Strain Fitness in Sphingobium sp. HT1-2 around GFF4606

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,599,866	+		GFF4605	0.45	-0.6
4,599,874	-		GFF4605	0.45	-0.6
4,599,879	-		GFF4605	0.45	-1.2
4,599,883	+		GFF4605	0.46	+0.2
4,599,891	-		GFF4605	0.46	+0.8
4,599,893	+		GFF4605	0.46	+0.1
4,599,898	+		GFF4605	0.46	+0.3
4,599,898	+		GFF4605	0.46	-2.5
4,599,898	+		GFF4605	0.46	-0.7
4,599,909	+		GFF4605	0.47	-2.4
4,599,961	+		GFF4605	0.50	-2.2
4,599,961	+		GFF4605	0.50	-0.2
4,599,961	+		GFF4605	0.50	-0.2
4,599,961	+		GFF4605	0.50	+0.8
4,599,969	-		GFF4605	0.50	-0.2
4,599,971	+		GFF4605	0.51	+0.7
4,599,973	+		GFF4605	0.51	+0.6
4,599,974	-		GFF4605	0.51	+0.2
4,599,979	-		GFF4605	0.51	+0.1
4,599,979	-		GFF4605	0.51	-0.8
4,599,981	-		GFF4605	0.51	-1.1
4,599,986	-		GFF4605	0.51	+0.0
4,600,029	+		GFF4605	0.54	-0.9
4,600,033	-		GFF4605	0.54	-0.6
4,600,037	-		GFF4605	0.54	-0.6
4,600,063	+		GFF4605	0.56	+0.7
4,600,081	-		GFF4605	0.57	-2.7
4,600,090	+		GFF4605	0.57	-0.0
4,600,098	-		GFF4605	0.58	-0.1
4,600,098	-		GFF4605	0.58	-0.9
4,600,107	+		GFF4605	0.58	+0.3
4,600,152	+		GFF4605	0.61	+1.8
4,600,152	+		GFF4605	0.61	+0.0
4,600,153	+		GFF4605	0.61	+0.1
4,600,160	+		GFF4605	0.61	-1.2
4,600,168	-		GFF4605	0.62	-1.0
4,600,179	-		GFF4605	0.62	+0.3
4,600,216	+		GFF4605	0.64	-0.1
4,600,216	+		GFF4605	0.64	-1.6
4,600,216	+		GFF4605	0.64	-0.7
4,600,216	+		GFF4605	0.64	-0.1
4,600,216	+		GFF4605	0.64	-2.2
4,600,216	+		GFF4605	0.64	-2.8
4,600,224	-		GFF4605	0.65	-0.2
4,600,224	-		GFF4605	0.65	+0.3
4,600,224	-		GFF4605	0.65	-0.5
4,600,253	+		GFF4605	0.66	-0.7
4,600,253	+		GFF4605	0.66	+0.7
4,600,282	+		GFF4605	0.68	-1.2
4,600,286	+		GFF4605	0.68	-1.5
4,600,294	-		GFF4605	0.69	-1.4
4,600,294	-		GFF4605	0.69	-1.5
4,600,294	-		GFF4605	0.69	+0.0
4,600,294	-		GFF4605	0.69	-1.3
4,600,294	-		GFF4605	0.69	-1.3
4,600,295	+		GFF4605	0.69	+0.6
4,600,295	-		GFF4605	0.69	+0.0
4,600,295	-		GFF4605	0.69	-1.1
4,600,304	-		GFF4605	0.69	+0.1
4,600,319	+		GFF4605	0.70	+0.7
4,600,319	+		GFF4605	0.70	-0.6
4,600,324	+		GFF4605	0.70	-1.1
4,600,332	-		GFF4605	0.71	-0.7
4,600,332	-		GFF4605	0.71	-1.2
4,600,332	-		GFF4605	0.71	+0.3
4,600,334	+		GFF4605	0.71	-1.5
4,600,334	+		GFF4605	0.71	-1.5
4,600,342	-		GFF4605	0.71	-0.3
4,600,342	-		GFF4605	0.71	-1.0
4,600,347	+		GFF4605	0.72	-1.1
4,600,371	+		GFF4605	0.73	-0.8
4,600,371	+		GFF4605	0.73	-0.4
4,600,387	+		GFF4605	0.74	-0.8
4,600,391	+		GFF4605	0.74	-0.9
4,600,391	+		GFF4605	0.74	-1.7
4,600,399	-		GFF4605	0.75	+0.5
4,600,399	-		GFF4605	0.75	-1.1
4,600,400	+		GFF4605	0.75	-1.0
4,600,468	-		GFF4605	0.78	-0.9
4,600,482	+		GFF4605	0.79	-1.4
4,600,484	+		GFF4605	0.79	-0.3
