Strain Fitness in Sphingobium sp. HT1-2 around GFF4853

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,836,354	-				+0.3
4,836,355	-				+1.7
4,836,357	+				-0.3
4,836,364	+				-0.7
4,836,372	+				-1.0
4,836,380	+				-0.1
4,836,380	+				-0.8
4,836,380	-				-0.2
4,836,380	-				+0.7
4,836,388	-				+0.5
4,836,388	-				+0.2
4,836,388	-				-0.3
4,836,388	-				-1.6
4,836,388	-				-0.0
4,836,407	+				-1.2
4,836,410	-				-0.5
4,836,415	-				+0.2
4,836,433	+				+0.6
4,836,459	-				-0.9
4,836,466	+				-0.6
4,836,473	+				-0.1
4,836,473	-				-0.9
4,836,476	+				+0.0
4,836,476	+				+0.3
4,836,484	-				-0.8
4,836,484	-				+1.6
4,836,484	-				-0.7
4,836,484	-				-1.5
4,836,484	-				-1.2
4,836,485	+				-0.6
4,836,485	+				+1.1
4,836,487	+				-1.3
4,836,493	-				-0.1
4,836,504	-				+1.1
4,836,506	-				-0.6
4,836,511	+				-1.6
4,836,511	+				-0.4
4,836,526	+				+1.0
4,836,552	-				+0.5
4,836,565	+				-0.6
4,836,573	-				+0.2
4,836,573	-				-1.0
4,836,573	-				-0.5
4,836,573	-				+0.9
4,836,573	-				+0.9
4,836,573	-				-1.0
4,836,573	-				+0.5
4,836,580	-				-0.2
4,836,585	+				-0.9
4,836,593	-				-1.0
4,836,593	-				-0.7
4,836,595	+				-0.1
4,836,597	-				-0.2
4,836,599	+				-0.4
4,836,601	-				-0.0
4,836,602	-				+0.7
4,836,604	+				+0.0
4,836,608	-				+0.1
4,836,612	-				+0.4
4,836,612	-				-0.3
4,836,650	-		GFF4852	0.15	-1.9
4,836,662	+		GFF4852	0.17	+0.2
4,836,662	-		GFF4852	0.17	+0.1
4,836,673	+		GFF4852	0.19	-2.1
4,836,678	+		GFF4852	0.20	-0.1
4,836,681	-		GFF4852	0.20	+0.9
4,836,681	-		GFF4852	0.20	-0.8
4,836,691	-		GFF4852	0.22	-0.3
4,836,693	+		GFF4852	0.22	+0.3
4,836,714	-		GFF4852	0.26	+0.0
4,836,719	-		GFF4852	0.27	-0.0
4,836,721	+		GFF4852	0.27	-1.8
4,836,739	-		GFF4852	0.31	-0.7
4,836,757	-		GFF4852	0.34	+0.2
4,836,757	-		GFF4852	0.34	+0.4
4,836,783	+		GFF4852	0.39	-0.0
4,836,789	+		GFF4852	0.40	+0.4
4,836,791	+		GFF4852	0.40	-1.5
4,836,797	-		GFF4852	0.41	-0.7
4,836,820	+		GFF4852	0.45	-0.3
4,836,820	+		GFF4852	0.45	+0.2
4,836,828	-		GFF4852	0.47	+1.5
4,836,828	-		GFF4852	0.47	-1.9
4,836,828	-		GFF4852	0.47	+0.8
4,836,830	-		GFF4852	0.47	+0.8
4,836,861	+		GFF4852	0.52	-1.4
4,836,881	-		GFF4852	0.56	-0.1
4,836,889	+		GFF4852	0.57	-0.7
4,836,937	-		GFF4852	0.66	-0.8
4,836,942	+		GFF4852	0.67	-0.8
4,836,948	+		GFF4852	0.68	-1.4
4,836,969	-		GFF4852	0.72	-0.8
4,836,989	-		GFF4852	0.75	-1.0
4,837,028	+		GFF4852	0.82	+1.2
4,837,045	+		GFF4852	0.85	-2.1
4,837,045	+		GFF4852	0.85	-0.8
