Strain Fitness in Sphingobium sp. HT1-2 around GFF5082

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,074,244	-				+0.2
5,074,272	+				-1.2
5,074,273	+				+0.0
5,074,280	-				-2.5
5,074,280	-				-2.2
5,074,280	-				+0.1
5,074,290	-				-0.6
5,074,292	+				-2.4
5,074,292	+				-1.7
5,074,300	-				-1.2
5,074,300	-				-0.9
5,074,301	+				+0.3
5,074,301	+				-1.0
5,074,301	+				-0.7
5,074,304	-				+0.0
5,074,309	-				+0.2
5,074,309	-				-1.5
5,074,309	-				-1.6
5,074,309	-				-0.6
5,074,314	-				-2.6
5,074,316	+				-2.1
5,074,316	+				-2.8
5,074,324	-		GFF5080	0.10	-1.3
5,074,324	-		GFF5080	0.10	-1.0
5,074,355	+		GFF5080	0.15	+0.4
5,074,374	+		GFF5080	0.19	-0.3
5,074,374	+		GFF5080	0.19	-0.4
5,074,374	+		GFF5080	0.19	+0.2
5,074,382	-		GFF5080	0.20	-1.2
5,074,418	+		GFF5080	0.26	-1.2
5,074,418	+		GFF5080	0.26	-1.7
5,074,418	+		GFF5080	0.26	-1.1
5,074,418	+		GFF5080	0.26	-0.9
5,074,418	+		GFF5080	0.26	-0.2
5,074,418	+		GFF5080	0.26	-1.3
5,074,418	+		GFF5080	0.26	-1.5
5,074,420	-		GFF5080	0.26	-1.3
5,074,420	-		GFF5080	0.26	-0.5
5,074,423	+		GFF5080	0.27	-1.8
5,074,423	+		GFF5080	0.27	+0.1
5,074,423	+		GFF5080	0.27	+0.1
5,074,426	-		GFF5080	0.27	-1.9
5,074,426	-		GFF5080	0.27	-2.2
5,074,426	-		GFF5080	0.27	-0.5
5,074,426	-		GFF5080	0.27	-0.7
5,074,426	-		GFF5080	0.27	-1.9
5,074,431	-		GFF5080	0.28	+1.0
5,074,482	-		GFF5080	0.37	-2.5
5,074,486	-		GFF5080	0.37	-0.8
5,074,486	-		GFF5080	0.37	-0.6
5,074,486	-		GFF5080	0.37	+0.0
5,074,493	+		GFF5080	0.39	-0.8
5,074,493	+		GFF5080	0.39	-1.0
5,074,493	+		GFF5080	0.39	-0.7
5,074,493	+		GFF5080	0.39	-2.9
5,074,493	+		GFF5080	0.39	-0.3
5,074,493	+		GFF5080	0.39	-0.3
5,074,493	+		GFF5080	0.39	+0.0
5,074,501	-		GFF5080	0.40	-0.2
5,074,501	-		GFF5080	0.40	-0.8
5,074,501	-		GFF5080	0.40	-0.8
5,074,501	-		GFF5080	0.40	-2.2
5,074,501	-		GFF5080	0.40	+0.0
5,074,516	-		GFF5080	0.42	+0.9
5,074,516	-		GFF5080	0.42	+0.5
5,074,518	+		GFF5080	0.43	+0.6
5,074,542	+		GFF5080	0.47	-1.8
5,074,552	-		GFF5080	0.48	-1.3
5,074,584	+		GFF5080	0.54	+0.6
5,074,606	+		GFF5080	0.58	-1.8
5,074,606	+		GFF5080	0.58	-1.9
5,074,646	-		GFF5080	0.64	-1.4
5,074,647	+		GFF5080	0.64	-1.8
5,075,009	+				-2.0
5,075,009	-				-2.3
5,075,017	-				-0.2
