Strain Fitness in Sphingobium sp. HT1-2 around GFF4914

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,904,988	-				-0.7
4,904,998	+				-0.6
4,905,015	+				-1.0
4,905,023	+				-1.6
4,905,023	-				-1.8
4,905,028	-				-1.9
4,905,072	+				-0.4
4,905,072	+				-0.6
4,905,074	-				+0.3
4,905,080	-		GFF4913	0.10	-1.1
4,905,080	-		GFF4913	0.10	-0.4
4,905,080	-		GFF4913	0.10	-2.3
4,905,152	+		GFF4913	0.17	-1.4
4,905,199	+		GFF4913	0.22	+1.2
4,905,211	+		GFF4913	0.23	-1.2
4,905,214	-		GFF4913	0.23	-2.1
4,905,214	-		GFF4913	0.23	+0.9
4,905,220	+		GFF4913	0.24	-0.8
4,905,220	+		GFF4913	0.24	-0.9
4,905,250	-		GFF4913	0.27	-2.0
4,905,267	+		GFF4913	0.29	-1.2
4,905,275	-		GFF4913	0.29	-1.6
4,905,275	-		GFF4913	0.29	-0.3
4,905,323	-		GFF4913	0.34	-2.3
4,905,323	-		GFF4913	0.34	-0.3
4,905,343	+		GFF4913	0.36	-2.2
4,905,348	+		GFF4913	0.37	+0.2
4,905,352	-		GFF4913	0.37	-1.2
4,905,377	-		GFF4913	0.39	-0.8
4,905,397	+		GFF4913	0.41	-1.5
4,905,397	+		GFF4913	0.41	-0.6
4,905,399	+		GFF4913	0.42	+0.2
4,905,414	+		GFF4913	0.43	-0.7
4,905,414	+		GFF4913	0.43	-0.1
4,905,414	+		GFF4913	0.43	-1.9
4,905,414	+		GFF4913	0.43	-1.8
4,905,414	+		GFF4913	0.43	-0.9
4,905,414	+		GFF4913	0.43	-0.3
4,905,414	+		GFF4913	0.43	-1.4
4,905,414	+		GFF4913	0.43	+0.2
4,905,422	-		GFF4913	0.44	-2.2
4,905,422	-		GFF4913	0.44	-0.7
4,905,422	-		GFF4913	0.44	-1.9
4,905,422	-		GFF4913	0.44	+0.4
4,905,422	-		GFF4913	0.44	+0.4
4,905,422	-		GFF4913	0.44	+0.4
4,905,422	-		GFF4913	0.44	+0.9
4,905,424	+		GFF4913	0.44	-0.6
4,905,424	+		GFF4913	0.44	-0.3
4,905,432	-		GFF4913	0.45	-0.3
4,905,433	+		GFF4913	0.45	-0.5
4,905,433	+		GFF4913	0.45	-1.6
4,905,441	-		GFF4913	0.46	-1.2
4,905,461	+		GFF4913	0.48	-0.4
4,905,461	+		GFF4913	0.48	+0.2
4,905,482	-		GFF4913	0.50	-0.7
4,905,497	+		GFF4913	0.51	-0.9
4,905,497	+		GFF4913	0.51	-1.9
4,905,505	-		GFF4913	0.52	-0.7
4,905,505	-		GFF4913	0.52	-0.8
4,905,505	-		GFF4913	0.52	-1.3
4,905,505	-		GFF4913	0.52	-1.5
4,905,512	+		GFF4913	0.53	-2.2
4,905,512	+		GFF4913	0.53	-0.5
4,905,512	+		GFF4913	0.53	-0.9
4,905,520	-		GFF4913	0.54	+0.2
4,905,532	+		GFF4913	0.55	+0.4
4,905,538	+		GFF4913	0.55	-1.2
4,905,546	-		GFF4913	0.56	-0.9
4,905,570	+		GFF4913	0.58	+0.1
4,905,584	-		GFF4913	0.60	-0.7
4,905,584	-		GFF4913	0.60	-0.7
4,905,600	+		GFF4913	0.61	-0.4
4,905,600	+		GFF4913	0.61	-1.1
4,905,600	+		GFF4913	0.61	+0.9
4,905,600	+		GFF4913	0.61	-2.0
4,905,600	+		GFF4913	0.61	-0.5
4,905,600	+		GFF4913	0.61	-1.6
4,905,600	+		GFF4913	0.61	-0.3
4,905,608	-		GFF4913	0.62	-1.1
4,905,608	-		GFF4913	0.62	-1.8
4,905,608	-		GFF4913	0.62	-0.1
4,905,608	-		GFF4913	0.62	-1.5
4,905,620	+		GFF4913	0.63	-0.6
4,905,641	+		GFF4913	0.65	-0.2
4,905,683	+		GFF4913	0.70	-0.2