4,837,053	-		GFF4852	0.87	-1.2
4,837,053	-		GFF4852	0.87	+0.6
4,837,053	-		GFF4852	0.87	-0.7
4,837,053	-		GFF4852	0.87	-0.7
4,837,053	-		GFF4852	0.87	-1.0
4,837,062	+		GFF4852	0.88	-0.2
4,837,062	+		GFF4852	0.88	-0.0
4,837,062	+		GFF4852	0.88	-0.5
4,837,070	-		GFF4852	0.90	+1.1
4,837,070	-		GFF4852	0.90	+0.3
4,837,070	-		GFF4852	0.90	+0.0
4,837,070	-		GFF4852	0.90	-1.3
4,837,070	-		GFF4852	0.90	-0.1
4,837,106	+				-0.6
4,837,112	-				-1.1
4,837,159	-				-0.9
4,837,180	+				+0.7
4,837,180	+				+0.1
4,837,185	+				-0.9
4,837,200	+				+0.4
4,837,204	+				+0.3
4,837,209	+				+1.1
4,837,210	+				-0.2
4,837,212	-				+0.2
4,837,212	-				+1.1
4,837,213	-				-1.2
4,837,222	-				-0.7
4,837,233	+				-0.4
4,837,241	-				+0.8
4,837,241	-				+0.8
4,837,268	-				-1.1
4,837,294	+				-0.0
4,837,294	+				-0.7
4,837,294	+				-0.9
4,837,294	+				-0.6
4,837,294	+				-1.9
4,837,297	+				+0.2
4,837,328	+				-1.3
4,837,344	+				-0.0
4,837,350	-				-1.9
4,837,380	-		GFF4853	0.16	-0.9
4,837,389	+		GFF4853	0.22	-0.9
4,837,416	-		GFF4853	0.37	-0.7
4,837,431	+		GFF4853	0.46	-0.3
4,837,431	+		GFF4853	0.46	-1.4
4,837,431	+		GFF4853	0.46	+1.3
4,837,431	+		GFF4853	0.46	-0.8
4,837,436	+		GFF4853	0.49	-0.7
4,837,453	+		GFF4853	0.59	-0.7
4,837,489	+		GFF4853	0.80	-1.3
4,837,516	+				-1.5
4,837,516	+				+1.0
4,837,564	+				+0.2
4,837,587	+				-1.2
4,837,592	+				+0.3
4,837,595	-				-0.2
4,837,595	-				-0.9
4,837,600	-				-0.7
4,837,641	+				+0.5
4,837,664	-				-0.9
4,837,678	+				-0.5
4,837,683	+				-0.8
4,837,698	+				+1.3
4,837,698	+				-0.3
4,837,703	+				+0.2
4,837,743	-				+0.4
4,837,743	-				-0.2
4,837,743	-				-0.1
4,837,801	-				-1.8
4,837,826	-				+0.2
4,837,841	-				-1.0
4,837,912	+				+1.3
4,837,912	+				-0.8
4,837,912	+				+1.3
4,837,920	-				-0.1
4,837,920	-				-0.0
4,837,921	-				+1.2
4,837,921	-				+0.2
4,837,924	+				-1.0
4,837,924	+				-0.6
4,837,936	+				+0.4
4,837,987	+				+0.1
4,837,995	-				-1.7
4,838,002	+				+0.4
4,838,002	+				-1.0
4,838,002	+				-1.0
4,838,010	-				+0.4
4,838,010	-				-1.4
4,838,010	-				+0.3
4,838,013	+				+0.0
4,838,045	-				+0.3
4,838,070	-				-0.8
4,838,124	-				+0.3
4,838,140	-				-1.0
4,838,144	+				-0.3
4,838,144	+				-1.0
4,838,149	+				+0.5
4,838,157	-				-0.0
4,838,157	-				-0.0
4,838,180	+				+0.1
4,838,180	+				+1.5
4,838,180	+				+0.7
4,838,180	+				+0.4
4,838,180	+				-0.8
4,838,180	+				-0.7
4,838,188	-				-0.1
4,838,188	-				-1.1
4,838,188	-				-1.9
