Strain Fitness in Sphingobium sp. HT1-2 around GFF4438

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,432,057	+		GFF4437	0.21	-0.6
4,432,060	-		GFF4437	0.21	-2.5
4,432,067	+		GFF4437	0.22	+0.9
4,432,109	+		GFF4437	0.26	-0.7
4,432,134	-		GFF4437	0.29	-0.9
4,432,144	+		GFF4437	0.30	+0.7
4,432,180	+		GFF4437	0.33	+0.3
4,432,185	+		GFF4437	0.34	+0.2
4,432,186	-		GFF4437	0.34	-1.2
4,432,187	+		GFF4437	0.34	-1.2
4,432,188	-		GFF4437	0.34	-1.0
4,432,210	+		GFF4437	0.36	-1.1
4,432,234	+		GFF4437	0.39	+0.1
4,432,242	-		GFF4437	0.40	-0.5
4,432,267	+		GFF4437	0.42	-0.7
4,432,275	-		GFF4437	0.43	-1.2
4,432,277	+		GFF4437	0.43	+0.3
4,432,303	+		GFF4437	0.46	+0.2
4,432,303	+		GFF4437	0.46	-1.8
4,432,311	-		GFF4437	0.47	+0.3
4,432,311	-		GFF4437	0.47	-1.0
4,432,311	-		GFF4437	0.47	-0.7
4,432,311	-		GFF4437	0.47	+0.3
4,432,437	+		GFF4437	0.60	-0.7
4,432,445	-		GFF4437	0.60	-1.1
4,432,526	-		GFF4437	0.69	+0.3
4,432,527	+		GFF4437	0.69	-1.3
4,432,536	-		GFF4437	0.70	-0.9
4,432,545	-		GFF4437	0.71	+0.9
4,432,545	-		GFF4437	0.71	-0.7
4,432,547	-		GFF4437	0.71	+0.3
4,432,582	+		GFF4437	0.74	-1.2
4,432,597	+		GFF4437	0.76	-1.5
4,432,600	-		GFF4437	0.76	-0.8
4,432,602	+		GFF4437	0.76	-0.7
4,432,606	+		GFF4437	0.77	-1.8
4,432,663	+		GFF4437	0.83	-0.4
4,432,676	+		GFF4437	0.84	+0.0
4,432,683	+		GFF4437	0.85	+2.1
4,432,687	+		GFF4437	0.85	-0.8
4,432,687	+		GFF4437	0.85	-0.0
4,432,695	-		GFF4437	0.86	-1.4
4,432,713	+		GFF4437	0.88	+0.3
4,432,713	+		GFF4437	0.88	+0.3
4,432,713	+		GFF4437	0.88	+0.6
4,432,713	+		GFF4437	0.88	-0.0
4,432,721	-		GFF4437	0.89	+0.5
4,432,721	-		GFF4437	0.89	-0.5
4,432,721	-		GFF4437	0.89	-1.6
4,432,721	-		GFF4437	0.89	-0.1
4,432,721	-		GFF4437	0.89	-0.0
4,432,721	-		GFF4437	0.89	+0.2
4,432,726	-		GFF4437	0.89	+0.4
4,432,726	-		GFF4437	0.89	-1.3
4,432,736	+				-1.4
4,432,744	-				-2.1
4,432,751	-				-0.0
4,432,752	-				-0.6
4,432,754	+				-1.0
4,432,762	+				-0.8
4,432,762	-				-0.3
4,432,790	-				-0.5
4,432,801	-				-1.2
4,432,801	-				-1.6
4,432,801	-				-1.1
4,432,801	-				+0.2
4,432,806	+				-0.8
4,432,806	+				+0.6
4,432,816	+				-1.7
4,432,816	+				+0.2
4,432,816	+				-1.2
4,432,816	+				+0.6
4,432,820	-				-1.7
4,432,822	+				+2.0
4,432,824	-				-0.7
4,432,824	-				+0.3
4,432,830	-				-0.0
