Strain Fitness in Sphingobium sp. HT1-2 around GFF4620

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,613,904	+		GFF4619	0.14	-1.9
4,613,912	-		GFF4619	0.15	+0.7
4,613,926	-		GFF4619	0.16	-2.9
4,613,958	+		GFF4619	0.19	-2.1
4,613,958	+		GFF4619	0.19	+0.0
4,613,958	+		GFF4619	0.19	-1.2
4,613,958	+		GFF4619	0.19	-2.0
4,613,958	+		GFF4619	0.19	-2.2
4,613,958	+		GFF4619	0.19	-1.2
4,613,958	+		GFF4619	0.19	+0.1
4,613,966	-		GFF4619	0.20	+0.1
4,613,966	-		GFF4619	0.20	-1.2
4,613,966	-		GFF4619	0.20	-1.4
4,613,966	-		GFF4619	0.20	-1.3
4,613,966	-		GFF4619	0.20	-2.0
4,613,966	-		GFF4619	0.20	-0.7
4,613,966	-		GFF4619	0.20	+0.0
4,613,966	-		GFF4619	0.20	-0.5
4,613,966	-		GFF4619	0.20	-0.1
4,613,966	-		GFF4619	0.20	-1.1
4,613,966	-		GFF4619	0.20	-1.6
4,613,968	+		GFF4619	0.20	-0.2
4,613,968	+		GFF4619	0.20	-1.1
4,613,976	-		GFF4619	0.20	+0.6
4,614,009	+		GFF4619	0.23	-0.9
4,614,012	-		GFF4619	0.24	-1.1
4,614,036	-		GFF4619	0.26	-0.6
4,614,043	+		GFF4619	0.26	+0.3
4,614,060	+		GFF4619	0.28	-0.6
4,614,064	+		GFF4619	0.28	-1.1
4,614,072	-		GFF4619	0.29	-0.8
4,614,073	-		GFF4619	0.29	-1.6
4,614,092	+		GFF4619	0.30	-1.7
4,614,127	+		GFF4619	0.33	+0.6
4,614,146	-		GFF4619	0.35	+0.2
4,614,148	+		GFF4619	0.35	-0.4
4,614,158	-		GFF4619	0.36	+0.2
4,614,163	+		GFF4619	0.37	-1.7
4,614,163	+		GFF4619	0.37	+0.8
4,614,163	+		GFF4619	0.37	-0.6
4,614,170	-		GFF4619	0.37	-1.1
4,614,171	-		GFF4619	0.37	-0.5
4,614,171	-		GFF4619	0.37	+0.2
4,614,171	-		GFF4619	0.37	-1.7
4,614,206	-		GFF4619	0.40	-2.6
4,614,208	+		GFF4619	0.40	-0.9
4,614,208	+		GFF4619	0.40	-1.2
4,614,208	+		GFF4619	0.40	-0.5
4,614,208	+		GFF4619	0.40	+0.3
4,614,216	-		GFF4619	0.41	+0.7
4,614,216	-		GFF4619	0.41	-0.6
4,614,216	-		GFF4619	0.41	-0.4
4,614,216	-		GFF4619	0.41	-0.1
4,614,226	-		GFF4619	0.42	-1.0
4,614,267	+		GFF4619	0.45	-1.3
4,614,267	+		GFF4619	0.45	-2.1
4,614,272	+		GFF4619	0.46	-0.2
4,614,280	-		GFF4619	0.47	+0.7
4,614,294	-		GFF4619	0.48	-0.8
4,614,423	-		GFF4619	0.59	-0.5
4,614,425	+		GFF4619	0.59	+0.4
4,614,431	-		GFF4619	0.60	-1.9
4,614,433	+		GFF4619	0.60	+1.3
4,614,488	+		GFF4619	0.64	-1.1
4,614,497	-		GFF4619	0.65	+0.0
4,614,504	-		GFF4619	0.66	-1.2
4,614,519	+		GFF4619	0.67	-0.2
4,614,546	+		GFF4619	0.69	-0.9
4,614,572	+		GFF4619	0.72	+0.5
4,614,593	+		GFF4619	0.73	-0.6
4,614,597	-		GFF4619	0.74	-1.4
4,614,601	-		GFF4619	0.74	-1.9
4,614,601	-		GFF4619	0.74	-0.3
4,614,610	+		GFF4619	0.75	-0.9