4,905,683	+		GFF4913	0.70	-0.9
4,905,688	+		GFF4913	0.70	+0.3
4,905,691	-		GFF4913	0.70	-0.7
4,905,691	-		GFF4913	0.70	-1.2
4,905,708	-		GFF4913	0.72	-0.6
4,905,711	+		GFF4913	0.72	-1.3
4,905,711	+		GFF4913	0.72	-0.8
4,905,711	+		GFF4913	0.72	-0.3
4,905,719	-		GFF4913	0.73	-0.4
4,905,719	-		GFF4913	0.73	-0.9
4,905,719	-		GFF4913	0.73	-0.7
4,905,719	-		GFF4913	0.73	-0.6
4,905,719	-		GFF4913	0.73	-1.1
4,905,719	-		GFF4913	0.73	-1.7
4,905,720	-		GFF4913	0.73	-0.7
4,905,722	+		GFF4913	0.73	+0.6
4,905,730	-		GFF4913	0.74	-0.2
4,905,740	-		GFF4913	0.75	-1.1
4,905,749	+		GFF4913	0.76	-0.4
4,905,749	+		GFF4913	0.76	-1.4
4,905,749	+		GFF4913	0.76	-1.2
4,905,775	+		GFF4913	0.79	-1.0
4,905,776	+		GFF4913	0.79	-2.0
4,905,819	-		GFF4913	0.83	-0.5
4,905,824	-		GFF4913	0.84	+0.1
4,905,856	-		GFF4913	0.87	-0.8
4,905,867	+		GFF4913	0.88	-1.2
4,905,867	+		GFF4913	0.88	-2.3
4,905,875	-		GFF4913	0.89	-2.8
4,905,880	-		GFF4913	0.89	-1.6
4,905,885	+		GFF4913	0.90	-0.4
4,905,888	-		GFF4913	0.90	-0.8
4,905,890	+				-1.9
4,905,895	+				-0.3
4,905,895	+				-0.1
4,905,898	-				-0.9
4,905,908	-				-1.2
4,905,912	+				-0.1
4,905,912	+				-0.5
4,905,920	-				-0.9
4,905,920	-				+0.4
4,905,920	-				-0.8
4,905,920	-				+0.8
4,905,921	-				-1.7
4,905,942	+				-1.8
4,905,957	+				-0.6
4,905,957	+				+0.6
4,905,965	-				-0.2
4,905,965	-				+0.1
4,905,965	-				-0.6
4,905,965	-				+0.5
4,906,020	+				-0.9
4,906,020	+				-0.2
4,906,020	+				-1.1
4,906,020	+				-0.6
4,906,020	+				-1.1
4,906,027	-				-0.9
4,906,034	+				-0.7
4,906,038	-				+0.3
4,906,039	+				+0.6
4,906,049	+				-2.0
4,906,049	+				-0.6
4,906,049	+				+1.0
4,906,049	+				-0.4
4,906,049	+				-0.5
4,906,049	+				+0.0
4,906,049	+				-0.2
4,906,049	+				+0.8
4,906,050	+				-0.3
4,906,050	+				-0.4
4,906,057	-				-1.4
4,906,057	-				+0.3
4,906,057	-				-1.6
4,906,057	-				+0.3
4,906,057	-				+0.3
4,906,057	-				-0.1
4,906,057	-				+0.1
4,906,057	-				-0.3
4,906,057	-				-0.4
4,906,057	-				+0.1
4,906,057	-				-2.2
4,906,063	-				-1.3
4,906,063	-				-2.2
4,906,077	+				-1.2
4,906,085	-				-0.7
4,906,092	-				-0.8
4,906,140	+		GFF4914	0.12	+0.4
4,906,140	-		GFF4914	0.12	-2.2
4,906,145	+		GFF4914	0.13	-0.1
4,906,145	+		GFF4914	0.13	-1.1
4,906,145	+		GFF4914	0.13	-0.7
4,906,145	+		GFF4914	0.13	-1.2
4,906,145	+		GFF4914	0.13	-1.2
4,906,150	+		GFF4914	0.13	-1.2
4,906,153	-		GFF4914	0.13	+0.3
4,906,153	-		GFF4914	0.13	-1.9
4,906,153	-		GFF4914	0.13	+0.3
4,906,153	-		GFF4914	0.13	+0.6
4,906,178	+		GFF4914	0.15	-1.6
4,906,186	-		GFF4914	0.16	+0.6
4,906,186	-		GFF4914	0.16	-0.1
4,906,188	-		GFF4914	0.16	-1.1
4,906,188	-		GFF4914	0.16	-0.6
4,906,188	-		GFF4914	0.16	+0.0
4,906,202	+		GFF4914	0.17	-0.2
