-		GFF5213	0.23	-1.2
5,209,842	-		GFF5213	0.23	-1.5
5,209,843	-		GFF5213	0.23	+0.1
5,209,850	-		GFF5213	0.24	-0.1
5,209,894	+		GFF5213	0.30	+0.4
5,209,904	+		GFF5213	0.31	+1.5
5,209,904	+		GFF5213	0.31	+1.5
5,209,912	-		GFF5213	0.32	+0.9
5,209,912	-		GFF5213	0.32	-0.1
5,209,912	-		GFF5213	0.32	-1.8
5,209,912	-		GFF5213	0.32	-0.7
5,209,932	-		GFF5213	0.34	+1.3
5,209,951	+		GFF5213	0.37	-0.3
5,209,998	+		GFF5213	0.43	-0.9
5,209,998	+		GFF5213	0.43	-1.3
5,210,006	-		GFF5213	0.44	+1.2
5,210,006	-		GFF5213	0.44	-0.0
5,210,015	+		GFF5213	0.45	-0.4
5,210,023	-		GFF5213	0.46	-0.9
5,210,083	+		GFF5213	0.54	+0.5
5,210,086	+		GFF5213	0.54	-0.5
5,210,096	-		GFF5213	0.56	-2.4
5,210,113	+		GFF5213	0.58	-0.7
5,210,143	-		GFF5213	0.62	-0.4
5,210,153	+		GFF5213	0.63	+0.5
5,210,153	+		GFF5213	0.63	-1.1
5,210,161	-		GFF5213	0.64	-1.2
5,210,161	-		GFF5213	0.64	+0.9
5,210,203	+		GFF5213	0.70	+0.8
5,210,231	-		GFF5213	0.73	-1.5
5,210,231	-		GFF5213	0.73	-0.5
5,210,233	+		GFF5213	0.73	+0.3
5,210,241	-		GFF5213	0.74	-1.5
5,210,241	-		GFF5213	0.74	+0.6
5,210,252	-		GFF5213	0.76	+0.2
5,210,259	+		GFF5213	0.77	+0.0
5,210,283	-		GFF5213	0.80	-1.3
5,210,283	-		GFF5213	0.80	-0.7
5,210,306	+		GFF5213	0.83	-0.6
5,210,318	+		GFF5213	0.84	+0.3
5,210,318	+		GFF5213	0.84	-0.8
5,210,318	+		GFF5213	0.84	+0.6
5,210,326	-		GFF5213	0.85	+0.5
5,210,332	-		GFF5213	0.86	-0.9
5,210,343	-		GFF5213	0.88	+0.9
5,210,408	+				+1.3
5,210,432	+				-0.7
5,210,434	-				-0.2
5,210,435	-				-2.1
5,210,438	+				-1.7
5,210,453	+				-1.3
5,210,565	+		GFF5214	0.24	+1.0
5,210,592	+		GFF5214	0.30	+0.3
5,210,667	-		GFF5214	0.48	-0.4
5,210,669	-		GFF5214	0.48	+0.2
5,210,752	-		GFF5214	0.68	+0.7
5,210,757	+		GFF5214	0.69	+0.2
5,210,772	+		GFF5214	0.73	+0.5
5,210,780	-		GFF5214	0.75	-1.6
5,210,875	+				+0.9
5,210,880	+				-0.3
5,210,917	-				+1.0
5,210,938	+				+0.4
5,210,938	+				+0.0
5,210,943	+				+0.2
5,210,943	+				+0.7
5,210,946	-				+0.0
5,210,946	-				-1.6
5,210,946	-				-0.3
5,210,946	-				-1.2
5,210,951	-				-2.0
5,211,016	+				-0.8
5,211,030	-				-0.3
5,211,041	+				+0.9
5,211,056	+				-0.8
5,211,056	+				+1.2
5,211,095	+		GFF5215	0.37	-0.8
5,211,103	-		GFF5215	0.43	-2.1
5,211,141	+		GFF5215	0.75	-0.7
5,211,142	-		GFF5215	0.76	-0.7
5,211,165	+				-0.7
5,211,173	-				+0.0
5,211,183	-				-1.8
5,211,196	+				-2.4
5,211,206	-				-0.3
5,211,208	+				+0.5
5,211,213	+				-1.6
5,211,213	+				+0.2
5,211,216	-				-1.8
5,211,221	-				-0.9
5,211,221	-				-0.5
5,211,221	-				+0.7
5,211,235	+				+0.7
5,211,245	-				-0.7
5,211,261	+				-1.2
5,211,298	-				-1.5
5,211,306	-		GFF5216	0.10	+0.5
5,211,308	+		GFF5216	0.10	-1.5
5,211,313	+		GFF5216	0.11	-0.7
5,211,316	-		GFF5216	0.11	+0.7
5,211,316	-		GFF5216	0.11	-2.0
5,211,316	-		GFF5216	0.11	-0.2
5,211,316	-		GFF5216	0.11	-0.7
5,211,316	-		GFF5216	0.11	+1.2
5,211,355	+		GFF5216	0.14	-0.9
5,211,431	+		GFF5216	0.19	-1.3
5,211,431	+		GFF5216	0.19	-0.6
5,211,437	+		GFF5216	0.20	-0.7