4,614,617	-		GFF4619	0.76	+0.7
4,614,632	+		GFF4619	0.77	+0.0
4,614,648	+		GFF4619	0.78	-0.2
4,614,648	+		GFF4619	0.78	-1.4
4,614,648	+		GFF4619	0.78	-0.5
4,614,656	-		GFF4619	0.79	-0.4
4,614,656	-		GFF4619	0.79	-0.2
4,614,657	+		GFF4619	0.79	-0.2
4,614,657	+		GFF4619	0.79	-0.1
4,614,665	-		GFF4619	0.80	+0.0
4,614,666	-		GFF4619	0.80	+0.1
4,614,675	-		GFF4619	0.80	-1.0
4,614,675	-		GFF4619	0.80	-1.3
4,614,682	-		GFF4619	0.81	-1.1
4,614,689	+		GFF4619	0.82	-0.6
4,614,697	-		GFF4619	0.82	+0.4
4,614,697	-		GFF4619	0.82	+0.3
4,614,699	+		GFF4619	0.83	+0.1
4,614,699	+		GFF4619	0.83	-0.9
4,614,699	+		GFF4619	0.83	+0.5
4,614,699	+		GFF4619	0.83	-1.7
4,614,700	+		GFF4619	0.83	+0.5
4,614,700	+		GFF4619	0.83	+0.1
4,614,707	-		GFF4619	0.83	-3.0
4,614,707	-		GFF4619	0.83	-0.6
4,614,707	-		GFF4619	0.83	-1.7
4,614,714	+		GFF4619	0.84	-1.2
4,614,719	+		GFF4619	0.84	-1.4
4,614,719	+		GFF4619	0.84	-1.5
4,614,722	-		GFF4619	0.85	-0.7
4,614,722	-		GFF4619	0.85	+0.2
4,614,727	-		GFF4619	0.85	-1.1
4,614,729	+		GFF4619	0.85	+0.0
4,614,730	+		GFF4619	0.85	-0.6
4,614,737	+		GFF4619	0.86	-1.1
4,614,737	-		GFF4619	0.86	-1.7
4,614,737	-		GFF4619	0.86	+0.2
4,614,737	-		GFF4619	0.86	-1.5
4,614,738	-		GFF4619	0.86	-0.7
4,614,745	-		GFF4619	0.87	+0.3
4,614,756	+		GFF4619	0.87	-0.5
4,614,790	+				-2.3
4,614,796	-				-1.0
4,614,805	+				-1.7
4,614,813	-				-1.4
4,614,813	-				-1.1
4,614,815	-				+0.3
4,614,822	-				-1.9
4,614,832	+				+0.6
4,614,832	+				-2.2
4,614,834	-				-0.3
4,614,834	-				-0.5
4,614,834	-				-1.1
4,614,840	-				-1.1
4,614,840	-				-0.5
4,614,840	-				-0.9
4,614,840	-				-0.2
4,614,847	+				-1.9
4,614,847	-				+0.2
4,614,847	-				-2.0
4,614,847	-				-0.6
4,614,850	-				-0.9
4,614,894	-				-0.9
4,614,894	-				-1.3
4,614,894	-				-0.7
4,614,894	-				-0.2
4,614,894	-				-0.2
4,614,930	+				+0.2
4,614,952	+				+0.0
4,614,960	-				-0.2
4,614,960	-				-0.8
4,614,960	-				-0.2
4,614,965	-				-0.6
4,614,965	-				-1.2
4,614,966	+				+0.2
4,614,969	-				+0.6
4,614,969	-				-0.8
4,614,974	-				-0.9
4,614,980	+				-0.6
4,614,990	+				-1.2
4,614,998	-				+0.4
4,615,002	+		GFF4620	0.10	-0.1
4,615,002	+		GFF4620	0.10	-0.5
4,615,004	+		GFF4620	0.10	-1.1
4,615,009	+		GFF4620	0.11	-0.2
4,615,020	+		GFF4620	0.12	+0.9
4,615,023	-		GFF4620	0.12	+0.0
4,615,033	+		GFF4620	0.13	-1.8
4,615,034	+		GFF4620	0.13	+0.1
4,615,034	+		GFF4620	0.13	-0.4
4,615,038	+		GFF4620	0.14	-1.7
