Strain Fitness in Sphingobium sp. HT1-2 around GFF4489

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,480,301	+				-0.5
4,480,309	-				-0.5
4,480,309	-				+0.2
4,480,309	-				-1.0
4,480,314	-				-1.7
4,480,314	-				-1.5
4,480,314	-				+0.0
4,480,325	+				+0.3
4,480,325	+				-0.2
4,480,333	-				-0.2
4,480,362	-				+0.9
4,480,365	+				-2.1
4,480,382	+				-0.3
4,480,382	+				+1.1
4,480,382	+				-0.7
4,480,382	+				-1.3
4,480,382	+				+0.0
4,480,382	+				+0.1
4,480,382	+				+0.1
4,480,382	+				-0.5
4,480,390	-				-0.7
4,480,390	-				-1.2
4,480,390	-				-0.1
4,480,395	+				+1.0
4,480,402	+				-1.0
4,480,403	-				-0.7
4,480,410	-				+0.0
4,480,410	-				-0.9
4,480,414	-				+1.3
4,480,416	+				-0.2
4,480,416	+				-0.1
4,480,424	-				-0.2
4,480,424	-				-0.6
4,480,424	-				-0.5
4,480,429	-				+0.3
4,480,429	-				+0.1
4,480,429	-				+0.3
4,480,429	-				+0.4
4,480,472	-				-0.9
4,480,487	-				-1.2
4,480,505	+				-0.7
4,480,507	-				+0.5
4,480,520	+		GFF4488	0.11	+2.4
4,480,520	+		GFF4488	0.11	-0.7
4,480,528	-		GFF4488	0.12	+0.8
4,480,528	-		GFF4488	0.12	-1.9
4,480,528	-		GFF4488	0.12	-0.2
4,480,528	-		GFF4488	0.12	+0.5
4,480,528	-		GFF4488	0.12	-1.9
4,480,528	-		GFF4488	0.12	-0.3
4,480,548	-		GFF4488	0.16	-1.4
4,480,561	-		GFF4488	0.18	-0.6
4,480,572	-		GFF4488	0.20	-1.4
4,480,584	+		GFF4488	0.22	-0.6
4,480,584	+		GFF4488	0.22	-1.2
4,480,584	+		GFF4488	0.22	-0.5
4,480,587	-		GFF4488	0.22	-1.6
4,480,592	-		GFF4488	0.23	+1.3
4,480,602	+		GFF4488	0.25	+1.5
4,480,610	-		GFF4488	0.26	+0.3
4,480,616	-		GFF4488	0.27	+1.0
4,480,634	+		GFF4488	0.30	-0.6
4,480,636	+		GFF4488	0.30	-1.2
4,480,636	+		GFF4488	0.30	-0.4
4,480,636	+		GFF4488	0.30	+0.4
4,480,641	+		GFF4488	0.31	+1.5
4,480,642	+		GFF4488	0.31	+1.5
4,480,642	-		GFF4488	0.31	-2.0
4,480,644	-		GFF4488	0.32	-0.9
4,480,644	-		GFF4488	0.32	+0.3
4,480,644	-		GFF4488	0.32	+0.8
4,480,644	-		GFF4488	0.32	-0.0
4,480,699	+		GFF4488	0.41	-0.7
4,480,699	+		GFF4488	0.41	-1.1
4,480,712	+		GFF4488	0.43	-0.9
4,480,714	+		GFF4488	0.44	-0.2
4,480,720	-		GFF4488	0.45	-1.0
4,480,728	-		GFF4488	0.46	-0.1
4,480,750	-		GFF4488	0.50	+0.3
4,480,755	-		GFF4488	0.50	-0.6
4,480,775	+		GFF4488	0.54	-0.9
4,480,777	+		GFF4488	0.54	+1.4
4,480,777	+		GFF4488	0.54	+1.0
4,480,778	-		GFF4488	0.54	-1.0
4,480,780	-		GFF4488	0.55	-2.0
4,480,782	+		GFF4488	0.55	-0.7
4,480,782	+		GFF4488	0.55	+0.7