5,075,017	-				-1.4
5,075,017	-				-1.8
5,075,019	-				-1.8
5,075,021	+				-0.8
5,075,021	+				-0.8
5,075,023	+				-0.4
5,075,023	+				+1.4
5,075,029	+				+0.5
5,075,029	-				-1.1
5,075,029	-				+0.1
5,075,031	-				-2.0
5,075,039	+				-1.0
5,075,040	+				+0.1
5,075,042	+				-1.1
5,075,047	+				+0.8
5,075,052	+				-1.8
5,075,055	-				-0.5
5,075,063	-				-0.4
5,075,087	-				-1.4
5,075,095	+				-1.6
5,075,103	-				+0.1
5,075,103	-				+0.2
5,075,109	+				+0.8
5,075,118	-				-0.8
5,075,146	+				-0.0
5,075,147	+				-2.8
5,075,180	-				+0.2
5,075,190	+				-0.9
5,075,193	-				+0.3
5,075,198	-				+0.0
5,075,240	+				-0.5
5,075,254	+				-0.5
5,075,254	+				-0.9
5,075,254	+				-1.3
5,075,254	+				+0.8
5,075,254	+				-1.1
5,075,254	+				-0.5
5,075,257	-				-0.8
5,075,262	-				-2.1
5,075,262	-				-0.3
5,075,262	-				+0.2
5,075,262	-				-2.0
5,075,262	-				+0.6
5,075,269	-				+0.0
5,075,270	-				-1.5
5,075,275	-				+0.9
5,075,286	-				-0.7
5,075,307	+		GFF5082	0.12	-0.8
5,075,307	+		GFF5082	0.12	-1.0
5,075,315	-		GFF5082	0.13	-1.2
5,075,353	+		GFF5082	0.18	-1.9
5,075,353	-		GFF5082	0.18	+0.5
5,075,356	+		GFF5082	0.18	-0.7
5,075,363	-		GFF5082	0.19	-0.5
5,075,363	-		GFF5082	0.19	-0.1
5,075,393	+		GFF5082	0.23	-2.5
5,075,409	-		GFF5082	0.25	-0.8
5,075,409	-		GFF5082	0.25	-2.6
5,075,413	+		GFF5082	0.26	-2.4
5,075,419	+		GFF5082	0.27	-0.9
5,075,419	+		GFF5082	0.27	-0.4
5,075,419	+		GFF5082	0.27	-1.4
5,075,419	+		GFF5082	0.27	-1.1
5,075,419	+		GFF5082	0.27	-1.5
5,075,424	+		GFF5082	0.27	-0.7
5,075,427	-		GFF5082	0.28	+0.3
5,075,427	-		GFF5082	0.28	-1.1
5,075,427	-		GFF5082	0.28	-1.2
5,075,432	-		GFF5082	0.28	-0.2
5,075,432	-		GFF5082	0.28	+0.2
5,075,432	-		GFF5082	0.28	-0.6
5,075,432	-		GFF5082	0.28	-0.6
5,075,456	-		GFF5082	0.31	+0.3
5,075,475	+		GFF5082	0.34	-2.1
5,075,484	+		GFF5082	0.35	-0.2
5,075,484	+		GFF5082	0.35	+0.6
5,075,484	+		GFF5082	0.35	-0.8
5,075,492	-		GFF5082	0.36	-0.8
5,075,492	-		GFF5082	0.36	-0.9
5,075,492	-		GFF5082	0.36	-0.5
5,075,494	+		GFF5082	0.36	-1.4
5,075,494	+		GFF5082	0.36	-1.0
5,075,494	+		GFF5082	0.36	-0.9
5,075,499	+		GFF5082	0.37	-1.0
5,075,502	-		GFF5082	0.37	-2.6
5,075,502	-		GFF5082	0.37	-0.5
5,075,507	-		GFF5082	0.38	-1.0