4,432,831	-				-1.0
4,432,836	+				-1.1
4,432,924	-				-1.1
4,432,933	-				+1.5
4,432,958	-				-0.6
4,432,970	-				+0.2
4,432,970	-				+0.0
4,433,044	+				-1.9
4,433,050	+				-0.5
4,433,053	+				-1.6
4,433,058	-				+0.6
4,433,058	-				-1.1
4,433,058	-				-0.0
4,433,060	+				-0.3
4,433,129	+				+1.2
4,433,129	+				-1.5
4,433,129	+				-1.1
4,433,129	+				+0.5
4,433,140	+				-1.2
4,433,145	-				+0.1
4,433,148	-				+0.1
4,433,148	-				-0.7
4,433,185	-		GFF4438	0.12	-1.0
4,433,221	+		GFF4438	0.15	-1.0
4,433,229	-		GFF4438	0.16	+0.2
4,433,229	-		GFF4438	0.16	-2.0
4,433,296	+		GFF4438	0.21	-0.8
4,433,302	+		GFF4438	0.22	+0.4
4,433,310	-		GFF4438	0.22	-0.3
4,433,310	-		GFF4438	0.22	-1.3
4,433,332	+		GFF4438	0.24	-0.5
4,433,346	-		GFF4438	0.25	-0.8
4,433,376	-		GFF4438	0.28	-1.1
4,433,376	-		GFF4438	0.28	+0.7
4,433,379	-		GFF4438	0.28	-0.8
4,433,417	+		GFF4438	0.31	-0.7
4,433,429	+		GFF4438	0.32	-0.7
4,433,446	-		GFF4438	0.34	-1.0
4,433,472	+		GFF4438	0.36	-1.9
4,433,472	+		GFF4438	0.36	-0.8
4,433,472	+		GFF4438	0.36	-0.7
4,433,472	+		GFF4438	0.36	-1.2
4,433,472	+		GFF4438	0.36	-1.4
4,433,472	+		GFF4438	0.36	-1.1
4,433,480	-		GFF4438	0.37	-1.1
4,433,480	-		GFF4438	0.37	-0.8
4,433,480	-		GFF4438	0.37	-0.0
4,433,480	-		GFF4438	0.37	-0.7
4,433,480	-		GFF4438	0.37	-0.7
4,433,545	-		GFF4438	0.42	-0.7
4,433,595	-		GFF4438	0.46	-0.9
4,433,616	+		GFF4438	0.48	-1.3
4,433,632	+		GFF4438	0.49	-0.9
4,433,640	-		GFF4438	0.50	-0.8
4,433,640	-		GFF4438	0.50	+1.1
4,433,642	+		GFF4438	0.50	-0.7
4,433,642	+		GFF4438	0.50	-0.2
4,433,650	-		GFF4438	0.51	+0.5
4,433,683	+		GFF4438	0.53	-2.0
4,433,688	+		GFF4438	0.54	-1.0
4,433,688	+		GFF4438	0.54	-1.0
4,433,688	+		GFF4438	0.54	-1.3
4,433,691	-		GFF4438	0.54	-0.8
4,433,698	+		GFF4438	0.55	-0.8
4,433,698	+		GFF4438	0.55	-1.0
4,433,698	+		GFF4438	0.55	+0.3
4,433,698	+		GFF4438	0.55	-1.1
4,433,698	+		GFF4438	0.55	+0.1
4,433,706	-		GFF4438	0.55	-0.9
4,433,706	-		GFF4438	0.55	-0.7
4,433,710	+		GFF4438	0.56	-0.9
4,433,711	-		GFF4438	0.56	-2.0
4,433,716	-		GFF4438	0.56	-1.4
4,433,752	-		GFF4438	0.59	+0.9
4,433,837	-		GFF4438	0.66	-0.1
4,433,847	-		GFF4438	0.67	-0.4
4,433,856	+		GFF4438	0.68	+0.4
4,433,864	-		GFF4438	0.68	-1.3
4,433,867	+		GFF4438	0.69	-0.7
4,433,875	-		GFF4438	0.69	+1.6