4,480,782	+		GFF4488	0.55	+0.3
4,480,782	+		GFF4488	0.55	-0.2
4,480,782	+		GFF4488	0.55	+1.4
4,480,782	+		GFF4488	0.55	+0.3
4,480,784	+		GFF4488	0.55	-1.0
4,480,785	-		GFF4488	0.55	-0.2
4,480,790	-		GFF4488	0.56	-1.3
4,480,790	-		GFF4488	0.56	-1.0
4,480,797	+		GFF4488	0.57	-1.1
4,480,797	-		GFF4488	0.57	+0.6
4,480,797	-		GFF4488	0.57	+0.8
4,480,802	-		GFF4488	0.58	-0.6
4,480,818	+		GFF4488	0.61	-1.1
4,480,818	+		GFF4488	0.61	-0.9
4,480,819	+		GFF4488	0.61	+0.3
4,480,826	-		GFF4488	0.62	-0.5
4,480,837	-		GFF4488	0.64	+1.0
4,480,851	-		GFF4488	0.66	+1.0
4,480,902	+		GFF4488	0.75	+0.6
4,480,910	-		GFF4488	0.76	+0.1
4,480,910	-		GFF4488	0.76	+0.9
4,480,938	-		GFF4488	0.81	+0.4
4,480,976	+		GFF4488	0.87	-0.1
4,480,979	-		GFF4488	0.88	+0.8
4,480,979	-		GFF4488	0.88	-1.7
4,480,979	-		GFF4488	0.88	-0.6
4,480,984	-		GFF4488	0.89	-0.5
4,480,984	-		GFF4488	0.89	+0.4
4,480,994	+				-1.4
4,481,007	+				-0.2
4,481,007	+				+0.4
4,481,007	+				+0.4
4,481,035	+				-1.2
4,481,047	+				+0.0
4,481,075	+				-0.1
4,481,075	+				-0.2
4,481,075	+				+0.8
4,481,083	-				+0.7
4,481,083	-				+1.4
4,481,083	-				+0.3
4,481,092	+				-0.2
4,481,092	+				-0.7
4,481,100	-				+0.9
4,481,119	-				-2.5
4,481,133	+				-1.0
4,481,177	+				+1.0
4,481,206	+				-2.1
4,481,209	-				-1.1
4,481,212	+				-0.6
4,481,214	-				+1.7
4,481,220	-				-1.4
4,481,227	-				-0.7
4,481,243	+				-0.2
4,481,316	+		GFF4489	0.11	+0.9
4,481,316	+		GFF4489	0.11	-0.2
4,481,319	-		GFF4489	0.12	-0.7
4,481,334	+		GFF4489	0.16	-0.9
4,481,334	+		GFF4489	0.16	+0.4
4,481,339	+		GFF4489	0.17	+0.6
4,481,342	-		GFF4489	0.18	-0.3
4,481,344	+		GFF4489	0.18	-1.2
4,481,345	+		GFF4489	0.19	+0.9
4,481,345	+		GFF4489	0.19	+0.7
4,481,345	+		GFF4489	0.19	-0.4
4,481,345	+		GFF4489	0.19	+1.4
4,481,347	-		GFF4489	0.19	-2.1
4,481,347	-		GFF4489	0.19	+0.5
4,481,347	-		GFF4489	0.19	-1.0
4,481,347	-		GFF4489	0.19	-1.2
4,481,347	-		GFF4489	0.19	+0.3
4,481,352	-		GFF4489	0.20	-1.2
4,481,352	-		GFF4489	0.20	-0.6
4,481,352	-		GFF4489	0.20	+0.3
4,481,352	-		GFF4489	0.20	-1.4
4,481,353	-		GFF4489	0.21	-0.2
4,481,353	-		GFF4489	0.21	-1.6
4,481,357	-		GFF4489	0.22	-0.9
4,481,359	-		GFF4489	0.22	-0.7
4,481,367	-		GFF4489	0.24	+0.7
4,481,387	-		GFF4489	0.30	-0.2
4,481,399	-		GFF4489	0.33	-0.9
4,481,406	-		GFF4489	0.35	-1.6
4,481,446	+		GFF4489	0.45	-0.1
4,481,454	-		GFF4489	0.47	+0.7
4,481,464	-		GFF4489	0.50	-1.4