4,906,228	+		GFF4914	0.19	-1.5
4,906,228	+		GFF4914	0.19	-1.1
4,906,228	+		GFF4914	0.19	-1.4
4,906,228	+		GFF4914	0.19	-1.3
4,906,233	+		GFF4914	0.20	-1.5
4,906,233	+		GFF4914	0.20	-1.9
4,906,233	+		GFF4914	0.20	+0.3
4,906,234	+		GFF4914	0.20	+0.3
4,906,238	+		GFF4914	0.20	+0.7
4,906,238	+		GFF4914	0.20	-0.8
4,906,238	+		GFF4914	0.20	-0.3
4,906,238	+		GFF4914	0.20	-1.0
4,906,243	+		GFF4914	0.20	-2.0
4,906,246	-		GFF4914	0.21	+1.4
4,906,246	-		GFF4914	0.21	+0.2
4,906,246	-		GFF4914	0.21	-0.9
4,906,246	-		GFF4914	0.21	-1.9
4,906,246	-		GFF4914	0.21	-0.5
4,906,246	-		GFF4914	0.21	-1.5
4,906,246	-		GFF4914	0.21	-0.7
4,906,246	-		GFF4914	0.21	+0.3
4,906,246	-		GFF4914	0.21	-1.1
4,906,258	-		GFF4914	0.22	-1.2
4,906,268	-		GFF4914	0.22	-1.7
4,906,272	-		GFF4914	0.23	-0.4
4,906,281	-		GFF4914	0.23	+0.2
4,906,292	+		GFF4914	0.24	-1.1
4,906,293	-		GFF4914	0.24	+0.2
4,906,303	-		GFF4914	0.25	-0.2
4,906,303	-		GFF4914	0.25	-0.8
4,906,321	+		GFF4914	0.27	-1.4
4,906,348	-		GFF4914	0.29	-0.2
4,906,350	+		GFF4914	0.29	-0.9
4,906,368	+		GFF4914	0.30	-0.7
4,906,368	+		GFF4914	0.30	-1.5
4,906,368	+		GFF4914	0.30	+0.9
4,906,368	+		GFF4914	0.30	-1.6
4,906,373	+		GFF4914	0.31	+0.4
4,906,373	+		GFF4914	0.31	-2.6
4,906,376	-		GFF4914	0.31	-1.7
4,906,376	-		GFF4914	0.31	-0.2
4,906,381	-		GFF4914	0.31	-2.5
4,906,381	-		GFF4914	0.31	-0.7
4,906,381	-		GFF4914	0.31	-1.4
4,906,394	+		GFF4914	0.32	-0.7
4,906,409	+		GFF4914	0.34	-1.7
4,906,409	+		GFF4914	0.34	+0.3
4,906,450	+		GFF4914	0.37	-0.9
4,906,459	+		GFF4914	0.38	-1.5
4,906,459	+		GFF4914	0.38	-0.5
4,906,459	+		GFF4914	0.38	-1.2
4,906,459	+		GFF4914	0.38	-1.2
4,906,459	+		GFF4914	0.38	-2.3
4,906,459	+		GFF4914	0.38	+0.0
4,906,460	-		GFF4914	0.38	-0.9
4,906,460	-		GFF4914	0.38	-1.6
4,906,467	-		GFF4914	0.38	-0.9
4,906,467	-		GFF4914	0.38	-0.8
4,906,467	-		GFF4914	0.38	+0.7
4,906,490	+		GFF4914	0.40	-1.2
4,906,490	+		GFF4914	0.40	+0.3
4,906,490	+		GFF4914	0.40	+0.4
4,906,490	+		GFF4914	0.40	+0.1
4,906,490	+		GFF4914	0.40	-2.0
4,906,490	+		GFF4914	0.40	-1.6
4,906,490	+		GFF4914	0.40	-1.7
4,906,498	-		GFF4914	0.41	-1.3
4,906,498	-		GFF4914	0.41	-0.9
4,906,498	-		GFF4914	0.41	-1.3
4,906,514	+		GFF4914	0.42	+0.2
4,906,519	+		GFF4914	0.42	-0.9
4,906,524	+		GFF4914	0.43	+1.6
4,906,524	+		GFF4914	0.43	-1.8
4,906,524	+		GFF4914	0.43	-0.6
4,906,524	+		GFF4914	0.43	-1.6
4,906,532	-		GFF4914	0.43	+0.4
4,906,532	-		GFF4914	0.43	+0.4
4,906,532	-		GFF4914	0.43	-1.6
4,906,532	-		GFF4914	0.43	-1.3
4,906,538	-		GFF4914	0.44	-0.7
4,906,566	+		GFF4914	0.46	-0.9
4,906,571	+		GFF4914	0.46	-0.8
4,906,571	+		GFF4914	0.46	-2.2
4,906,579	-		GFF4914	0.47	-0.7
4,906,579	-		GFF4914	0.47	+0.8
4,906,581	+		GFF4914	0.47	-1.3
