Strain Fitness in Sphingobium sp. HT1-2 around GFF4964

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,960,823	-		GFF4963	0.49	+0.5
4,960,824	+		GFF4963	0.49	+0.2
4,960,825	+		GFF4963	0.49	-1.5
4,960,833	-		GFF4963	0.49	+0.8
4,960,844	-		GFF4963	0.50	+1.2
4,960,844	-		GFF4963	0.50	-1.0
4,960,853	+		GFF4963	0.50	-1.7
4,960,866	-		GFF4963	0.51	-1.5
4,960,878	+		GFF4963	0.52	-0.6
4,960,884	+		GFF4963	0.52	-1.0
4,960,884	+		GFF4963	0.52	-1.8
4,960,886	-		GFF4963	0.52	-0.0
4,960,887	-		GFF4963	0.52	-0.2
4,960,889	+		GFF4963	0.52	-0.7
4,960,892	-		GFF4963	0.52	-1.0
4,960,914	-		GFF4963	0.54	+0.2
4,960,915	+		GFF4963	0.54	-0.8
4,960,917	+		GFF4963	0.54	+0.3
4,960,917	+		GFF4963	0.54	-2.6
4,960,923	+		GFF4963	0.54	+0.3
4,960,932	-		GFF4963	0.55	-0.2
4,960,942	+		GFF4963	0.55	+0.7
4,960,942	+		GFF4963	0.55	-2.2
4,960,950	-		GFF4963	0.56	-2.3
4,960,950	-		GFF4963	0.56	-1.1
4,960,950	-		GFF4963	0.56	-0.5
4,960,964	-		GFF4963	0.56	-0.7
4,960,964	-		GFF4963	0.56	-1.0
4,960,974	-		GFF4963	0.57	-2.0
4,960,981	+		GFF4963	0.57	-0.4
4,960,981	+		GFF4963	0.57	-1.2
4,960,981	+		GFF4963	0.57	-1.4
4,960,981	+		GFF4963	0.57	-1.3
4,960,981	+		GFF4963	0.57	-0.4
4,960,981	+		GFF4963	0.57	-1.5
4,960,981	+		GFF4963	0.57	+0.6
4,960,981	+		GFF4963	0.57	-1.9
4,960,981	+		GFF4963	0.57	-2.1
4,960,981	+		GFF4963	0.57	-1.5
4,960,981	+		GFF4963	0.57	-1.0
4,960,981	+		GFF4963	0.57	-1.5
4,960,981	+		GFF4963	0.57	-2.1
4,960,981	+		GFF4963	0.57	-1.7
4,960,989	-		GFF4963	0.58	-0.8
4,960,989	-		GFF4963	0.58	+0.7
4,960,989	-		GFF4963	0.58	+0.4
4,960,989	-		GFF4963	0.58	-0.8
4,960,989	-		GFF4963	0.58	+0.3
4,960,989	-		GFF4963	0.58	-0.8
4,960,989	-		GFF4963	0.58	-1.3
4,960,989	-		GFF4963	0.58	+1.2
4,960,989	-		GFF4963	0.58	+0.0
4,960,989	-		GFF4963	0.58	-0.6
4,960,989	-		GFF4963	0.58	+1.6
4,960,989	-		GFF4963	0.58	-1.0
4,960,989	-		GFF4963	0.58	-0.8
4,960,989	-		GFF4963	0.58	-1.7
4,960,994	-		GFF4963	0.58	-1.4
4,961,027	+		GFF4963	0.60	-1.1
4,961,027	+		GFF4963	0.60	-0.1
4,961,027	+		GFF4963	0.60	-1.2
4,961,027	+		GFF4963	0.60	-0.4
4,961,027	+		GFF4963	0.60	-1.1
4,961,027	+		GFF4963	0.60	-0.1
4,961,027	+		GFF4963	0.60	+1.9
4,961,027	+		GFF4963	0.60	-1.3
4,961,027	+		GFF4963	0.60	-0.3
4,961,027	+		GFF4963	0.60	-1.9
4,961,027	+		GFF4963	0.60	-1.4
4,961,027	+		GFF4963	0.60	-0.9
4,961,027	+		GFF4963	0.60	-1.1
4,961,027	+		GFF4963	0.60	-0.8
4,961,027	+		GFF4963	0.60	-1.2
4,961,027	+		GFF4963	0.60	-2.2
4,961,027	+		GFF4963	0.60	-0.9
4,961,027	+		GFF4963	0.60	-0.9
4,961,028	+		GFF4963	0.60	-1.0
4,961,030	-		GFF4963	0.60	-2.1
