Strain Fitness in Sphingobium sp. HT1-2 around GFF5031

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,023,846	+		GFF5030	0.60	+0.7
5,023,851	+		GFF5030	0.60	+0.2
5,023,851	+		GFF5030	0.60	-0.2
5,023,851	+		GFF5030	0.60	-0.5
5,023,851	+		GFF5030	0.60	-0.9
5,023,851	+		GFF5030	0.60	-1.1
5,023,851	+		GFF5030	0.60	+0.3
5,023,851	-		GFF5030	0.60	-0.6
5,023,856	+		GFF5030	0.60	-0.9
5,023,859	-		GFF5030	0.60	-1.1
5,023,859	-		GFF5030	0.60	-0.5
5,023,859	-		GFF5030	0.60	-0.9
5,023,859	-		GFF5030	0.60	-0.6
5,023,859	-		GFF5030	0.60	-0.1
5,023,859	-		GFF5030	0.60	-1.2
5,023,859	-		GFF5030	0.60	-1.3
5,023,871	-		GFF5030	0.61	-0.6
5,023,874	+		GFF5030	0.61	-0.9
5,023,882	-		GFF5030	0.61	+1.0
5,023,882	-		GFF5030	0.61	-0.9
5,023,920	+		GFF5030	0.63	+0.4
5,023,935	+		GFF5030	0.63	-0.6
5,023,935	+		GFF5030	0.63	-1.2
5,023,938	-		GFF5030	0.64	+0.4
5,023,940	+		GFF5030	0.64	+0.7
5,023,948	-		GFF5030	0.64	-1.6
5,023,951	+		GFF5030	0.64	+0.1
5,023,959	-		GFF5030	0.64	+1.0
5,023,959	-		GFF5030	0.64	-0.5
5,023,969	+		GFF5030	0.65	-0.8
5,023,969	+		GFF5030	0.65	+0.0
5,023,974	+		GFF5030	0.65	-1.1
5,023,977	-		GFF5030	0.65	-0.6
5,023,982	+		GFF5030	0.65	-0.7
5,023,982	-		GFF5030	0.65	+0.8
5,023,982	-		GFF5030	0.65	+0.2
5,023,984	+		GFF5030	0.65	+1.0
5,023,992	-		GFF5030	0.66	+0.2
5,024,005	+		GFF5030	0.66	-1.2
5,024,010	+		GFF5030	0.66	+0.8
5,024,010	+		GFF5030	0.66	+1.0
5,024,011	-		GFF5030	0.66	+0.3
5,024,013	-		GFF5030	0.67	-0.6
5,024,013	-		GFF5030	0.67	+0.1
5,024,018	-		GFF5030	0.67	-0.4
5,024,026	+		GFF5030	0.67	+0.1
5,024,035	-		GFF5030	0.67	-0.1
5,024,044	-		GFF5030	0.68	-1.0
5,024,068	+		GFF5030	0.69	-1.3
5,024,074	+		GFF5030	0.69	+0.1
5,024,085	+		GFF5030	0.69	-1.3
5,024,091	-		GFF5030	0.70	-2.6
5,024,091	-		GFF5030	0.70	-1.9
5,024,122	+		GFF5030	0.71	-1.2
5,024,128	+		GFF5030	0.71	-0.9
5,024,134	-		GFF5030	0.71	-1.2
5,024,139	+		GFF5030	0.72	+0.3
5,024,141	+		GFF5030	0.72	+0.5
5,024,143	-		GFF5030	0.72	-0.1
5,024,146	+		GFF5030	0.72	+1.3
5,024,154	-		GFF5030	0.72	+1.3
5,024,154	-		GFF5030	0.72	-0.0
5,024,215	+		GFF5030	0.75	+1.1
5,024,223	-		GFF5030	0.75	+0.4
5,024,238	-		GFF5030	0.76	-0.5
5,024,251	+		GFF5030	0.76	-0.2
5,024,259	-		GFF5030	0.76	+0.2
5,024,260	+		GFF5030	0.76	+1.1
5,024,276	-		GFF5030	0.77	-1.1
5,024,276	-		GFF5030	0.77	-1.3
5,024,283	-		GFF5030	0.77	-1.3
5,024,293	-		GFF5030	0.78	+0.1
5,024,293	-		GFF5030	0.78	+0.8
5,024,308	+		GFF5030	0.78	-0.7
5,024,361	-		GFF5030	0.80	-1.5