4,481,475	+		GFF4489	0.53	-0.1
4,481,553	-		GFF4489	0.73	+0.1
4,481,579	+		GFF4489	0.80	+1.2
4,481,612	+		GFF4489	0.89	-0.2
4,481,635	-				-0.6
4,481,646	-				-0.9
4,481,653	-				+0.3
4,481,657	-				-0.2
4,481,657	-				-0.1
4,481,659	+				+0.8
4,481,675	-				-0.7
4,481,687	+				+1.1
4,481,687	+				+0.1
4,481,695	-				+1.0
4,481,695	-				-1.2
4,481,751	+				-0.4
4,481,751	+				+0.4
4,481,751	+				-0.6
4,481,751	+				-2.9
4,481,751	+				+0.0
4,481,751	+				-0.3
4,481,751	+				+0.0
4,481,751	+				-0.4
4,481,751	+				-0.9
4,481,756	+		GFF4490	0.10	+0.1
4,481,759	-		GFF4490	0.11	-0.6
4,481,759	-		GFF4490	0.11	-1.5
4,481,759	-		GFF4490	0.11	+0.3
4,481,759	-		GFF4490	0.11	-0.8
4,481,759	-		GFF4490	0.11	+0.0
4,481,759	-		GFF4490	0.11	-0.6
4,481,759	-		GFF4490	0.11	-0.2
4,481,763	+		GFF4490	0.11	+0.0
4,481,764	-		GFF4490	0.11	-1.4
4,481,764	-		GFF4490	0.11	-0.8
4,481,764	-		GFF4490	0.11	+0.9
4,481,782	-		GFF4490	0.13	-0.2
4,481,815	-		GFF4490	0.17	-1.2
4,481,817	+		GFF4490	0.17	-1.1
4,481,817	+		GFF4490	0.17	+0.8
4,481,822	+		GFF4490	0.17	-1.2
4,481,825	-		GFF4490	0.18	-0.3
4,481,825	-		GFF4490	0.18	+0.4
4,481,825	-		GFF4490	0.18	+0.3
4,481,831	+		GFF4490	0.18	+0.4
4,481,841	+		GFF4490	0.19	-0.2
4,481,844	-		GFF4490	0.20	+0.5
4,481,849	-		GFF4490	0.20	-1.2
4,481,859	-		GFF4490	0.21	+0.6
4,481,860	+		GFF4490	0.21	+0.7
4,481,879	-		GFF4490	0.24	-0.9
4,481,939	-		GFF4490	0.30	+0.9
4,481,940	+		GFF4490	0.30	-1.3
4,481,945	+		GFF4490	0.31	+1.0
4,481,949	-		GFF4490	0.31	-1.5
4,481,949	-		GFF4490	0.31	+0.6
4,481,953	-		GFF4490	0.31	-0.5
4,481,957	-		GFF4490	0.32	-0.5
4,481,963	-		GFF4490	0.32	-1.2
4,481,972	-		GFF4490	0.33	+0.4
4,481,972	-		GFF4490	0.33	-1.2
4,482,011	+		GFF4490	0.38	-0.4
4,482,058	+		GFF4490	0.43	-0.9
4,482,058	+		GFF4490	0.43	+0.1
4,482,063	+		GFF4490	0.43	+0.1
4,482,066	-		GFF4490	0.43	+0.9
4,482,066	-		GFF4490	0.43	+0.1
4,482,066	-		GFF4490	0.43	-1.1
4,482,068	+		GFF4490	0.44	+1.8
4,482,068	+		GFF4490	0.44	-0.2
4,482,068	+		GFF4490	0.44	-1.1
4,482,073	+		GFF4490	0.44	-1.0
4,482,073	+		GFF4490	0.44	-1.1
4,482,073	+		GFF4490	0.44	+0.1
4,482,075	+		GFF4490	0.44	+0.1
4,482,076	-		GFF4490	0.45	+0.5
4,482,081	-		GFF4490	0.45	-0.4
4,482,081	-		GFF4490	0.45	+0.1
4,482,081	-		GFF4490	0.45	-1.5
4,482,081	-		GFF4490	0.45	+0.6
4,482,081	-		GFF4490	0.45	-0.8
4,482,081	-		GFF4490	0.45	-0.3
4,482,094	+		GFF4490	0.46	+0.4
