Strain Fitness in Sphingobium sp. HT1-2 around GFF5180

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,174,008	+		GFF5179	0.55	-1.8
5,174,025	-		GFF5179	0.55	-1.4
5,174,098	+		GFF5179	0.59	+0.3
5,174,098	+		GFF5179	0.59	-1.9
5,174,098	-		GFF5179	0.59	-1.3
5,174,098	-		GFF5179	0.59	-0.2
5,174,108	+		GFF5179	0.59	-0.5
5,174,116	-		GFF5179	0.59	+0.3
5,174,119	+		GFF5179	0.60	-0.8
5,174,119	+		GFF5179	0.60	-1.4
5,174,127	-		GFF5179	0.60	-1.7
5,174,129	+		GFF5179	0.60	-1.2
5,174,133	-		GFF5179	0.60	-1.0
5,174,161	-		GFF5179	0.61	+0.0
5,174,164	+		GFF5179	0.62	-1.5
5,174,172	-		GFF5179	0.62	-2.0
5,174,192	-		GFF5179	0.63	-0.4
5,174,213	-		GFF5179	0.64	-0.9
5,174,223	-		GFF5179	0.64	-0.1
5,174,223	-		GFF5179	0.64	-1.4
5,174,229	-		GFF5179	0.65	-0.2
5,174,231	-		GFF5179	0.65	-0.7
5,174,234	+		GFF5179	0.65	-1.6
5,174,234	+		GFF5179	0.65	-0.4
5,174,247	-		GFF5179	0.65	-0.6
5,174,265	-		GFF5179	0.66	-2.1
5,174,265	-		GFF5179	0.66	-1.8
5,174,276	+		GFF5179	0.67	-1.6
5,174,276	+		GFF5179	0.67	-0.6
5,174,276	+		GFF5179	0.67	-1.1
5,174,276	+		GFF5179	0.67	-0.1
5,174,276	+		GFF5179	0.67	-2.1
5,174,295	+		GFF5179	0.68	+0.5
5,174,310	-		GFF5179	0.68	+0.3
5,174,316	-		GFF5179	0.69	-1.9
5,174,332	+		GFF5179	0.69	-1.4
5,174,350	+		GFF5179	0.70	-0.4
5,174,350	+		GFF5179	0.70	-2.0
5,174,350	+		GFF5179	0.70	-1.5
5,174,350	+		GFF5179	0.70	-1.0
5,174,350	-		GFF5179	0.70	-2.7
5,174,358	-		GFF5179	0.71	-2.2
5,174,358	-		GFF5179	0.71	-2.3
5,174,377	+		GFF5179	0.71	-0.7
5,174,383	+		GFF5179	0.72	-1.0
5,174,406	-		GFF5179	0.73	-0.9
5,174,407	-		GFF5179	0.73	-1.4
5,174,454	+		GFF5179	0.75	-0.7
5,174,455	-		GFF5179	0.75	+0.2
5,174,463	+		GFF5179	0.75	-1.5
5,174,464	+		GFF5179	0.75	-1.5
5,174,465	+		GFF5179	0.75	-1.8
5,174,465	+		GFF5179	0.75	-1.3
5,174,471	-		GFF5179	0.76	-0.5
5,174,473	-		GFF5179	0.76	-0.0
5,174,473	-		GFF5179	0.76	-0.7
5,174,508	+		GFF5179	0.77	-2.0
5,174,527	-		GFF5179	0.78	+1.1
5,174,550	-		GFF5179	0.79	-0.4
5,174,586	-		GFF5179	0.81	-2.0
5,174,590	+		GFF5179	0.81	-0.5
5,174,602	+		GFF5179	0.82	-0.7
5,174,602	+		GFF5179	0.82	-2.3
5,174,610	-		GFF5179	0.82	-1.2
5,174,610	-		GFF5179	0.82	-1.2
5,174,615	+		GFF5179	0.82	-1.3
5,174,615	+		GFF5179	0.82	-0.7
5,174,615	+		GFF5179	0.82	+1.1