4,433,875	-		GFF4438	0.69	-0.7
4,433,875	-		GFF4438	0.69	+0.7
4,433,875	-		GFF4438	0.69	-1.1
4,433,877	+		GFF4438	0.69	-1.5
4,433,885	-		GFF4438	0.70	+0.3
4,433,885	-		GFF4438	0.70	-1.5
4,433,912	+		GFF4438	0.72	+0.2
4,433,912	+		GFF4438	0.72	-0.8
4,433,912	+		GFF4438	0.72	-1.2
4,433,914	+		GFF4438	0.73	-1.3
4,433,932	+		GFF4438	0.74	-1.7
4,433,939	+		GFF4438	0.75	+0.4
4,433,939	+		GFF4438	0.75	-0.7
4,433,940	+		GFF4438	0.75	-1.3
4,434,003	+		GFF4438	0.80	-1.6
4,434,003	+		GFF4438	0.80	+0.3
4,434,003	+		GFF4438	0.80	-0.9
4,434,032	+		GFF4438	0.82	-0.3
4,434,071	-		GFF4438	0.86	-1.0
4,434,122	+		GFF4438	0.90	-0.8
4,434,130	-				+1.3
4,434,140	+				-0.4
4,434,205	-				-1.3
4,434,209	+				-1.0
4,434,209	+				-0.8
4,434,209	+				+0.3
4,434,217	-				-1.2
4,434,228	-				+0.1
4,434,228	-				-0.8
4,434,239	+				-0.1
4,434,247	-				+0.2
4,434,284	-				-0.9
4,434,344	-				+0.6
4,434,344	-				+0.7
4,434,346	+				-0.7
4,434,346	+				-1.3
4,434,353	+				+0.1
4,434,354	-				-1.4
4,434,354	-				-0.8
4,434,423	+				+1.0
4,434,430	+				+0.1
4,434,430	+				+0.2
4,434,431	-				-0.6
4,434,435	-				+0.3
4,434,436	+				+0.2
4,434,437	+				-1.1
4,434,438	-				-0.3
4,434,442	+				-1.5
4,434,446	+				-1.8
4,434,449	+				-0.6
4,434,454	+				+0.3
4,434,454	+				-0.7
4,434,454	+				-1.0
4,434,454	+				-1.1
4,434,454	+				-0.3
4,434,454	+				-0.9
4,434,454	+				+0.8
4,434,454	+				-1.0
4,434,454	+				-0.1
4,434,454	+				-0.1
4,434,454	+				-0.6
4,434,454	+				+1.6
4,434,454	+				+0.3
4,434,454	+				-0.2
4,434,454	+				-1.0
4,434,454	+				-0.6
4,434,454	+				-0.0
4,434,454	-				+0.8
4,434,457	-				+1.2
4,434,461	+				+1.0
4,434,462	-				-0.3
4,434,462	-				+0.6
4,434,462	-				-0.3
4,434,462	-				-1.4
4,434,462	-				-1.1
4,434,462	-				-1.2
4,434,462	-				-0.3
4,434,462	-				+0.3
4,434,462	-				-0.2
4,434,462	-				+0.2
4,434,462	-				-0.9
4,434,462	-				+0.3
4,434,464	+				-1.1
4,434,464	+				-0.4
4,434,464	+				+0.4
4,434,464	+				-0.9
4,434,467	-				+0.3
4,434,472	-				-0.1
4,434,472	-				-0.4
4,434,472	-				+1.1
4,434,480	-				-1.3
4,434,499	-				-0.3
4,434,628	+				+0.2
4,434,628	+				-1.6
4,434,636	-				-0.1
4,434,723	+				-1.0
4,434,760	+				+1.5
4,434,767	+				-1.0
4,434,767	+				-1.3
4,434,768	-				-1.0