5,024,362	+		GFF5030	0.80	-0.7
5,024,386	+		GFF5030	0.81	+0.2
5,024,433	+		GFF5030	0.83	-0.5
5,024,448	+		GFF5030	0.84	-0.8
5,024,448	+		GFF5030	0.84	-1.5
5,024,448	+		GFF5030	0.84	-1.0
5,024,448	+		GFF5030	0.84	-2.2
5,024,448	+		GFF5030	0.84	-0.4
5,024,453	+		GFF5030	0.84	-0.5
5,024,456	-		GFF5030	0.84	-2.1
5,024,456	-		GFF5030	0.84	-0.5
5,024,456	-		GFF5030	0.84	-0.1
5,024,456	-		GFF5030	0.84	+0.3
5,024,456	-		GFF5030	0.84	-1.0
5,024,456	-		GFF5030	0.84	-0.7
5,024,456	-		GFF5030	0.84	-0.9
5,024,473	-		GFF5030	0.85	-0.9
5,024,503	+		GFF5030	0.86	+0.5
5,024,511	-		GFF5030	0.86	+0.7
5,024,547	-		GFF5030	0.88	-0.1
5,024,566	+		GFF5030	0.89	-1.2
5,024,574	-		GFF5030	0.89	+1.7
5,024,578	-		GFF5030	0.89	-0.3
5,024,578	-		GFF5030	0.89	+0.4
5,024,581	+		GFF5030	0.89	+1.8
5,024,620	+				-0.2
5,024,620	+				-0.9
5,024,620	+				+1.2
5,024,628	-				-0.9
5,024,628	-				-0.6
5,024,632	+				-1.0
5,024,691	+				+1.1
5,024,708	+				-0.2
5,024,708	+				-0.6
5,024,708	+				+0.6
5,024,710	+				+1.8
5,024,710	+				+0.0
5,024,716	-				+0.3
5,024,716	-				-0.5
5,024,716	-				+1.1
5,024,750	-				-1.2
5,024,755	+				+0.1
5,024,755	-				+0.6
5,024,769	-				-0.7
5,024,772	+				-1.2
5,024,772	+				-0.1
5,024,772	+				-1.2
5,024,780	-				+0.0
5,024,812	+				+1.4
5,024,812	+				+0.5
5,024,820	-				-1.5
5,024,831	+				+0.4
5,024,831	+				-0.5
5,024,831	+				+0.3
5,024,838	+				-0.1
5,024,848	-				+1.0
5,024,850	-				+0.7
5,024,860	-				+0.4
5,024,921	+				-0.4
5,024,947	+		GFF5031	0.11	+0.9
5,024,963	+		GFF5031	0.12	+1.1
5,024,968	+		GFF5031	0.13	-2.0
5,024,999	+		GFF5031	0.16	-1.0
5,025,002	+		GFF5031	0.16	-0.2
5,025,002	-		GFF5031	0.16	-0.0
5,025,005	-		GFF5031	0.17	-0.2
5,025,007	-		GFF5031	0.17	-1.4
5,025,022	-		GFF5031	0.19	-1.2
5,025,033	+		GFF5031	0.20	+1.0
5,025,120	+		GFF5031	0.29	-1.2
5,025,128	-		GFF5031	0.30	+0.0
5,025,153	+		GFF5031	0.32	-0.6
5,025,258	+		GFF5031	0.43	-1.7
5,025,278	+		GFF5031	0.45	-1.2
5,025,278	+		GFF5031	0.45	+0.3
5,025,278	+		GFF5031	0.45	-2.0
5,025,296	+		GFF5031	0.47	-0.9
5,025,296	-		GFF5031	0.47	+1.4
5,025,321	+		GFF5031	0.50	-0.3
5,025,321	+		GFF5031	0.50	+1.7
5,025,324	+		GFF5031	0.50	-0.0
5,025,324	+		GFF5031	0.50	-2.0
5,025,324	+		GFF5031	0.50	-0.5
5,025,324	+		GFF5031	0.50	-0.7
5,025,324	+		GFF5031	0.50	-1.6
5,025,324	+		GFF5031	0.50	+1.5
5,025,332	-		GFF5031	0.51	-0.9
5,025,332	-		GFF5031	0.51	+0.3
5,025,332	-		GFF5031	0.51	+0.4
5,025,332	-		GFF5031	0.51	+0.0
5,025,332	-		GFF5031	0.51	-1.2