4,906,581	+		GFF4914	0.47	+0.3
4,906,581	+		GFF4914	0.47	-1.6
4,906,581	+		GFF4914	0.47	-0.2
4,906,589	-		GFF4914	0.48	-0.8
4,906,589	-		GFF4914	0.48	+0.5
4,906,608	-		GFF4914	0.49	-2.9
4,906,626	-		GFF4914	0.51	-1.8
4,906,633	-		GFF4914	0.51	+0.3
4,906,634	+		GFF4914	0.51	-0.2
4,906,634	+		GFF4914	0.51	-2.0
4,906,642	-		GFF4914	0.52	-0.2
4,906,645	+		GFF4914	0.52	-0.6
4,906,678	+		GFF4914	0.55	-0.9
4,906,678	+		GFF4914	0.55	-1.1
4,906,688	+		GFF4914	0.56	-1.5
4,906,688	+		GFF4914	0.56	+0.5
4,906,696	-		GFF4914	0.56	-0.3
4,906,696	-		GFF4914	0.56	-1.1
4,906,696	-		GFF4914	0.56	-1.5
4,906,696	-		GFF4914	0.56	-0.9
4,906,696	-		GFF4914	0.56	-1.0
4,906,696	-		GFF4914	0.56	-0.6
4,906,696	-		GFF4914	0.56	-1.1
4,906,712	+		GFF4914	0.58	-0.0
4,906,725	+		GFF4914	0.59	+0.4
4,906,733	-		GFF4914	0.59	-0.5
4,906,733	-		GFF4914	0.59	+0.3
4,906,733	-		GFF4914	0.59	-1.3
4,906,743	-		GFF4914	0.60	+1.6
4,906,761	+		GFF4914	0.62	-0.1
4,906,766	+		GFF4914	0.62	-0.5
4,906,768	+		GFF4914	0.62	-0.9
4,906,769	-		GFF4914	0.62	+0.5
4,906,776	-		GFF4914	0.63	-1.2
4,906,776	-		GFF4914	0.63	-0.4
4,906,804	-		GFF4914	0.65	-0.7
4,906,821	+		GFF4914	0.66	-2.4
4,906,821	+		GFF4914	0.66	-1.7
4,906,821	+		GFF4914	0.66	-1.5
4,906,823	-		GFF4914	0.67	-1.1
4,906,829	-		GFF4914	0.67	-0.5
4,906,842	-		GFF4914	0.68	-0.1
4,906,844	+		GFF4914	0.68	+0.4
4,906,854	+		GFF4914	0.69	-1.8
4,906,862	-		GFF4914	0.70	-0.5
4,906,883	-		GFF4914	0.71	-1.3
4,906,888	+		GFF4914	0.72	+0.0
4,906,896	-		GFF4914	0.72	-1.9
4,906,902	+		GFF4914	0.73	-3.7
4,906,924	+		GFF4914	0.75	-0.8
4,906,925	+		GFF4914	0.75	-1.5
4,906,937	+		GFF4914	0.76	+0.7
4,906,950	+		GFF4914	0.77	+1.4
4,906,952	+		GFF4914	0.77	-1.4
4,906,953	-		GFF4914	0.77	+1.4
4,906,963	-		GFF4914	0.78	+0.6
4,906,976	+		GFF4914	0.79	-1.3
4,906,981	+		GFF4914	0.79	-0.6
4,906,981	+		GFF4914	0.79	-1.4
4,906,981	+		GFF4914	0.79	-0.3
4,906,981	+		GFF4914	0.79	-1.4
4,906,981	+		GFF4914	0.79	-0.3
4,906,987	+		GFF4914	0.80	-1.6
4,906,989	-		GFF4914	0.80	+0.6
4,906,989	-		GFF4914	0.80	-0.2
4,906,989	-		GFF4914	0.80	-0.9
4,906,989	-		GFF4914	0.80	+0.1
4,906,998	-		GFF4914	0.80	-2.1
4,907,023	-		GFF4914	0.82	+0.6
4,907,036	+		GFF4914	0.83	+0.8
4,907,055	+		GFF4914	0.85	-0.2
4,907,067	+		GFF4914	0.86	-0.7
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4,907,083	+		GFF4914	0.87	-0.7
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4,907,125	+				-1.8
4,907,125	+				-1.1
4,907,127	+				-1.0
4,907,133	-				-1.6
4,907,170	+				-0.9
4,907,170	+				-1.8
4,907,170	+				+0.9
4,907,170	+				+0.2
4,907,178	-				-1.2
4,907,178	-				-1.0
4,907,178	-				-1.9
4,907,178	-				-1.8
4,907,178	-				-0.2
4,907,178	-				-0.9