5,174,615	+		GFF5179	0.82	-0.9
5,174,615	+		GFF5179	0.82	-1.7
5,174,615	+		GFF5179	0.82	-0.1
5,174,615	+		GFF5179	0.82	-0.3
5,174,615	+		GFF5179	0.82	+0.9
5,174,618	-		GFF5179	0.82	+0.0
5,174,623	-		GFF5179	0.83	+0.2
5,174,623	-		GFF5179	0.83	-1.4
5,174,623	-		GFF5179	0.83	-1.1
5,174,623	-		GFF5179	0.83	+1.1
5,174,623	-		GFF5179	0.83	-0.7
5,174,624	+		GFF5179	0.83	+0.1
5,174,669	+		GFF5179	0.85	+0.3
5,174,674	+		GFF5179	0.85	-1.0
5,174,675	-		GFF5179	0.85	-3.0
5,174,675	-		GFF5179	0.85	-2.0
5,174,677	-		GFF5179	0.85	-0.7
5,174,679	+		GFF5179	0.85	-0.9
5,174,685	+		GFF5179	0.85	+1.1
5,174,686	-		GFF5179	0.86	-0.9
5,174,687	-		GFF5179	0.86	-0.7
5,174,697	+		GFF5179	0.86	-1.9
5,174,697	-		GFF5179	0.86	-1.1
5,174,709	+		GFF5179	0.87	-1.0
5,174,709	+		GFF5179	0.87	-1.8
5,174,714	+		GFF5179	0.87	-1.2
5,174,717	-		GFF5179	0.87	-1.6
5,174,717	-		GFF5179	0.87	+1.6
5,174,727	+		GFF5179	0.87	-0.8
5,174,727	+		GFF5179	0.87	+0.7
5,174,735	-		GFF5179	0.88	-1.6
5,174,746	+		GFF5179	0.88	-0.3
5,174,756	+		GFF5179	0.89	+1.2
5,174,756	+		GFF5179	0.89	-1.3
5,174,756	+		GFF5179	0.89	+0.4
5,174,756	+		GFF5179	0.89	+0.8
5,174,756	+		GFF5179	0.89	-0.1
5,174,759	-		GFF5179	0.89	-1.0
5,174,759	-		GFF5179	0.89	-0.5
5,174,761	+		GFF5179	0.89	-0.5
5,174,762	-		GFF5179	0.89	-0.1
5,174,764	-		GFF5179	0.89	-0.3
5,174,764	-		GFF5179	0.89	+0.5
5,174,764	-		GFF5179	0.89	+0.1
5,174,766	+		GFF5179	0.89	-0.6
5,174,769	-		GFF5179	0.89	-1.2
5,174,769	-		GFF5179	0.89	-0.1
5,174,769	-		GFF5179	0.89	+0.1
5,174,779	-		GFF5179	0.90	-0.7
5,174,779	-		GFF5179	0.90	+0.3
5,174,786	+				-0.4
5,174,800	-				+0.5
5,174,830	+				+0.5
5,174,838	-				-0.6
5,174,838	-				-1.3
5,174,838	-				-0.4
5,174,841	-				-1.7
5,174,848	-				-0.4
5,174,877	-				-1.9
5,174,877	-				-0.1
5,174,877	-				-2.4
5,174,877	-				-0.6
5,174,884	-				-1.4
5,174,896	-				-1.0
5,174,899	+				-1.9
5,174,903	-				-0.5
5,174,915	+				-1.7
5,174,915	+				-0.5
5,174,925	+				-1.2
5,174,925	+				-0.4
5,174,932	-				-1.5
5,174,933	-				-0.5
5,174,934	-				-1.3
5,174,968	+				+0.1
5,174,976	-				-0.4
5,174,980	-				+0.2
5,174,986	-				-1.0
5,174,996	+				+0.9
5,174,996	+				+0.5
5,174,996	+				-1.3
5,175,001	+				+0.0
5,175,004	-				-0.2
5,175,004	-				+0.4
5,175,004	-				+0.3