4,961,030	-		GFF4963	0.60	-1.4
4,961,035	-		GFF4963	0.60	-0.3
4,961,035	-		GFF4963	0.60	+0.4
4,961,035	-		GFF4963	0.60	-0.1
4,961,035	-		GFF4963	0.60	-1.0
4,961,035	-		GFF4963	0.60	-1.3
4,961,035	-		GFF4963	0.60	+0.1
4,961,035	-		GFF4963	0.60	-1.8
4,961,035	-		GFF4963	0.60	-0.3
4,961,035	-		GFF4963	0.60	-2.2
4,961,035	-		GFF4963	0.60	+0.1
4,961,035	-		GFF4963	0.60	+0.3
4,961,035	-		GFF4963	0.60	-2.6
4,961,035	-		GFF4963	0.60	-1.1
4,961,035	-		GFF4963	0.60	-1.6
4,961,035	-		GFF4963	0.60	-0.9
4,961,037	+		GFF4963	0.60	-0.7
4,961,037	+		GFF4963	0.60	-1.6
4,961,037	+		GFF4963	0.60	-2.6
4,961,037	+		GFF4963	0.60	+1.0
4,961,037	+		GFF4963	0.60	-0.0
4,961,037	+		GFF4963	0.60	-1.3
4,961,037	-		GFF4963	0.60	-1.0
4,961,040	-		GFF4963	0.61	-0.7
4,961,045	-		GFF4963	0.61	-0.3
4,961,045	-		GFF4963	0.61	-2.0
4,961,045	-		GFF4963	0.61	+0.2
4,961,045	-		GFF4963	0.61	-1.9
4,961,045	-		GFF4963	0.61	-1.2
4,961,045	-		GFF4963	0.61	-0.4
4,961,050	-		GFF4963	0.61	-0.8
4,961,055	-		GFF4963	0.61	-1.5
4,961,057	+		GFF4963	0.61	+0.6
4,961,057	+		GFF4963	0.61	-0.8
4,961,057	+		GFF4963	0.61	-0.4
4,961,068	+		GFF4963	0.62	-2.2
4,961,068	+		GFF4963	0.62	-0.0
4,961,068	+		GFF4963	0.62	+0.1
4,961,068	+		GFF4963	0.62	+1.0
4,961,068	+		GFF4963	0.62	-0.1
4,961,068	+		GFF4963	0.62	+0.4
4,961,071	-		GFF4963	0.62	+0.5
4,961,073	+		GFF4963	0.62	-0.8
4,961,076	-		GFF4963	0.62	+0.7
4,961,076	-		GFF4963	0.62	-0.3
4,961,076	-		GFF4963	0.62	-0.1
4,961,088	-		GFF4963	0.63	+0.3
4,961,091	+		GFF4963	0.63	-0.5
4,961,138	-		GFF4963	0.66	+0.8
4,961,151	+		GFF4963	0.67	-1.1
4,961,151	+		GFF4963	0.67	-0.0
4,961,159	-		GFF4963	0.67	-0.3
4,961,159	-		GFF4963	0.67	+0.6
4,961,159	-		GFF4963	0.67	-0.3
4,961,159	-		GFF4963	0.67	+0.8
4,961,159	-		GFF4963	0.67	-1.2
4,961,189	+		GFF4963	0.69	-1.4
4,961,193	+		GFF4963	0.69	+0.3
4,961,197	-		GFF4963	0.69	-1.4
4,961,197	-		GFF4963	0.69	-2.0
4,961,197	-		GFF4963	0.69	-1.0
4,961,258	+		GFF4963	0.72	-1.0
4,961,266	-		GFF4963	0.73	-0.1
4,961,271	-		GFF4963	0.73	-0.1
4,961,323	+		GFF4963	0.76	+0.3
4,961,328	+		GFF4963	0.76	-0.2
4,961,329	+		GFF4963	0.76	-0.1
4,961,329	+		GFF4963	0.76	-0.1
4,961,329	+		GFF4963	0.76	-0.4
4,961,329	+		GFF4963	0.76	+0.7
4,961,329	+		GFF4963	0.76	-1.4
4,961,336	-		GFF4963	0.77	-2.1
4,961,337	-		GFF4963	0.77	-1.3
4,961,337	-		GFF4963	0.77	-1.6
4,961,337	-		GFF4963	0.77	+0.2
4,961,337	-		GFF4963	0.77	-1.6
4,961,339	+		GFF4963	0.77	-1.4
4,961,340	+		GFF4963	0.77	+0.3
4,961,350	+		GFF4963	0.78	-3.3
4,961,350	+		GFF4963	0.78	-1.0
4,961,357	-		GFF4963	0.78	-1.8
4,961,358	-		GFF4963	0.78	-0.3