5,075,509	+		GFF5082	0.38	-0.9
5,075,514	+		GFF5082	0.39	-1.2
5,075,514	+		GFF5082	0.39	-2.2
5,075,517	-		GFF5082	0.39	-0.0
5,075,531	-		GFF5082	0.41	-2.0
5,075,551	+		GFF5082	0.44	-2.1
5,075,551	+		GFF5082	0.44	-1.3
5,075,551	+		GFF5082	0.44	-1.5
5,075,551	+		GFF5082	0.44	-1.7
5,075,551	+		GFF5082	0.44	-2.0
5,075,551	+		GFF5082	0.44	-0.5
5,075,557	+		GFF5082	0.45	+0.2
5,075,559	-		GFF5082	0.45	-0.1
5,075,559	-		GFF5082	0.45	-1.1
5,075,559	-		GFF5082	0.45	-0.8
5,075,559	-		GFF5082	0.45	-0.9
5,075,559	-		GFF5082	0.45	-1.2
5,075,573	+		GFF5082	0.47	-2.2
5,075,581	-		GFF5082	0.48	-1.2
5,075,581	-		GFF5082	0.48	-1.2
5,075,589	+		GFF5082	0.49	-0.5
5,075,595	+		GFF5082	0.50	+0.8
5,075,601	+		GFF5082	0.50	-0.7
5,075,601	+		GFF5082	0.50	-0.4
5,075,601	+		GFF5082	0.50	-1.5
5,075,603	-		GFF5082	0.51	+0.4
5,075,608	+		GFF5082	0.51	-1.4
5,075,609	-		GFF5082	0.51	-0.8
5,075,609	-		GFF5082	0.51	-1.5
5,075,609	-		GFF5082	0.51	-1.1
5,075,609	-		GFF5082	0.51	-1.0
5,075,609	-		GFF5082	0.51	-1.1
5,075,609	-		GFF5082	0.51	-1.8
5,075,618	-		GFF5082	0.53	-1.2
5,075,620	+		GFF5082	0.53	+0.2
5,075,628	+		GFF5082	0.54	-0.4
5,075,628	-		GFF5082	0.54	+0.2
5,075,640	+		GFF5082	0.55	+0.9
5,075,647	+		GFF5082	0.56	-1.3
5,075,650	+		GFF5082	0.57	-1.5
5,075,650	+		GFF5082	0.57	-0.0
5,075,650	+		GFF5082	0.57	+0.4
5,075,654	+		GFF5082	0.57	-1.4
5,075,658	-		GFF5082	0.58	+1.3
5,075,660	+		GFF5082	0.58	+0.5
5,075,660	+		GFF5082	0.58	-0.8
5,075,663	-		GFF5082	0.58	-1.5
5,075,663	-		GFF5082	0.58	-1.6
5,075,665	+		GFF5082	0.59	-0.0
5,075,676	+		GFF5082	0.60	-0.9
5,075,700	+		GFF5082	0.63	-1.4
5,075,713	+		GFF5082	0.65	-0.8
5,075,735	-		GFF5082	0.68	-1.1
5,075,735	-		GFF5082	0.68	+0.8
5,075,737	+		GFF5082	0.68	-1.0
5,075,737	+		GFF5082	0.68	-0.9
5,075,737	+		GFF5082	0.68	-2.4
5,075,745	-		GFF5082	0.69	-1.3
5,075,745	-		GFF5082	0.69	-1.8
5,075,745	-		GFF5082	0.69	+0.8
5,075,759	-		GFF5082	0.71	-0.1
5,075,768	+		GFF5082	0.72	-0.4
5,075,768	+		GFF5082	0.72	-0.9
5,075,781	-		GFF5082	0.74	-0.6
5,075,795	-		GFF5082	0.76	-1.5
5,075,795	-		GFF5082	0.76	+0.2
5,075,802	+		GFF5082	0.77	-0.3
5,075,802	+		GFF5082	0.77	+0.1
5,075,806	+		GFF5082	0.77	+1.5
5,075,810	-		GFF5082	0.78	-0.7