5,175,044	-				-0.7
5,175,047	-				-1.0
5,175,074	+		GFF5180	0.12	+0.6
5,175,084	+		GFF5180	0.13	-0.8
5,175,084	+		GFF5180	0.13	-1.8
5,175,092	-		GFF5180	0.15	-0.9
5,175,115	-		GFF5180	0.19	-0.3
5,175,117	+		GFF5180	0.19	+0.3
5,175,122	+		GFF5180	0.20	-1.4
5,175,125	-		GFF5180	0.20	-1.3
5,175,125	-		GFF5180	0.20	+0.1
5,175,128	+		GFF5180	0.21	+0.0
5,175,129	+		GFF5180	0.21	-0.1
5,175,133	+		GFF5180	0.22	-0.7
5,175,141	-		GFF5180	0.23	-2.4
5,175,143	+		GFF5180	0.23	-0.9
5,175,143	+		GFF5180	0.23	-1.4
5,175,157	-		GFF5180	0.26	-1.1
5,175,164	+		GFF5180	0.27	-0.9
5,175,164	+		GFF5180	0.27	+0.6
5,175,177	-		GFF5180	0.29	+0.2
5,175,229	+		GFF5180	0.38	-1.1
5,175,239	-		GFF5180	0.39	-0.4
5,175,266	+		GFF5180	0.44	-1.6
5,175,274	-		GFF5180	0.45	-0.7
5,175,280	+		GFF5180	0.46	-1.4
5,175,294	+		GFF5180	0.49	-0.8
5,175,297	-		GFF5180	0.49	-0.4
5,175,299	+		GFF5180	0.49	+0.7
5,175,299	+		GFF5180	0.49	-1.4
5,175,299	+		GFF5180	0.49	-0.9
5,175,299	+		GFF5180	0.49	-1.6
5,175,299	+		GFF5180	0.49	-1.7
5,175,302	-		GFF5180	0.50	-0.4
5,175,302	-		GFF5180	0.50	+0.4
5,175,302	-		GFF5180	0.50	-0.2
5,175,304	+		GFF5180	0.50	+0.2
5,175,307	-		GFF5180	0.51	+0.2
5,175,307	-		GFF5180	0.51	+0.1
5,175,307	-		GFF5180	0.51	-1.6
5,175,307	-		GFF5180	0.51	-1.4
5,175,308	-		GFF5180	0.51	-1.1
5,175,346	+		GFF5180	0.57	+0.3
5,175,348	+		GFF5180	0.58	+0.6
5,175,348	+		GFF5180	0.58	-0.9
5,175,348	+		GFF5180	0.58	-0.3
5,175,348	+		GFF5180	0.58	-0.5
5,175,354	-		GFF5180	0.59	-0.9
5,175,354	-		GFF5180	0.59	-1.6
5,175,354	-		GFF5180	0.59	-2.1
5,175,356	-		GFF5180	0.59	+0.4
5,175,356	-		GFF5180	0.59	+0.1
5,175,356	-		GFF5180	0.59	-1.0
5,175,356	-		GFF5180	0.59	-1.4
5,175,365	-		GFF5180	0.61	-0.9
5,175,397	-		GFF5180	0.66	-0.7
5,175,431	-		GFF5180	0.72	-0.1
5,175,469	-		GFF5180	0.78	+0.1
5,175,482	+		GFF5180	0.80	-0.9
5,175,497	+		GFF5180	0.83	-0.2
5,175,512	+		GFF5180	0.85	-0.9
5,175,520	-		GFF5180	0.87	-1.7
5,175,539	-				+0.2
5,175,541	+				-1.4
5,175,549	+				-1.8
5,175,557	-				-0.8
5,175,558	-				-1.4
5,175,563	+				+1.8
5,175,569	-				+0.1
5,175,571	-				-1.8
5,175,571	-				-1.9
5,175,586	+				+0.1
5,175,588	+				-1.6
5,175,588	+				-1.2
5,175,588	+				-0.1
5,175,593	+				-1.4
5,175,598	+				-1.7
5,175,598	+				-0.1