4,615,041	-		GFF4620	0.14	-0.2
4,615,042	-		GFF4620	0.14	+0.3
4,615,042	-		GFF4620	0.14	-1.0
4,615,051	+		GFF4620	0.15	-0.5
4,615,059	-		GFF4620	0.16	-0.5
4,615,088	-		GFF4620	0.19	-1.2
4,615,121	-		GFF4620	0.22	-0.7
4,615,123	+		GFF4620	0.22	-1.4
4,615,123	+		GFF4620	0.22	+1.7
4,615,128	+		GFF4620	0.23	-2.4
4,615,136	-		GFF4620	0.24	-1.6
4,615,148	+		GFF4620	0.25	-0.6
4,615,151	+		GFF4620	0.25	-0.6
4,615,151	+		GFF4620	0.25	+1.4
4,615,151	+		GFF4620	0.25	-2.1
4,615,151	+		GFF4620	0.25	-1.2
4,615,158	+		GFF4620	0.26	+0.8
4,615,159	-		GFF4620	0.26	+0.6
4,615,159	-		GFF4620	0.26	-0.6
4,615,159	-		GFF4620	0.26	-0.9
4,615,159	-		GFF4620	0.26	+0.5
4,615,164	-		GFF4620	0.26	+0.3
4,615,179	-		GFF4620	0.28	-0.6
4,615,183	+		GFF4620	0.28	+0.1
4,615,185	+		GFF4620	0.28	-0.1
4,615,191	-		GFF4620	0.29	+0.1
4,615,195	+		GFF4620	0.29	+1.0
4,615,202	-		GFF4620	0.30	-0.6
4,615,203	-		GFF4620	0.30	+0.0
4,615,250	+		GFF4620	0.35	+0.2
4,615,258	-		GFF4620	0.36	-1.2
4,615,291	-		GFF4620	0.39	-1.0
4,615,291	-		GFF4620	0.39	+0.8
4,615,316	+		GFF4620	0.42	-1.1
4,615,321	+		GFF4620	0.42	-1.2
4,615,343	+		GFF4620	0.44	+0.3
4,615,343	+		GFF4620	0.44	-1.0
4,615,362	+		GFF4620	0.46	-0.2
4,615,376	+		GFF4620	0.48	-1.3
4,615,380	+		GFF4620	0.48	-2.0
4,615,384	-		GFF4620	0.48	+1.5
4,615,407	+		GFF4620	0.51	-0.3
4,615,415	-		GFF4620	0.51	+0.2
4,615,415	-		GFF4620	0.51	-0.1
4,615,422	-		GFF4620	0.52	-1.0
4,615,456	-		GFF4620	0.56	-0.4
4,615,460	+		GFF4620	0.56	-1.2
4,615,466	+		GFF4620	0.57	-0.2
4,615,466	-		GFF4620	0.57	-0.3
4,615,476	-		GFF4620	0.58	-1.4
4,615,478	-		GFF4620	0.58	+0.1
4,615,478	-		GFF4620	0.58	+0.3
4,615,525	+		GFF4620	0.62	-0.3
4,615,525	-		GFF4620	0.62	-0.1
4,615,541	+		GFF4620	0.64	+1.2
4,615,541	+		GFF4620	0.64	-1.5
4,615,551	+		GFF4620	0.65	+0.1
4,615,557	+		GFF4620	0.66	-1.2
4,615,562	+		GFF4620	0.66	-1.0
4,615,562	+		GFF4620	0.66	-0.2
4,615,582	+		GFF4620	0.68	-2.0
4,615,585	-		GFF4620	0.68	-2.1
4,615,610	+		GFF4620	0.71	-0.5
4,615,621	+		GFF4620	0.72	-1.1
4,615,621	+		GFF4620	0.72	+0.3
4,615,621	+		GFF4620	0.72	-1.6
4,615,621	+		GFF4620	0.72	-0.9
4,615,621	+		GFF4620	0.72	-0.6
4,615,621	+		GFF4620	0.72	-1.6
4,615,629	-		GFF4620	0.73	-1.7
4,615,629	-		GFF4620	0.73	+1.0
4,615,629	-		GFF4620	0.73	-1.2
4,615,629	-		GFF4620	0.73	-1.0
4,615,629	-		GFF4620	0.73	-0.6
4,615,634	-		GFF4620	0.73	-0.6
4,615,646	-		GFF4620	0.75	-0.9
4,615,670	+		GFF4620	0.77	-0.2