5,075,814	-		GFF5082	0.78	-0.3
5,075,828	+		GFF5082	0.80	-2.0
5,075,831	-		GFF5082	0.80	+0.4
5,075,831	-		GFF5082	0.80	-1.0
5,075,850	+		GFF5082	0.83	+0.3
5,075,858	-		GFF5082	0.84	+1.0
5,075,860	-		GFF5082	0.84	-0.9
5,075,862	+		GFF5082	0.84	-0.2
5,075,862	+		GFF5082	0.84	-1.3
5,075,868	-		GFF5082	0.85	-0.5
5,075,893	-		GFF5082	0.88	-0.5
5,075,898	+		GFF5082	0.89	-0.8
5,075,900	+		GFF5082	0.89	-2.3
5,075,903	+		GFF5082	0.90	-0.5
5,075,906	-				+0.1
5,075,920	+				-0.5
5,075,921	+				-2.4
5,075,928	-				+0.4
5,075,929	-				-1.7
5,075,961	+				+0.3
5,075,974	+				-0.2
5,075,974	+				-1.5
5,075,974	+				-0.6
5,075,990	-				+0.8
5,075,991	-				-2.0
5,075,991	-				-1.2
5,075,996	+				-1.8
5,076,003	+				-2.0
5,076,003	+				-1.0
5,076,003	+				+0.8
5,076,003	+				-0.8
5,076,011	-				-0.8
5,076,011	-				+0.4
5,076,011	-				-1.4
5,076,039	+				-1.5
5,076,039	+				-1.2
5,076,039	+				+0.6
5,076,047	-				-0.5
5,076,047	-				-1.3
5,076,047	-				-1.7
5,076,047	-				+0.2
5,076,047	-				-0.4
5,076,047	-				+0.4
5,076,064	+				+0.2
5,076,088	+		GFF5083	0.11	-1.2
5,076,098	+		GFF5083	0.13	-1.4
5,076,106	-		GFF5083	0.14	-1.8
5,076,132	-		GFF5083	0.19	-1.6
5,076,140	-		GFF5083	0.21	-1.0
5,076,152	+		GFF5083	0.23	-0.2
5,076,152	+		GFF5083	0.23	-1.2
5,076,152	+		GFF5083	0.23	-1.5
5,076,157	+		GFF5083	0.24	-0.3
5,076,160	-		GFF5083	0.24	-0.8
5,076,160	-		GFF5083	0.24	-1.1
5,076,160	-		GFF5083	0.24	-0.2
5,076,160	-		GFF5083	0.24	-2.1
5,076,160	-		GFF5083	0.24	-0.6
5,076,165	+		GFF5083	0.25	-1.0
5,076,165	+		GFF5083	0.25	-0.8
5,076,173	-		GFF5083	0.27	+0.6
5,076,173	-		GFF5083	0.27	-1.5
5,076,173	-		GFF5083	0.27	-0.9
5,076,185	+		GFF5083	0.29	-1.0
5,076,185	+		GFF5083	0.29	-1.8
5,076,185	+		GFF5083	0.29	-1.0
5,076,185	+		GFF5083	0.29	-0.8
5,076,185	+		GFF5083	0.29	-1.3
5,076,193	-		GFF5083	0.30	+0.0
5,076,200	+		GFF5083	0.32	-1.6
5,076,200	+		GFF5083	0.32	-1.3
5,076,200	+		GFF5083	0.32	-1.0
5,076,200	+		GFF5083	0.32	-0.4
5,076,200	+		GFF5083	0.32	-0.4
5,076,200	+		GFF5083	0.32	-0.7
5,076,203	-		GFF5083	0.32	+0.6
5,076,203	-		GFF5083	0.32	-1.1
5,076,208	-		GFF5083	0.33	-0.5
5,076,208	-		GFF5083	0.33	-1.1
5,076,208	-		GFF5083	0.33	-1.1
5,076,208	-		GFF5083	0.33	-0.4