4,600,492	-		GFF4605	0.80	+0.1
4,600,492	-		GFF4605	0.80	-0.6
4,600,513	-		GFF4605	0.81	-1.2
4,600,550	+		GFF4605	0.83	-0.1
4,600,558	-		GFF4605	0.83	+0.6
4,600,558	-		GFF4605	0.83	-0.4
4,600,564	+		GFF4605	0.84	-1.2
4,600,564	+		GFF4605	0.84	-1.1
4,600,577	-		GFF4605	0.84	-1.3
4,600,580	+		GFF4605	0.85	+0.7
4,600,588	-		GFF4605	0.85	-0.4
4,600,608	+		GFF4605	0.86	-0.1
4,600,610	+		GFF4605	0.86	-1.2
4,600,630	+		GFF4605	0.87	-2.2
4,600,638	-		GFF4605	0.88	-0.2
4,600,684	-				-0.9
4,600,697	-				-1.4
4,600,704	-				-0.7
4,600,708	-				-0.6
4,600,734	+				-0.9
4,600,740	-				+0.1
4,600,744	+				-1.7
4,600,746	+				+0.0
4,600,746	+				-0.1
4,600,754	-				-0.6
4,600,759	+				+0.3
4,600,759	+				-1.2
4,600,759	+				-2.0
4,600,759	+				+0.8
4,600,759	+				+0.3
4,600,759	+				+1.2
4,600,759	+				-1.9
4,600,767	-				-0.3
4,600,767	-				-0.2
4,600,767	-				+0.4
4,600,767	-				-1.2
4,600,767	-				-1.3
4,600,769	+				-0.2
4,600,777	-				-0.6
4,600,792	+				+1.3
4,600,800	-				-1.1
4,600,800	-				-0.6
4,600,808	-				-1.0
4,600,813	-				+0.3
4,600,831	+				+1.3
4,600,839	-				-1.5
4,600,841	+				-0.9
4,600,851	+				-1.6
4,600,856	+				-1.6
4,600,859	-				-0.7
4,600,861	+				+0.8
4,600,872	+				+0.8
4,600,883	+				-1.2
4,600,886	-				-1.2
4,600,888	+				-1.0
4,600,889	+				+0.0
4,600,930	-				-0.4
4,600,932	+				-1.0
4,600,932	+				-1.4
4,600,932	+				-1.1
4,600,932	+				+0.3
4,600,932	+				-1.4
4,600,935	-				+0.3
4,600,937	+				-1.0
4,600,937	+				+0.5
4,600,940	-				-0.5
4,600,940	-				-0.6
4,600,940	-				-0.1
4,600,940	-				-1.2
4,600,940	-				-0.7
4,600,940	-				-0.5
4,600,940	-				-0.9
4,600,940	-				-1.2
4,600,971	-				-0.7
4,600,972	-				-1.1
4,600,972	-				+0.1
4,600,973	+				-0.4
4,600,973	+				-1.3
4,600,975	+				+0.1
4,600,981	-				-1.9
4,600,981	-				-1.6
4,600,981	-				-0.2
4,600,981	-				-1.3
4,600,983	+				-1.1
4,600,991	-		GFF4606	0.10	+0.0
4,601,000	+		GFF4606	0.11	-0.6
4,601,000	+		GFF4606	0.11	-0.4
4,601,008	-		GFF4606	0.11	-1.7
4,601,008	-		GFF4606	0.11	-1.5
4,601,009	-		GFF4606	0.12	-1.2
4,601,018	+		GFF4606	0.12	-0.4
4,601,018	+		GFF4606	0.12	+0.3
4,601,018	+		GFF4606	0.12	-1.4
4,601,019	+		GFF4606	0.12	+0.3
4,601,027	-		GFF4606	0.13	-0.4
4,601,027	-		GFF4606	0.13	-2.9
4,601,027	-		GFF4606	0.13	-1.3
4,601,027	-		GFF4606	0.13	+1.4
4,601,031	+		GFF4606	0.13	+0.4
4,601,031	+		GFF4606	0.13	-1.2
4,601,034	-		GFF4606	0.13	-1.2
4,601,058	+		GFF4606	0.15	-0.1
4,601,060	+		GFF4606	0.15	-1.0
4,601,073	-		GFF4606	0.16	-0.3
4,601,074	-		GFF4606	0.16	-1.7
4,601,122	-		GFF4606	0.20	+0.0
4,601,130	+		GFF4606	0.20	-1.8
4,601,130	+		GFF4606	0.20	+1.0
4,601,130	+		GFF4606	0.20	-0.7
4,601,130	+		GFF4606	0.20	-0.7