5,025,332	-		GFF5031	0.51	-0.1
5,025,332	-		GFF5031	0.51	+0.5
5,025,353	+		GFF5031	0.53	+0.4
5,025,353	+		GFF5031	0.53	-1.3
5,025,353	+		GFF5031	0.53	-0.1
5,025,361	-		GFF5031	0.54	+0.4
5,025,361	-		GFF5031	0.54	+0.3
5,025,383	+		GFF5031	0.56	-0.7
5,025,391	-		GFF5031	0.57	-0.9
5,025,418	+		GFF5031	0.60	-0.6
5,025,435	+		GFF5031	0.62	-0.6
5,025,460	-		GFF5031	0.65	-0.9
5,025,499	+		GFF5031	0.69	+0.9
5,025,500	-		GFF5031	0.69	+1.3
5,025,500	-		GFF5031	0.69	+0.0
5,025,519	-		GFF5031	0.71	+0.8
5,025,526	+		GFF5031	0.72	+0.3
5,025,535	+		GFF5031	0.72	-1.1
5,025,535	+		GFF5031	0.72	-0.2
5,025,535	+		GFF5031	0.72	-1.6
5,025,543	-		GFF5031	0.73	-0.7
5,025,543	-		GFF5031	0.73	+1.7
5,025,572	+		GFF5031	0.76	+1.1
5,025,580	-		GFF5031	0.77	+0.4
5,025,608	-		GFF5031	0.80	-0.7
5,025,611	+		GFF5031	0.80	-2.3
5,025,613	-		GFF5031	0.81	+0.6
5,025,640	+		GFF5031	0.83	+0.5
5,025,648	-		GFF5031	0.84	-1.8
5,025,653	+		GFF5031	0.85	-1.6
5,025,653	+		GFF5031	0.85	-0.1
5,025,661	-		GFF5031	0.86	-1.1
5,025,671	+		GFF5031	0.87	+0.7
5,025,679	-		GFF5031	0.88	-1.2
5,025,679	-		GFF5031	0.88	-1.5
5,025,692	-		GFF5031	0.89	-2.1
5,025,698	+		GFF5031	0.90	-0.4
5,025,703	+				+0.4
5,025,708	+				-0.7
5,025,716	-				-0.7
5,025,724	+				-1.1
5,025,747	-				-1.4
5,025,749	+				-1.0
5,025,759	+				-0.7
5,025,759	+				+1.1
5,025,759	+				+0.6
5,025,781	+				+0.7
5,025,782	+				-1.2
5,025,795	-				+0.0
5,025,821	-				-1.1
5,025,821	-				+0.4
5,025,821	-				-0.2
5,025,854	+				+0.1
5,025,854	+				-0.6
5,025,854	+				+0.3
5,025,859	+				-1.9
5,025,859	+				-0.7
5,025,864	+				-0.1
5,025,864	+				-0.7
5,025,864	+				-1.0
5,025,867	-				+0.5
5,025,879	+				+0.1
5,025,879	+				+0.8
5,025,879	+				+1.4
5,025,887	-				-0.5
5,025,894	-				-1.2
5,025,916	+				+0.3
5,025,916	+				+0.9
5,025,922	-				+1.0
5,025,922	-				-1.1
5,025,922	-				+0.8
5,025,924	-				-0.7
5,025,927	+				+0.0
5,025,928	+				-0.1
5,025,971	-		GFF5032	0.10	-0.7
5,026,033	-		GFF5032	0.14	-0.8
5,026,036	+		GFF5032	0.14	+0.3
5,026,044	-		GFF5032	0.15	-0.2
5,026,044	-		GFF5032	0.15	-0.9
5,026,062	+		GFF5032	0.16	+0.8
5,026,070	-		GFF5032	0.16	-0.2
5,026,070	-		GFF5032	0.16	+0.9
5,026,074	+		GFF5032	0.17	-1.5
5,026,076	-		GFF5032	0.17	+0.7
5,026,076	-		GFF5032	0.17	-2.1
5,026,086	+		GFF5032	0.17	-0.6
5,026,089	-		GFF5032	0.17	-0.5
5,026,099	-		GFF5032	0.18	+0.3
5,026,118	+		GFF5032	0.19	-0.4
5,026,126	-		GFF5032	0.20	-0.5
5,026,126	-		GFF5032	0.20	+0.8