5,076,208	-		GFF5083	0.33	-2.3
5,076,217	+		GFF5083	0.35	-0.0
5,076,217	+		GFF5083	0.35	-1.1
5,076,217	+		GFF5083	0.35	-2.6
5,076,236	+		GFF5083	0.38	-1.2
5,076,236	+		GFF5083	0.38	-1.0
5,076,238	-		GFF5083	0.38	+0.2
5,076,241	+		GFF5083	0.39	-1.1
5,076,255	+		GFF5083	0.41	-1.4
5,076,255	+		GFF5083	0.41	-0.3
5,076,255	+		GFF5083	0.41	-0.4
5,076,266	+		GFF5083	0.43	-2.4
5,076,268	-		GFF5083	0.44	-0.1
5,076,274	+		GFF5083	0.45	-0.8
5,076,274	+		GFF5083	0.45	-0.9
5,076,274	+		GFF5083	0.45	-0.7
5,076,282	-		GFF5083	0.46	-0.9
5,076,299	+		GFF5083	0.49	-0.8
5,076,299	-		GFF5083	0.49	-1.5
5,076,309	-		GFF5083	0.51	-0.6
5,076,318	+		GFF5083	0.53	-2.3
5,076,318	+		GFF5083	0.53	-0.0
5,076,321	-		GFF5083	0.53	-2.4
5,076,324	+		GFF5083	0.54	+0.6
5,076,326	-		GFF5083	0.54	-2.1
5,076,326	-		GFF5083	0.54	-2.5
5,076,326	-		GFF5083	0.54	-0.1
5,076,331	-		GFF5083	0.55	+0.3
5,076,336	+		GFF5083	0.56	-2.0
5,076,384	+		GFF5083	0.65	-0.0
5,076,409	-		GFF5083	0.69	-0.9
5,076,410	-		GFF5083	0.70	-0.8
5,076,412	+		GFF5083	0.70	-0.8
5,076,412	+		GFF5083	0.70	+0.4
5,076,415	-		GFF5083	0.70	+0.1
5,076,420	-		GFF5083	0.71	+1.0
5,076,421	+		GFF5083	0.72	-0.3
5,076,432	+		GFF5083	0.74	+0.2
5,076,435	-		GFF5083	0.74	-2.0
5,076,435	-		GFF5083	0.74	-1.2
5,076,435	-		GFF5083	0.74	-0.8
5,076,440	-		GFF5083	0.75	-0.0
5,076,446	-		GFF5083	0.76	-2.2
5,076,451	+		GFF5083	0.77	-0.8
5,076,451	+		GFF5083	0.77	-0.0
5,076,453	+		GFF5083	0.77	-0.7
5,076,453	+		GFF5083	0.77	-0.4
5,076,458	+		GFF5083	0.78	-1.0
5,076,458	+		GFF5083	0.78	+0.3
5,076,458	+		GFF5083	0.78	+0.3
5,076,458	+		GFF5083	0.78	-0.9
5,076,458	+		GFF5083	0.78	-1.4
5,076,459	-		GFF5083	0.78	-2.0
5,076,459	-		GFF5083	0.78	-0.3
5,076,461	-		GFF5083	0.79	-1.2
5,076,461	-		GFF5083	0.79	-2.2
5,076,466	-		GFF5083	0.80	-2.0
5,076,466	-		GFF5083	0.80	-1.3
5,076,466	-		GFF5083	0.80	-1.4
5,076,466	-		GFF5083	0.80	+0.1
5,076,479	-		GFF5083	0.82	-0.5
5,076,480	+		GFF5083	0.82	+0.8
5,076,482	+		GFF5083	0.83	-1.1
5,076,482	+		GFF5083	0.83	-0.8
5,076,490	-		GFF5083	0.84	-1.1
5,076,490	-		GFF5083	0.84	+0.3
5,076,506	-		GFF5083	0.87	+0.8
5,076,543	+				-1.2
5,076,544	+				-1.4
5,076,551	-				-0.9
5,076,558	+				-0.8
5,076,559	+				-2.4