4,601,130	+		GFF4606	0.20	+1.1
4,601,138	-		GFF4606	0.21	-1.1
4,601,138	-		GFF4606	0.21	+0.3
4,601,138	-		GFF4606	0.21	+1.0
4,601,149	+		GFF4606	0.22	+0.4
4,601,155	+		GFF4606	0.22	-1.3
4,601,155	+		GFF4606	0.22	-2.1
4,601,155	+		GFF4606	0.22	-1.0
4,601,155	+		GFF4606	0.22	-0.6
4,601,155	+		GFF4606	0.22	+0.8
4,601,155	+		GFF4606	0.22	-2.0
4,601,155	+		GFF4606	0.22	-0.2
4,601,155	+		GFF4606	0.22	+0.2
4,601,163	-		GFF4606	0.23	-1.4
4,601,163	-		GFF4606	0.23	-1.4
4,601,163	-		GFF4606	0.23	-1.0
4,601,168	+		GFF4606	0.23	+0.0
4,601,211	-		GFF4606	0.26	-1.6
4,601,216	-		GFF4606	0.27	-1.3
4,601,220	+		GFF4606	0.27	-1.6
4,601,220	+		GFF4606	0.27	-1.3
4,601,265	+		GFF4606	0.30	-0.4
4,601,322	+		GFF4606	0.34	-0.2
4,601,382	+		GFF4606	0.39	-0.6
4,601,387	+		GFF4606	0.39	-1.3
4,601,390	-		GFF4606	0.39	+0.3
4,601,395	-		GFF4606	0.40	-1.0
4,601,395	-		GFF4606	0.40	-0.9
4,601,395	-		GFF4606	0.40	-0.5
4,601,395	-		GFF4606	0.40	-0.2
4,601,411	+		GFF4606	0.41	-1.7
4,601,411	+		GFF4606	0.41	-0.8
4,601,416	+		GFF4606	0.41	-1.0
4,601,416	+		GFF4606	0.41	-1.1
4,601,416	+		GFF4606	0.41	-0.2
4,601,416	+		GFF4606	0.41	-1.2
4,601,419	-		GFF4606	0.41	-1.1
4,601,419	-		GFF4606	0.41	+0.6
4,601,422	+		GFF4606	0.42	-0.7
4,601,424	-		GFF4606	0.42	+0.3
4,601,424	-		GFF4606	0.42	-1.5
4,601,424	-		GFF4606	0.42	-0.5
4,601,432	+		GFF4606	0.42	+0.3
4,601,432	+		GFF4606	0.42	+1.1
4,601,467	-		GFF4606	0.45	-3.5
4,601,471	+		GFF4606	0.45	-0.5
4,601,471	+		GFF4606	0.45	-0.8
4,601,479	-		GFF4606	0.46	-0.2
4,601,479	-		GFF4606	0.46	-0.2
4,601,479	-		GFF4606	0.46	+0.8
4,601,479	-		GFF4606	0.46	-0.2
4,601,479	-		GFF4606	0.46	-0.1
4,601,479	-		GFF4606	0.46	-1.2
4,601,480	+		GFF4606	0.46	-0.5
4,601,490	+		GFF4606	0.46	+0.3
4,601,503	+		GFF4606	0.47	-1.1
4,601,503	+		GFF4606	0.47	-1.0
4,601,503	+		GFF4606	0.47	-0.8
4,601,503	+		GFF4606	0.47	-1.6
4,601,511	-		GFF4606	0.48	+0.4
4,601,511	-		GFF4606	0.48	-0.7
4,601,511	-		GFF4606	0.48	+1.0
4,601,511	-		GFF4606	0.48	-1.0
4,601,511	-		GFF4606	0.48	-1.0
4,601,512	+		GFF4606	0.48	-1.6
4,601,530	-		GFF4606	0.49	-1.8
4,601,535	-		GFF4606	0.50	+0.6
4,601,535	-		GFF4606	0.50	-0.8
4,601,572	+		GFF4606	0.52	+0.4
4,601,572	+		GFF4606	0.52	-2.4
4,601,572	-		GFF4606	0.52	+0.6
4,601,575	+		GFF4606	0.53	+0.4
4,601,575	+		GFF4606	0.53	+0.6
4,601,583	-		GFF4606	0.53	-0.7
4,601,593	+		GFF4606	0.54	-2.0
4,601,603	-		GFF4606	0.55	-0.6
4,601,603	-		GFF4606	0.55	-1.7
4,601,698	-		GFF4606	0.62	-0.6
4,601,698	-		GFF4606	0.62	-2.2
4,601,704	+		GFF4606	0.62	-0.4
4,601,739	+		GFF4606	0.65	-1.3
4,601,739	+		GFF4606	0.65	+0.2
4,601,746	+		GFF4606	0.65	-1.4
4,601,747	-		GFF4606	0.65	+0.9
4,601,747	-		GFF4606	0.65	-0.5