4,961,386	-		GFF4963	0.79	+0.2
4,961,410	+		GFF4963	0.81	-0.3
4,961,410	+		GFF4963	0.81	-0.8
4,961,410	+		GFF4963	0.81	-0.0
4,961,415	+		GFF4963	0.81	+0.6
4,961,415	+		GFF4963	0.81	-0.8
4,961,418	-		GFF4963	0.81	-0.7
4,961,418	-		GFF4963	0.81	-0.2
4,961,423	-		GFF4963	0.82	-0.8
4,961,423	-		GFF4963	0.82	-1.4
4,961,433	-		GFF4963	0.82	-1.7
4,961,433	-		GFF4963	0.82	-1.2
4,961,433	-		GFF4963	0.82	+1.3
4,961,435	+		GFF4963	0.82	-0.0
4,961,437	+		GFF4963	0.82	-1.8
4,961,443	-		GFF4963	0.83	-1.4
4,961,443	-		GFF4963	0.83	+0.5
4,961,443	-		GFF4963	0.83	+1.4
4,961,454	+		GFF4963	0.83	-2.5
4,961,465	+		GFF4963	0.84	-0.0
4,961,476	+		GFF4963	0.84	-0.1
4,961,476	+		GFF4963	0.84	-1.4
4,961,484	-		GFF4963	0.85	-1.0
4,961,493	+		GFF4963	0.85	-1.2
4,961,493	+		GFF4963	0.85	+1.3
4,961,513	+		GFF4963	0.86	-1.2
4,961,518	+		GFF4963	0.87	-0.4
4,961,560	-		GFF4963	0.89	-1.7
4,961,574	-		GFF4963	0.90	-0.7
4,961,583	+				-0.8
4,961,593	+				-0.1
4,961,643	-				-1.0
4,961,689	-				-1.0
4,961,691	-				+0.6
4,961,691	-				-1.3
4,961,715	+				-1.2
4,961,723	-				-0.1
4,961,769	-				-2.8
4,961,779	-				-1.1
4,961,779	-				-1.7
4,961,825	-				-0.3
4,961,848	+				-2.6
4,961,848	+				-1.2
4,961,848	+				-0.8
4,961,856	-				-0.9
4,961,856	-				-1.0
4,961,856	-				+0.5
4,961,908	+		GFF4964	0.12	-1.6
4,961,914	-		GFF4964	0.13	-0.1
4,961,918	+		GFF4964	0.13	-2.4
4,961,918	+		GFF4964	0.13	-0.8
4,961,926	-		GFF4964	0.14	-0.6
4,961,942	+		GFF4964	0.16	-1.5
4,961,950	-		GFF4964	0.17	-1.2
4,961,950	-		GFF4964	0.17	-0.9
4,961,950	-		GFF4964	0.17	-1.4
4,961,950	-		GFF4964	0.17	-1.1
4,961,971	-		GFF4964	0.20	-1.9
4,961,983	-		GFF4964	0.22	-0.8
4,961,994	+		GFF4964	0.23	-2.2
4,962,000	+		GFF4964	0.24	-0.7
4,962,034	-		GFF4964	0.28	-0.0
4,962,040	-		GFF4964	0.29	-0.7
4,962,066	-		GFF4964	0.33	-1.3
4,962,068	+		GFF4964	0.33	+1.6
4,962,071	-		GFF4964	0.33	-2.0
4,962,076	-		GFF4964	0.34	+0.0
4,962,076	-		GFF4964	0.34	-1.7
4,962,076	-		GFF4964	0.34	-0.8
4,962,101	-		GFF4964	0.37	+1.1
4,962,101	-		GFF4964	0.37	-1.1
4,962,101	-		GFF4964	0.37	+0.2
4,962,117	+		GFF4964	0.39	-0.8
4,962,124	-		GFF4964	0.40	-0.2
4,962,125	-		GFF4964	0.40	-1.6
4,962,125	-		GFF4964	0.40	-2.1
4,962,127	+		GFF4964	0.41	-1.7
4,962,127	+		GFF4964	0.41	-1.0
4,962,127	+		GFF4964	0.41	-1.0
4,962,135	-		GFF4964	0.42	-2.0
4,962,135	-		GFF4964	0.42	-0.8
4,962,152	+		GFF4964	0.44	+0.5
4,962,152	+		GFF4964	0.44	-0.7
4,962,152	+		GFF4964	0.44	+0.3
4,962,154	+		GFF4964	0.44	-1.4
4,962,156	+		GFF4964	0.44	+0.3
4,962,156	+		GFF4964	0.44	+0.1