4,907,180	+				-1.0
4,907,180	+				-0.2
4,907,180	+				-0.4
4,907,188	-				-0.4
4,907,188	-				+0.4
4,907,188	-				-0.2
4,907,188	-				-1.3
4,907,188	-				-1.2
4,907,228	+				-1.6
4,907,277	+				-0.7
4,907,277	+				-1.6
4,907,277	+				-1.3
4,907,277	+				-1.2
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4,907,285	-				+0.1
4,907,285	-				-0.2
4,907,285	-				-1.2
4,907,295	+				-1.1
4,907,296	+				-0.7
4,907,296	+				+0.3
4,907,296	+				+1.6
4,907,296	+				+0.6
4,907,303	-				-1.2
4,907,303	-				-0.2
4,907,304	-				-0.9
4,907,321	-				-0.6
4,907,323	-				-0.5
4,907,362	-		GFF4915	0.10	-1.2
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4,907,377	+		GFF4915	0.12	-2.1
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4,907,559	+		GFF4915	0.32	-1.2
4,907,559	+		GFF4915	0.32	-0.8
4,907,559	+		GFF4915	0.32	-0.8
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4,907,567	-		GFF4915	0.33	-1.4
4,907,567	-		GFF4915	0.33	-1.2
4,907,567	-		GFF4915	0.33	-1.1
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4,907,659	-		GFF4915	0.43	-2.2
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4,907,696	-		GFF4915	0.47	-2.1
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4,907,793	-		GFF4915	0.58	-0.7
4,907,793	-		GFF4915	0.58	-2.1
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4,907,793	-		GFF4915	0.58	-1.7
4,907,793	-		GFF4915	0.58	+0.4
4,907,793	-		GFF4915	0.58	-0.7
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4,907,793	-		GFF4915	0.58	-0.8
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4,907,874	-		GFF4915	0.67	-1.8
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4,907,963	-		GFF4915	0.77	-0.4
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4,908,025	-		GFF4915	0.84	-2.1
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4,908,040	-		GFF4915	0.85	-1.0
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4,908,062	-		GFF4915	0.88	-0.3
4,908,062	-		GFF4915	0.88	-2.1
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4,908,077	+		GFF4915	0.89	-0.9
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4,908,166	+				+0.3
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4,908,192	+				-1.9
4,908,192	+				+0.6
4,908,192	+				-0.4
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4,908,205	-				-0.8
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4,908,205	-				-1.2
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4,908,209	+				-1.1
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4,908,228	+				-1.1
4,908,228	+				+0.5
4,908,228	+				-1.4
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4,908,236	-				-1.3
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