4,615,677	-		GFF4620	0.78	-0.1
4,615,707	-		GFF4620	0.81	-0.6
4,615,713	+		GFF4620	0.81	-1.2
4,615,721	-		GFF4620	0.82	-2.6
4,615,721	-		GFF4620	0.82	-1.7
4,615,740	+		GFF4620	0.84	-0.6
4,615,746	-		GFF4620	0.85	-0.1
4,615,746	-		GFF4620	0.85	+0.1
4,615,750	+		GFF4620	0.85	-0.7
4,615,750	+		GFF4620	0.85	-0.3
4,615,750	+		GFF4620	0.85	+0.4
4,615,750	+		GFF4620	0.85	-0.7
4,615,750	+		GFF4620	0.85	-0.6
4,615,755	+		GFF4620	0.85	-1.9
4,615,755	+		GFF4620	0.85	-1.7
4,615,755	+		GFF4620	0.85	-0.9
4,615,755	+		GFF4620	0.85	+0.3
4,615,755	+		GFF4620	0.85	+1.0
4,615,755	+		GFF4620	0.85	-1.2
4,615,755	+		GFF4620	0.85	-0.6
4,615,755	+		GFF4620	0.85	-0.8
4,615,755	+		GFF4620	0.85	+0.0
4,615,758	-		GFF4620	0.86	+0.0
4,615,758	-		GFF4620	0.86	+0.6
4,615,758	-		GFF4620	0.86	+0.0
4,615,758	-		GFF4620	0.86	-1.1
4,615,763	-		GFF4620	0.86	+0.1
4,615,763	-		GFF4620	0.86	-0.9
4,615,763	-		GFF4620	0.86	-0.6
4,615,763	-		GFF4620	0.86	-0.2
4,615,763	-		GFF4620	0.86	+0.4
4,615,763	-		GFF4620	0.86	-0.3
4,615,763	-		GFF4620	0.86	+0.9
4,615,763	-		GFF4620	0.86	-0.3
4,615,763	-		GFF4620	0.86	-0.9
4,615,763	-		GFF4620	0.86	-0.3
4,615,777	+		GFF4620	0.88	-0.2
4,615,782	+		GFF4620	0.88	-0.6
4,615,782	+		GFF4620	0.88	-0.6
4,615,791	+		GFF4620	0.89	-0.5
4,615,791	-		GFF4620	0.89	-1.0
4,615,792	+		GFF4620	0.89	-0.6
4,615,792	+		GFF4620	0.89	-0.0
4,615,792	+		GFF4620	0.89	-1.2
4,615,792	+		GFF4620	0.89	-1.4
4,615,799	-		GFF4620	0.90	-0.6
4,615,802	+				+1.4
4,615,802	+				-0.2
4,615,802	+				-0.5
4,615,802	+				-1.3
4,615,802	+				-1.9
4,615,802	+				-1.6
4,615,802	+				-1.6
4,615,810	+				-0.8
4,615,810	-				-1.5
4,615,810	-				-0.6
4,615,810	-				+0.4
4,615,810	-				+1.3
4,615,810	-				+0.7
4,615,854	-				-0.7
4,615,862	-				+0.3
4,615,866	+				-1.3
4,615,906	+				-0.5
4,615,938	-				+0.4
4,615,938	-				-1.6
4,615,940	+				-1.6
4,615,992	+		GFF4621	0.17	-0.9
4,615,995	-		GFF4621	0.18	-0.7
4,615,997	+		GFF4621	0.19	+0.0
4,615,997	+		GFF4621	0.19	-0.9
4,615,997	+		GFF4621	0.19	-0.3
4,615,997	+		GFF4621	0.19	+0.3
4,615,997	+		GFF4621	0.19	-0.4
4,616,002	+		GFF4621	0.20	+0.8
4,616,002	+		GFF4621	0.20	-1.4
4,616,002	+		GFF4621	0.20	-0.8
4,616,002	+		GFF4621	0.20	-1.1
4,616,002	+		GFF4621	0.20	-1.5
4,616,005	-		GFF4621	0.21	-0.1
4,616,005	-		GFF4621	0.21	-0.1
4,616,005	-		GFF4621	0.21	-0.4
4,616,007	+		GFF4621	0.21	-0.3
4,616,007	+		GFF4621	0.21	-2.4
4,616,007	+		GFF4621	0.21	-0.3