4,838,188	-				-0.5
4,838,188	-				-1.6
4,838,188	-				-0.4
4,838,188	-				-0.7
4,838,188	-				+0.4
4,838,188	-				-0.2
4,838,188	-				-0.7
4,838,188	-				-0.0
4,838,188	-				+0.8
4,838,188	-				+1.1
4,838,188	-				+0.8
4,838,188	-				-1.6
4,838,188	-				-1.3
4,838,188	-				-0.7
4,838,188	-				-0.9
4,838,188	-				-0.1
4,838,188	-				-0.8
4,838,188	-				-1.3
4,838,188	-				-1.0
4,838,188	-				-0.1
4,838,188	-				-1.0
4,838,188	-				+0.7
4,838,188	-				-0.4
4,838,188	-				-0.2
4,838,188	-				+1.3
4,838,188	-				+0.3
4,838,188	-				-0.4
4,838,188	-				+1.1
4,838,188	-				+0.1
4,838,188	-				-1.2
4,838,188	-				-0.3
4,838,188	-				+0.8
4,838,188	-				+0.7
4,838,219	-		GFF4854	0.11	+0.0
4,838,259	-		GFF4854	0.12	+0.9
4,838,267	-		GFF4854	0.12	-1.6
4,838,275	-		GFF4854	0.12	-0.3
4,838,275	-		GFF4854	0.12	+0.1
4,838,282	-		GFF4854	0.12	-0.8
4,838,291	-		GFF4854	0.13	-0.9
4,838,301	+		GFF4854	0.13	+1.3
4,838,305	+		GFF4854	0.13	+0.0
4,838,305	+		GFF4854	0.13	-1.4
4,838,306	+		GFF4854	0.13	+0.9
4,838,308	-		GFF4854	0.13	-0.4
4,838,313	-		GFF4854	0.13	-1.7
4,838,318	-		GFF4854	0.14	-0.3
4,838,318	-		GFF4854	0.14	+0.5
4,838,318	-		GFF4854	0.14	-0.3
4,838,320	+		GFF4854	0.14	+2.5
4,838,328	-		GFF4854	0.14	+0.9
4,838,328	-		GFF4854	0.14	-0.2
4,838,328	-		GFF4854	0.14	+0.3
4,838,346	+		GFF4854	0.14	+0.4
4,838,346	+		GFF4854	0.14	+1.1
4,838,346	+		GFF4854	0.14	-0.6
4,838,348	+		GFF4854	0.14	-0.6
4,838,354	-		GFF4854	0.15	-0.8
4,838,354	-		GFF4854	0.15	-0.2
4,838,354	-		GFF4854	0.15	-0.0
4,838,354	-		GFF4854	0.15	+0.4
4,838,354	-		GFF4854	0.15	-0.3
4,838,364	-		GFF4854	0.15	-1.2
4,838,377	-		GFF4854	0.15	-1.9
4,838,379	+		GFF4854	0.15	-1.2
4,838,379	+		GFF4854	0.15	-1.9
4,838,379	+		GFF4854	0.15	+0.6
4,838,379	+		GFF4854	0.15	-1.6
4,838,379	+		GFF4854	0.15	-0.8
4,838,387	-		GFF4854	0.16	-0.4
4,838,387	-		GFF4854	0.16	-0.9
4,838,387	-		GFF4854	0.16	+1.7
4,838,422	+		GFF4854	0.17	-0.4
4,838,422	+		GFF4854	0.17	-0.4
4,838,428	-		GFF4854	0.17	-0.0
4,838,430	-		GFF4854	0.17	+1.3
4,838,439	+		GFF4854	0.17	+0.1
4,838,455	+		GFF4854	0.18	-1.8
4,838,463	+		GFF4854	0.18	+1.0
4,838,464	-		GFF4854	0.18	-2.0
4,838,471	-		GFF4854	0.18	-1.3
4,838,482	+		GFF4854	0.19	-0.3
4,838,482	+		GFF4854	0.19	-2.1
4,838,490	-		GFF4854	0.19	-0.2
4,838,490	-		GFF4854	0.19	+0.3
4,838,490	-		GFF4854	0.19	-0.1
4,838,490	-		GFF4854	0.19	-1.5
4,838,490	-		GFF4854	0.19	+0.7
4,838,490	-		GFF4854	0.19	+1.3
4,838,490	-		GFF4854	0.19	+0.9