4,482,102	-		GFF4490	0.47	+0.3
4,482,104	+		GFF4490	0.48	-1.0
4,482,107	+		GFF4490	0.48	-0.4
4,482,108	+		GFF4490	0.48	+1.1
4,482,112	-		GFF4490	0.48	-1.5
4,482,149	+		GFF4490	0.52	+1.6
4,482,158	-		GFF4490	0.53	+1.0
4,482,173	+		GFF4490	0.55	-0.1
4,482,173	+		GFF4490	0.55	-0.5
4,482,181	-		GFF4490	0.56	+1.3
4,482,244	+		GFF4490	0.62	-0.4
4,482,246	+		GFF4490	0.63	-0.9
4,482,254	-		GFF4490	0.64	-0.9
4,482,261	+		GFF4490	0.64	-0.7
4,482,269	-		GFF4490	0.65	+0.3
4,482,269	-		GFF4490	0.65	-1.9
4,482,275	+		GFF4490	0.66	-1.2
4,482,275	+		GFF4490	0.66	+0.2
4,482,275	+		GFF4490	0.66	-1.2
4,482,275	+		GFF4490	0.66	-1.9
4,482,275	+		GFF4490	0.66	+0.7
4,482,275	+		GFF4490	0.66	+0.5
4,482,283	-		GFF4490	0.67	-0.5
4,482,283	-		GFF4490	0.67	-0.0
4,482,284	+		GFF4490	0.67	-1.4
4,482,285	+		GFF4490	0.67	-0.9
4,482,285	+		GFF4490	0.67	-0.2
4,482,285	+		GFF4490	0.67	-1.2
4,482,311	+		GFF4490	0.70	-0.3
4,482,319	-		GFF4490	0.71	-0.2
4,482,319	-		GFF4490	0.71	+0.3
4,482,321	+		GFF4490	0.71	-1.0
4,482,321	+		GFF4490	0.71	-1.1
4,482,341	+		GFF4490	0.73	-0.3
4,482,358	+		GFF4490	0.75	+0.8
4,482,358	+		GFF4490	0.75	+0.3
4,482,365	+		GFF4490	0.75	-0.7
4,482,366	-		GFF4490	0.76	-1.1
4,482,366	-		GFF4490	0.76	+0.7
4,482,375	-		GFF4490	0.76	-0.8
4,482,377	+		GFF4490	0.77	+0.8
4,482,377	+		GFF4490	0.77	-0.4
4,482,377	+		GFF4490	0.77	+0.8
4,482,377	+		GFF4490	0.77	-1.7
4,482,377	+		GFF4490	0.77	+1.5
4,482,377	+		GFF4490	0.77	+0.0
4,482,377	+		GFF4490	0.77	-1.2
4,482,383	+		GFF4490	0.77	-0.8
4,482,385	-		GFF4490	0.78	-0.5
4,482,385	-		GFF4490	0.78	-0.5
4,482,385	-		GFF4490	0.78	+0.4
4,482,385	-		GFF4490	0.78	+0.7
4,482,385	-		GFF4490	0.78	-1.5
4,482,391	-		GFF4490	0.78	-0.6
4,482,391	-		GFF4490	0.78	-1.1
4,482,391	-		GFF4490	0.78	+0.7
4,482,433	+		GFF4490	0.83	-1.8
4,482,433	+		GFF4490	0.83	+0.6
4,482,468	+		GFF4490	0.86	-1.0
4,482,468	+		GFF4490	0.86	+0.7
4,482,468	+		GFF4490	0.86	+1.1
4,482,468	+		GFF4490	0.86	-0.5
4,482,477	-		GFF4490	0.87	-0.2
4,482,504	-				+0.1
4,482,527	+				-1.2
4,482,538	+				+1.4
4,482,557	+				+0.5
4,482,557	+				-0.5
4,482,557	+				-1.5
4,482,557	+				+0.9
4,482,557	+				-0.9
4,482,565	+				-0.7
4,482,565	-				-1.2
4,482,565	-				+0.3
4,482,565	-				-1.2
4,482,565	-				-0.2
4,482,565	-				-1.1
4,482,565	-				+1.2
4,482,570	+				-0.5
4,482,606	-				-0.6
4,482,632	-				+0.5
4,482,649	-				+0.2