4,616,007	+		GFF4621	0.21	-1.5
4,616,007	+		GFF4621	0.21	-0.6
4,616,007	+		GFF4621	0.21	-0.7
4,616,007	+		GFF4621	0.21	-1.4
4,616,007	+		GFF4621	0.21	-1.1
4,616,007	+		GFF4621	0.21	+0.1
4,616,007	+		GFF4621	0.21	-0.7
4,616,010	-		GFF4621	0.22	-0.3
4,616,010	-		GFF4621	0.22	-0.6
4,616,010	-		GFF4621	0.22	+0.0
4,616,012	+		GFF4621	0.23	-0.1
4,616,015	-		GFF4621	0.24	-0.6
4,616,015	-		GFF4621	0.24	-0.1
4,616,015	-		GFF4621	0.24	+0.1
4,616,015	-		GFF4621	0.24	-0.8
4,616,015	-		GFF4621	0.24	+0.4
4,616,015	-		GFF4621	0.24	+0.1
4,616,015	-		GFF4621	0.24	+0.1
4,616,020	-		GFF4621	0.25	-2.3
4,616,020	-		GFF4621	0.25	-1.1
4,616,025	-		GFF4621	0.27	-0.6
4,616,041	-		GFF4621	0.31	-1.2
4,616,050	-		GFF4621	0.34	-0.3
4,616,052	+		GFF4621	0.34	-0.4
4,616,052	+		GFF4621	0.34	+0.6
4,616,098	+		GFF4621	0.48	-0.7
4,616,106	+		GFF4621	0.50	-1.1
4,616,171	-		GFF4621	0.69	-0.2
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4,616,190	+		GFF4621	0.74	-0.7
4,616,197	+		GFF4621	0.77	-0.7
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4,616,225	-		GFF4621	0.85	+0.4
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4,616,249	-				-0.6
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4,616,284	+				+1.4
4,616,292	-				-1.4
4,616,312	+				-0.7
4,616,320	-				-1.1
4,616,328	+				+1.3
4,616,336	-				-1.9
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4,616,347	-				+0.4
4,616,361	+				+1.1
4,616,366	+				-0.5
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4,616,366	+				-2.3
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4,616,366	+				+0.6
4,616,371	+				-0.6
4,616,371	+				-0.0
4,616,371	+				-1.7
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4,616,371	+				+0.4
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4,616,371	+				+0.3
4,616,371	+				-0.2
4,616,371	+				-0.7
4,616,374	-				-1.1
4,616,374	-				+0.0
4,616,374	-				-1.7
4,616,374	-				-1.2
4,616,379	-				-0.9
4,616,379	-				-1.4
4,616,379	-				+0.3
4,616,379	-				-0.8
4,616,379	-				-0.6
4,616,379	-				-0.6
4,616,386	+				-0.7
4,616,386	+				+0.6
4,616,391	+				-0.4
4,616,391	+				-0.7
4,616,391	+				+0.1
4,616,391	+				-0.2
4,616,394	-				-1.2
4,616,394	-				-1.7
4,616,396	+				+0.7
4,616,396	+				+0.4
4,616,396	+				+1.0
4,616,396	+				+0.5
4,616,399	-				+0.2
4,616,399	-				-0.9
4,616,404	-				-0.6
4,616,404	-				-0.0
4,616,411	+				-2.0
4,616,454	+				-0.2