4,962,156	+		GFF4964	0.44	-1.4
4,962,160	-		GFF4964	0.45	-1.0
4,962,160	-		GFF4964	0.45	-0.4
4,962,160	-		GFF4964	0.45	-2.1
4,962,160	-		GFF4964	0.45	-0.6
4,962,164	+		GFF4964	0.45	-0.2
4,962,172	-		GFF4964	0.46	-1.5
4,962,172	-		GFF4964	0.46	-3.0
4,962,172	-		GFF4964	0.46	-0.0
4,962,172	-		GFF4964	0.46	-1.7
4,962,183	+		GFF4964	0.48	-1.4
4,962,186	-		GFF4964	0.48	-1.8
4,962,186	-		GFF4964	0.48	-0.1
4,962,191	-		GFF4964	0.49	-0.2
4,962,191	-		GFF4964	0.49	-1.9
4,962,191	-		GFF4964	0.49	-1.9
4,962,191	-		GFF4964	0.49	-0.4
4,962,191	-		GFF4964	0.49	-0.6
4,962,192	-		GFF4964	0.49	-1.7
4,962,206	-		GFF4964	0.51	+0.6
4,962,206	-		GFF4964	0.51	-1.7
4,962,213	+		GFF4964	0.52	-2.1
4,962,221	-		GFF4964	0.53	-0.2
4,962,221	-		GFF4964	0.53	-2.2
4,962,235	+		GFF4964	0.55	-0.8
4,962,237	+		GFF4964	0.55	-2.2
4,962,243	-		GFF4964	0.56	-1.0
4,962,250	-		GFF4964	0.57	-1.0
4,962,274	+		GFF4964	0.60	-2.7
4,962,274	-		GFF4964	0.60	-0.7
4,962,292	+		GFF4964	0.62	-1.7
4,962,297	+		GFF4964	0.63	-1.2
4,962,350	+		GFF4964	0.70	-2.1
4,962,366	+		GFF4964	0.72	-0.8
4,962,372	+		GFF4964	0.73	-0.5
4,962,387	+		GFF4964	0.75	-0.7
4,962,387	+		GFF4964	0.75	-2.6
4,962,387	+		GFF4964	0.75	-0.9
4,962,387	+		GFF4964	0.75	-0.6
4,962,387	+		GFF4964	0.75	+0.2
4,962,387	+		GFF4964	0.75	-1.9
4,962,387	+		GFF4964	0.75	-0.6
4,962,387	+		GFF4964	0.75	+0.7
4,962,387	+		GFF4964	0.75	-0.2
4,962,387	+		GFF4964	0.75	-1.7
4,962,387	+		GFF4964	0.75	+0.6
4,962,395	-		GFF4964	0.76	-0.9
4,962,395	-		GFF4964	0.76	-1.2
4,962,395	-		GFF4964	0.76	-2.4
4,962,395	-		GFF4964	0.76	+0.3
4,962,395	-		GFF4964	0.76	-0.7
4,962,395	-		GFF4964	0.76	-0.3
4,962,395	-		GFF4964	0.76	+0.0
4,962,395	-		GFF4964	0.76	-0.0
4,962,395	-		GFF4964	0.76	-0.5
4,962,405	-		GFF4964	0.77	-0.3
4,962,410	-		GFF4964	0.78	-3.1
4,962,444	-		GFF4964	0.82	-0.6
4,962,453	-		GFF4964	0.83	-1.3
4,962,453	-		GFF4964	0.83	-0.7
4,962,454	+		GFF4964	0.83	-1.9
4,962,462	-		GFF4964	0.85	-2.5
4,962,494	-		GFF4964	0.89	+0.0
4,962,499	+		GFF4964	0.89	-2.4
4,962,499	+		GFF4964	0.89	-0.1
4,962,503	+				-0.5
4,962,504	+				-1.4
4,962,529	-				-0.1
4,962,535	+				-2.8
4,962,543	-				-2.3
4,962,550	-				+0.1
4,962,565	+				+0.2
4,962,565	+				-1.8
4,962,570	+				-2.5
4,962,573	+				-1.1
4,962,581	+				-1.4
4,962,589	-				-0.8
4,962,597	+				-2.3
4,962,597	+				-2.2
4,962,605	-				+0.1
4,962,617	+				+0.6
4,962,617	+				-0.1
4,962,625	-				-0.0
4,962,631	+				-1.1
4,962,648	-		GFF4965	0.11	+0.3
4,962,648	-		GFF4965	0.11	-0.4
4,962,650	+		GFF4965	0.11	+0.1
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