4,601,747	-		GFF4606	0.65	+0.4
4,601,747	-		GFF4606	0.65	-0.5
4,601,747	-		GFF4606	0.65	+0.4
4,601,794	-		GFF4606	0.69	-0.9
4,601,807	+		GFF4606	0.69	-0.7
4,601,817	-		GFF4606	0.70	+1.4
4,601,834	-		GFF4606	0.71	-1.4
4,601,842	-		GFF4606	0.72	-1.4
4,601,850	-		GFF4606	0.73	-1.6
4,601,864	-		GFF4606	0.74	-1.0
4,601,864	-		GFF4606	0.74	-1.4
4,601,866	-		GFF4606	0.74	-1.3
4,601,887	-		GFF4606	0.75	-1.2
4,601,922	-		GFF4606	0.78	-1.6
4,601,940	+		GFF4606	0.79	+0.1
4,601,940	+		GFF4606	0.79	+0.8
4,601,940	+		GFF4606	0.79	-0.7
4,601,948	-		GFF4606	0.80	-1.6
4,601,959	+		GFF4606	0.81	-1.3
4,601,959	+		GFF4606	0.81	-1.7
4,601,991	-		GFF4606	0.83	+0.4
4,601,991	-		GFF4606	0.83	-2.2
4,602,031	-		GFF4606	0.86	-0.5
4,602,032	-		GFF4606	0.86	-0.1
4,602,062	+		GFF4606	0.88	+0.2
4,602,089	-				+0.0
4,602,089	-				-1.3
4,602,101	+				-0.1
4,602,114	+				-1.3
4,602,115	-				-1.0
4,602,140	+				-1.3
4,602,141	+				-0.4
4,602,141	+				-1.2
4,602,147	-				+1.3
4,602,149	-				+0.7
4,602,157	+				-1.0
4,602,157	+				+0.6
4,602,165	-				-0.8
4,602,176	+				-0.6
4,602,179	-				-1.7
4,602,184	-				+1.4
4,602,185	-				-2.2
4,602,191	-				-1.0
4,602,232	+				-1.0
4,602,241	-				+0.8
4,602,242	+				-1.7
4,602,252	+				-1.6
4,602,266	+				-1.0
4,602,267	-				+0.7
4,602,267	-				-2.0
4,602,274	-				+0.8
4,602,274	-				-0.6
4,602,289	-				-1.1
4,602,326	+				-0.6
4,602,336	+				-1.4
4,602,352	-				-1.1
4,602,366	-				+0.3
4,602,390	+				-1.3
4,602,392	+				-0.1
4,602,392	+				+1.0
4,602,392	+				+1.5
4,602,392	+				-1.7
4,602,392	+				-1.9
4,602,398	-				+0.1
4,602,400	+				+0.2
4,602,400	+				-1.2
4,602,400	-				-1.7
4,602,400	-				+0.5
4,602,400	-				-0.7
4,602,405	+				-0.4
4,602,419	+				-0.3
4,602,434	+				-1.2
4,602,434	+				-1.1
4,602,439	+				-0.6
4,602,442	-				-1.1
4,602,442	-				-0.6
4,602,442	-				-1.1
4,602,442	-				-1.8
4,602,447	-				-0.3
4,602,447	-				-1.0
4,602,474	+				-1.2
4,602,474	+				-1.0
4,602,474	+				-0.8
4,602,482	+				-0.6
4,602,482	+				+0.3
4,602,482	-				+1.0
4,602,482	-				-0.0
4,602,482	-				-1.6
4,602,489	+				-0.5
4,602,490	-				-0.3
4,602,503	+				-1.7
4,602,511	-				-0.5
4,602,511	-				-1.0
4,602,511	-				-0.8
4,602,516	-				+0.4
4,602,549	+				-2.1
4,602,592	+		GFF4607	0.11	+0.7
4,602,601	-		GFF4607	0.11	-1.2
4,602,608	-		GFF4607	0.12	-1.5
4,602,610	+		GFF4607	0.12	+0.6
4,602,615	+		GFF4607	0.12	-0.8
4,602,620	+		GFF4607	0.12	-0.6
4,602,627	-		GFF4607	0.13	+0.3
4,602,628	-		GFF4607	0.13	-1.8
4,602,638	+		GFF4607	0.13	+1.3
4,602,638	-		GFF4607	0.13	-1.2
4,602,638	-		GFF4607	0.13	-0.1
4,602,639	-		GFF4607	0.13	-0.9
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