4,616,469	+				-2.3
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4,616,477	-				-1.2
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4,616,531	+				-1.5
4,616,552	+				+1.4
4,616,583	+				+1.7
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4,616,585	+				-1.2
4,616,585	+				-2.0
4,616,585	+				-1.5
4,616,586	+				-1.1
4,616,586	+				-2.3
4,616,591	-				-1.5
4,616,591	-				-0.5
4,616,593	-				-1.5
4,616,593	-				-1.0
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4,616,593	-				-1.1
4,616,607	+				-1.2
4,616,607	+				-0.5
4,616,610	-				-0.6
4,616,610	-				-2.0
4,616,612	+				+0.3
4,616,615	-				-1.0
4,616,617	+				-1.2
4,616,618	+				-0.2
4,616,618	+				-1.2
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4,616,618	+				+0.2
4,616,618	+				-0.5
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4,616,618	+				+0.7
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4,616,618	+				+0.4
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4,616,618	+				-0.9
4,616,620	-				-1.5
4,616,625	-				+1.3
4,616,626	-				+0.3
4,616,626	-				-0.4
4,616,626	-				-0.8
4,616,626	-				-1.6
4,616,626	-				-2.2
4,616,626	-				-1.1
4,616,626	-				-0.7
4,616,626	-				-1.2
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4,616,626	-				+0.4
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4,616,626	-				-0.8
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4,616,635	+				+0.4
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4,616,648	-				-0.9
4,616,688	-				-0.9
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4,616,715	-				-0.6
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4,616,718	+				-0.6
4,616,729	+				-0.6
4,616,731	-				+1.4
4,616,756	-				-0.2
4,616,764	-				-0.9
4,616,768	+				-0.3
4,616,776	-				-0.7
4,616,778	+				+0.3
4,616,792	-		GFF4622	0.11	-1.1
4,616,795	+		GFF4622	0.11	+0.0
4,616,803	+		GFF4622	0.11	-1.3
4,616,803	-		GFF4622	0.11	-0.8
4,616,824	+		GFF4622	0.13	+1.4
4,616,824	+		GFF4622	0.13	-0.5
4,616,832	-		GFF4622	0.13	-0.7
4,616,855	+		GFF4622	0.15	-0.9
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4,616,857	-		GFF4622	0.15	+1.2
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4,616,863	-		GFF4622	0.15	-1.5
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4,616,863	-		GFF4622	0.15	+0.0
4,616,887	+		GFF4622	0.17	+0.1
4,616,889	-		GFF4622	0.17	-1.2
4,616,895	-		GFF4622	0.17	-0.3