5,175,598	+				-1.0
5,175,601	-				-0.9
5,175,603	-				-0.7
5,175,624	-				-2.1
5,175,644	+				-1.0
5,175,646	-				-1.2
5,175,652	+				+0.1
5,175,652	-				-1.9
5,175,652	-				-0.2
5,175,655	-				-1.4
5,175,656	+				-1.0
5,175,656	+				+0.8
5,175,664	-				-1.1
5,175,666	+				+0.5
5,175,666	+				-0.8
5,175,674	+				-2.2
5,175,674	+				-0.7
5,175,682	-				+0.6
5,175,708	+				-0.9
5,175,716	-				-2.3
5,175,724	+				-0.0
5,175,725	+				+0.2
5,175,734	-		GFF5181	0.12	-0.0
5,175,744	-		GFF5181	0.17	+0.3
5,175,745	+		GFF5181	0.18	-1.1
5,175,752	+		GFF5181	0.21	+1.0
5,175,752	+		GFF5181	0.21	+0.3
5,175,753	+		GFF5181	0.22	-1.3
5,175,780	-		GFF5181	0.36	-1.7
5,175,789	+		GFF5181	0.41	-1.4
5,175,789	+		GFF5181	0.41	+0.0
5,175,818	-		GFF5181	0.56	+0.1
5,175,827	+		GFF5181	0.60	+0.2
5,175,849	-		GFF5181	0.72	-1.0
5,175,859	+		GFF5181	0.77	-1.7
5,175,859	-		GFF5181	0.77	+0.3
5,175,861	+		GFF5181	0.78	+1.2
5,175,869	-		GFF5181	0.82	-1.3
5,175,884	-				+1.4
5,175,884	-				-0.2
5,175,904	+				-0.7
5,175,909	+				-0.7
5,175,912	-				-0.7
5,175,912	-				-1.2
5,175,934	+				+0.3
5,175,942	-				-1.0
5,175,951	+				+0.1
5,175,954	+				+0.6
5,175,959	+				-0.9
5,175,959	+				+0.1
5,175,959	+				-0.0
5,175,959	+				-0.4
5,175,959	+				-0.5
5,175,959	+				-1.2
5,175,959	+				+1.5
5,175,959	+				-2.4
5,175,959	+				+0.6
5,175,959	+				-1.2
5,175,959	+				+0.3
5,175,967	-				-1.0
5,175,967	-				-1.0
5,175,967	-				+0.0
5,175,967	-				-0.7
5,175,967	-				-0.2
5,175,967	-				+0.4
5,175,967	-				-1.3
5,175,996	+		GFF5182	0.17	-0.4
5,176,009	+		GFF5182	0.20	-0.2
5,176,088	+		GFF5182	0.39	+0.9
5,176,089	+		GFF5182	0.40	-2.0
5,176,089	+		GFF5182	0.40	-0.6
5,176,097	-		GFF5182	0.42	-1.5
5,176,099	+		GFF5182	0.42	+0.4
5,176,108	+		GFF5182	0.44	-1.4
5,176,118	+		GFF5182	0.47	-0.3
5,176,124	+		GFF5182	0.48	-1.2
5,176,124	+		GFF5182	0.48	-1.3
5,176,124	+		GFF5182	0.48	-1.7
5,176,124	+		GFF5182	0.48	-0.1
5,176,124	+		GFF5182	0.48	-0.1
5,176,124	+		GFF5182	0.48	-1.5
5,176,124	+		GFF5182	0.48	-0.9
5,176,124	+		GFF5182	0.48	-0.9
5,176,124	+		GFF5182	0.48	+0.6
5,176,124	+		GFF5182	0.48	-0.9
5,176,124	+		GFF5182	0.48	-0.7
5,176,124	+		GFF5182	0.48	-1.3
5,176,124	+		GFF5182	0.48	-0.1
5,176,124	+		GFF5182	0.48	-1.7
5,176,124	+		GFF5182	0.48	-1.9