5,026,133	+		GFF5032	0.20	-1.8
5,026,138	+		GFF5032	0.20	-1.2
5,026,138	+		GFF5032	0.20	-0.6
5,026,138	+		GFF5032	0.20	-2.2
5,026,146	-		GFF5032	0.21	+0.6
5,026,146	-		GFF5032	0.21	-0.6
5,026,146	-		GFF5032	0.21	-0.5
5,026,146	-		GFF5032	0.21	+0.0
5,026,167	+		GFF5032	0.22	-0.2
5,026,167	+		GFF5032	0.22	-0.9
5,026,175	-		GFF5032	0.22	+0.0
5,026,175	-		GFF5032	0.22	-1.7
5,026,203	+		GFF5032	0.24	+0.5
5,026,204	-		GFF5032	0.24	-0.2
5,026,218	-		GFF5032	0.25	-1.4
5,026,223	-		GFF5032	0.25	-1.5
5,026,269	-		GFF5032	0.28	-0.9
5,026,354	+		GFF5032	0.33	+0.3
5,026,374	+		GFF5032	0.34	-0.3
5,026,374	+		GFF5032	0.34	-1.7
5,026,382	-		GFF5032	0.35	-1.5
5,026,382	-		GFF5032	0.35	+0.6
5,026,410	-		GFF5032	0.36	-0.7
5,026,411	+		GFF5032	0.36	+1.5
5,026,411	+		GFF5032	0.36	+0.5
5,026,419	-		GFF5032	0.37	-2.4
5,026,419	-		GFF5032	0.37	-1.0
5,026,419	-		GFF5032	0.37	-0.3
5,026,427	-		GFF5032	0.37	-0.2
5,026,432	-		GFF5032	0.38	-0.4
5,026,486	+		GFF5032	0.41	-1.5
5,026,487	-		GFF5032	0.41	+0.2
5,026,494	-		GFF5032	0.41	+0.2
5,026,499	-		GFF5032	0.42	+1.2
5,026,510	+		GFF5032	0.42	-1.1
5,026,510	+		GFF5032	0.42	-0.7
5,026,513	-		GFF5032	0.42	-1.2
5,026,513	-		GFF5032	0.42	-0.7
5,026,518	-		GFF5032	0.43	-1.4
5,026,518	-		GFF5032	0.43	-1.1
5,026,527	+		GFF5032	0.43	-1.5
5,026,553	+		GFF5032	0.45	+0.5
5,026,553	+		GFF5032	0.45	+0.2
5,026,553	+		GFF5032	0.45	+0.1
5,026,561	-		GFF5032	0.45	+0.5
5,026,561	-		GFF5032	0.45	-0.3
5,026,561	-		GFF5032	0.45	+0.5
5,026,561	-		GFF5032	0.45	+0.8
5,026,563	+		GFF5032	0.45	+0.8
5,026,563	+		GFF5032	0.45	-0.9
5,026,563	+		GFF5032	0.45	-1.4
5,026,563	+		GFF5032	0.45	-0.6
5,026,570	+		GFF5032	0.46	+1.4
5,026,604	-		GFF5032	0.48	-0.6
5,026,604	-		GFF5032	0.48	+0.1
5,026,605	+		GFF5032	0.48	-1.1
5,026,605	+		GFF5032	0.48	-0.0
5,026,607	+		GFF5032	0.48	-0.4
5,026,607	+		GFF5032	0.48	+1.4
5,026,607	+		GFF5032	0.48	+0.4
5,026,607	+		GFF5032	0.48	+0.7
5,026,613	-		GFF5032	0.48	+0.8
5,026,613	-		GFF5032	0.48	+0.8
5,026,614	-		GFF5032	0.48	-0.6
5,026,615	-		GFF5032	0.48	-0.1
5,026,615	-		GFF5032	0.48	-0.7
5,026,625	-		GFF5032	0.49	-1.7
5,026,635	+		GFF5032	0.50	-0.5
5,026,650	+		GFF5032	0.50	-0.9
5,026,653	-		GFF5032	0.51	+2.0
5,026,658	-		GFF5032	0.51	+1.0
5,026,687	+		GFF5032	0.53	+1.1
5,026,687	+		GFF5032	0.53	+0.3
5,026,698	+		GFF5032	0.53	+0.8
5,026,698	+		GFF5032	0.53	+0.6
5,026,711	-		GFF5032	0.54	-0.3
5,026,727	-		GFF5032	0.55	-0.5
5,026,778	+		GFF5032	0.58	-1.2
5,026,783	+		GFF5032	0.58	-0.6