5,076,587	-				-1.1
5,076,598	+				-0.6
5,076,600	-				+0.4
5,076,670	+				-0.3
5,076,670	+				-0.8
5,076,672	+				-1.1
5,076,672	+				+0.3
5,076,672	+				-1.2
5,076,672	+				+0.1
5,076,672	+				+0.6
5,076,672	+				-1.3
5,076,672	-				-2.2
5,076,678	-				-1.0
5,076,678	-				-2.4
5,076,684	+				-2.0
5,076,689	+				-1.8
5,076,706	-		GFF5084	0.11	-1.0
5,076,706	-		GFF5084	0.11	-2.5
5,076,725	-		GFF5084	0.14	-2.2
5,076,740	-		GFF5084	0.15	-0.8
5,076,742	-		GFF5084	0.16	-2.0
5,076,751	-		GFF5084	0.17	+0.6
5,076,759	+		GFF5084	0.18	-1.0
5,076,764	+		GFF5084	0.18	+0.1
5,076,764	+		GFF5084	0.18	-1.6
5,076,764	+		GFF5084	0.18	-0.8
5,076,772	-		GFF5084	0.19	-0.6
5,076,772	-		GFF5084	0.19	-0.8
5,076,772	-		GFF5084	0.19	-0.9
5,076,772	-		GFF5084	0.19	-2.5
5,076,772	-		GFF5084	0.19	-0.3
5,076,772	-		GFF5084	0.19	-0.4
5,076,774	+		GFF5084	0.20	-0.1
5,076,774	+		GFF5084	0.20	+0.4
5,076,774	+		GFF5084	0.20	-0.7
5,076,779	+		GFF5084	0.20	-2.3
5,076,779	+		GFF5084	0.20	-1.8
5,076,782	-		GFF5084	0.21	-2.0
5,076,782	-		GFF5084	0.21	-0.3
5,076,782	-		GFF5084	0.21	-0.8
5,076,782	-		GFF5084	0.21	+0.5
5,076,787	-		GFF5084	0.21	-0.7
5,076,787	-		GFF5084	0.21	-0.8
5,076,787	-		GFF5084	0.21	-1.6
5,076,793	-		GFF5084	0.22	-2.4
5,076,843	+		GFF5084	0.28	-2.4
5,076,856	-		GFF5084	0.30	-0.0
5,076,874	+		GFF5084	0.32	+0.1
5,076,874	+		GFF5084	0.32	-1.2
5,076,874	+		GFF5084	0.32	-1.2
5,076,874	+		GFF5084	0.32	+0.1
5,076,874	+		GFF5084	0.32	-0.3
5,076,874	+		GFF5084	0.32	-0.9
5,076,874	+		GFF5084	0.32	+0.3
5,076,882	-		GFF5084	0.33	-0.8
5,076,882	-		GFF5084	0.33	-0.2
5,076,882	-		GFF5084	0.33	-1.1
5,076,882	-		GFF5084	0.33	-0.9
5,076,882	-		GFF5084	0.33	-1.7
5,076,882	-		GFF5084	0.33	-1.8
5,076,887	-		GFF5084	0.34	+0.2
5,076,888	+		GFF5084	0.34	+0.8
5,076,915	-		GFF5084	0.37	-1.3
5,076,915	-		GFF5084	0.37	-1.0
5,076,916	+		GFF5084	0.37	-0.9
5,076,937	+		GFF5084	0.40	-0.9
5,076,937	+		GFF5084	0.40	+0.2
5,076,938	+		GFF5084	0.40	-0.2
5,076,940	-		GFF5084	0.40	-1.3
5,076,940	-		GFF5084	0.40	-0.8
5,076,942	+		GFF5084	0.41	-1.6
5,076,945	-		GFF5084	0.41	+0.0
5,076,945	-		GFF5084	0.41	-1.1
5,076,959	-		GFF5084	0.43	-1.8
5,076,961	+		GFF5084	0.43	-1.6
5,076,961	+		GFF5084	0.43	-1.8