5,176,124	+		GFF5182	0.48	+0.1
5,176,129	+		GFF5182	0.50	-1.4
5,176,132	-		GFF5182	0.50	-2.0
5,176,132	-		GFF5182	0.50	-1.5
5,176,132	-		GFF5182	0.50	-1.9
5,176,132	-		GFF5182	0.50	-0.1
5,176,132	-		GFF5182	0.50	+0.6
5,176,132	-		GFF5182	0.50	+0.7
5,176,132	-		GFF5182	0.50	+0.0
5,176,132	-		GFF5182	0.50	-1.8
5,176,132	-		GFF5182	0.50	+0.2
5,176,132	-		GFF5182	0.50	-2.0
5,176,132	-		GFF5182	0.50	-0.7
5,176,132	-		GFF5182	0.50	-0.1
5,176,132	-		GFF5182	0.50	-1.6
5,176,132	-		GFF5182	0.50	-1.4
5,176,132	-		GFF5182	0.50	-1.1
5,176,132	-		GFF5182	0.50	-0.9
5,176,132	-		GFF5182	0.50	-0.6
5,176,132	-		GFF5182	0.50	-0.7
5,176,132	-		GFF5182	0.50	-1.4
5,176,132	-		GFF5182	0.50	-1.0
5,176,132	-		GFF5182	0.50	-1.1
5,176,132	-		GFF5182	0.50	-1.1
5,176,132	-		GFF5182	0.50	-1.1
5,176,132	-		GFF5182	0.50	-1.0
5,176,132	-		GFF5182	0.50	-1.5
5,176,137	-		GFF5182	0.51	-0.3
5,176,137	-		GFF5182	0.51	-1.2
5,176,137	-		GFF5182	0.51	-1.9
5,176,139	+		GFF5182	0.52	-0.4
5,176,139	+		GFF5182	0.52	-0.8
5,176,139	+		GFF5182	0.52	-1.6
5,176,140	-		GFF5182	0.52	-1.4
5,176,144	+		GFF5182	0.53	-1.7
5,176,147	-		GFF5182	0.54	-0.2
5,176,147	-		GFF5182	0.54	-0.5
5,176,147	-		GFF5182	0.54	-0.8
5,176,147	-		GFF5182	0.54	-0.0
5,176,147	-		GFF5182	0.54	+1.1
5,176,152	-		GFF5182	0.55	-1.0
5,176,152	-		GFF5182	0.55	-2.3
5,176,152	-		GFF5182	0.55	-2.6
5,176,154	+		GFF5182	0.56	-1.4
5,176,154	+		GFF5182	0.56	-0.0
5,176,157	-		GFF5182	0.56	-0.9
5,176,157	-		GFF5182	0.56	-0.2
5,176,159	+		GFF5182	0.57	-0.2
5,176,162	-		GFF5182	0.58	-0.6
5,176,162	-		GFF5182	0.58	-0.9
5,176,162	-		GFF5182	0.58	-0.7
5,176,167	-		GFF5182	0.59	-1.1
5,176,167	-		GFF5182	0.59	-0.3
5,176,167	-		GFF5182	0.59	+0.5
5,176,168	+		GFF5182	0.59	-0.4
5,176,168	+		GFF5182	0.59	-2.0
5,176,176	-		GFF5182	0.61	-1.2
5,176,176	-		GFF5182	0.61	-0.7
5,176,176	-		GFF5182	0.61	-2.4
5,176,178	+		GFF5182	0.62	-0.5
5,176,186	+		GFF5182	0.63	-1.3
5,176,187	-		GFF5182	0.64	+0.1
5,176,194	-		GFF5182	0.65	-1.2
5,176,232	+		GFF5182	0.75	-0.4
5,176,247	+		GFF5182	0.78	-1.6
5,176,274	+		GFF5182	0.85	-0.9
5,176,274	+		GFF5182	0.85	+0.3
5,176,282	-		GFF5182	0.87	-0.9
5,176,282	-		GFF5182	0.87	-2.0
5,176,282	-		GFF5182	0.87	-0.7
5,176,309	-				+0.0
5,176,352	-				-0.6