Strain Fitness in Sphingobium sp. HT1-2 around GFF4394

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,394,852	+		GFF4393	0.27	-1.3
4,394,856	-		GFF4393	0.27	+0.9
4,394,857	+		GFF4393	0.27	+1.1
4,394,857	+		GFF4393	0.27	-1.4
4,394,857	+		GFF4393	0.27	-2.0
4,394,857	+		GFF4393	0.27	-0.8
4,394,857	+		GFF4393	0.27	-0.8
4,394,857	+		GFF4393	0.27	+0.3
4,394,857	+		GFF4393	0.27	-1.6
4,394,862	+		GFF4393	0.27	-0.0
4,394,865	-		GFF4393	0.28	+0.5
4,394,865	-		GFF4393	0.28	+0.5
4,394,865	-		GFF4393	0.28	-0.6
4,394,865	-		GFF4393	0.28	-1.1
4,394,870	-		GFF4393	0.28	-0.2
4,394,870	-		GFF4393	0.28	+0.5
4,394,895	+		GFF4393	0.30	-1.8
4,394,918	+		GFF4393	0.32	-0.2
4,394,927	-		GFF4393	0.32	-1.2
4,394,936	+		GFF4393	0.33	+0.2
4,394,952	+		GFF4393	0.34	+0.2
4,394,952	+		GFF4393	0.34	-0.7
4,394,952	+		GFF4393	0.34	+0.5
4,394,952	+		GFF4393	0.34	+0.4
4,394,960	-		GFF4393	0.35	-0.4
4,394,985	+		GFF4393	0.37	-1.7
4,394,985	+		GFF4393	0.37	-1.3
4,394,985	+		GFF4393	0.37	-0.4
4,394,990	+		GFF4393	0.37	-1.6
4,394,990	+		GFF4393	0.37	+0.7
4,394,990	+		GFF4393	0.37	-0.5
4,394,993	-		GFF4393	0.37	-1.1
4,394,993	-		GFF4393	0.37	-2.1
4,394,998	-		GFF4393	0.37	+0.5
4,394,998	-		GFF4393	0.37	-0.7
4,394,998	-		GFF4393	0.37	+0.2
4,395,005	-		GFF4393	0.38	-0.5
4,395,013	-		GFF4393	0.39	+0.0
4,395,024	+		GFF4393	0.39	-1.3
4,395,024	+		GFF4393	0.39	-0.8
4,395,047	+		GFF4393	0.41	+0.8
4,395,047	+		GFF4393	0.41	-0.7
4,395,047	+		GFF4393	0.41	-0.2
4,395,049	+		GFF4393	0.41	-2.4
4,395,053	-		GFF4393	0.42	-0.0
4,395,055	-		GFF4393	0.42	-0.8
4,395,057	-		GFF4393	0.42	-0.2
4,395,059	+		GFF4393	0.42	+0.4
4,395,072	+		GFF4393	0.43	-1.1
4,395,072	+		GFF4393	0.43	-0.6
4,395,072	+		GFF4393	0.43	+0.3
4,395,072	+		GFF4393	0.43	-1.1
4,395,072	-		GFF4393	0.43	+0.2
4,395,077	+		GFF4393	0.43	-0.8
4,395,077	+		GFF4393	0.43	-0.1
4,395,077	+		GFF4393	0.43	-1.8
4,395,077	+		GFF4393	0.43	-0.6
4,395,077	+		GFF4393	0.43	-1.1
4,395,077	+		GFF4393	0.43	-0.8
4,395,077	+		GFF4393	0.43	-0.0
4,395,080	-		GFF4393	0.44	-2.9
4,395,080	-		GFF4393	0.44	-0.9
4,395,080	-		GFF4393	0.44	-1.1
4,395,080	-		GFF4393	0.44	-0.6
4,395,080	-		GFF4393	0.44	-0.9
4,395,085	-		GFF4393	0.44	+1.1
4,395,085	-		GFF4393	0.44	-0.3
4,395,085	-		GFF4393	0.44	-0.1
4,395,085	-		GFF4393	0.44	+0.1
4,395,085	-		GFF4393	0.44	-0.8
4,395,085	-		GFF4393	0.44	-2.2
4,395,085	-		GFF4393	0.44	-1.5
4,395,087	+		GFF4393	0.44	-1.3
4,395,087	+		GFF4393	0.44	-0.7
4,395,087	+		GFF4393	0.44	-1.9
4,395,087	+		GFF4393	0.44	+0.3
4,395,087	+		GFF4393	0.44	-1.2
4,395,087	+		GFF4393	0.44	+0.8
4,395,087	+		GFF4393	0.44	-0.9
4,395,087	+		GFF4393	0.44	-1.1
4,395,087	+		GFF4393	0.44	-1.4
4,395,095	-		GFF4393	0.45	-0.8
4,395,095	-		GFF4393	0.45	+0.1
4,395,095	-		GFF4393	0.45	-0.6
4,395,095	-		GFF4393	0.45	-0.3
4,395,095	-		GFF4393	0.45	-1.4
4,395,095	-		GFF4393	0.45	-1.3
4,395,095	-		GFF4393	0.45	-0.7
4,395,095	-		GFF4393	0.45	-1.6
4,395,095	-		GFF4393	0.45	-0.8
4,395,095	-		GFF4393	0.45	-0.1
4,395,095	-		GFF4393	0.45	-0.0
4,395,095	-		GFF4393	0.45	-0.8
4,395,095	-		GFF4393	0.45	-1.9
4,395,153	+		GFF4393	0.49	-0.4
4,395,181	+		GFF4393	0.51	-0.2
4,395,189	-		GFF4393	0.52	-0.9
4,395,189	-		GFF4393	0.52	+0.2
4,395,225	-		GFF4393	0.54	-1.6
4,395,225	-		GFF4393	0.54	-1.8
4,395,225	-		GFF4393	0.54	-3.3
4,395,240	+		GFF4393	0.55	-0.8
4,395,255	+		GFF4393	0.57	+1.5
4,395,255	+		GFF4393	0.57	-0.9
4,395,258	-		GFF4393	0.57	-1.1
4,395,258	-		GFF4393	0.57	-0.8
4,395,263	-		GFF4393	0.57	-0.9
4,395,293	+		GFF4393	0.59	-2.0
4,395,297	+		GFF4393	0.60	-1.2
4,395,299	+		GFF4393	0.60	+0.2
4,395,307	-		GFF4393	0.60	-0.5
4,395,307	-		GFF4393	0.60	-2.0
4,395,307	-		GFF4393	0.60	+1.4
4,395,331	+		GFF4393	0.62	-0.5
4,395,339	-		GFF4393	0.63	-0.6
4,395,341	+		GFF4393	0.63	+0.3
4,395,358	+		GFF4393	0.64	+0.4
4,395,358	+		GFF4393	0.64	-2.0
4,395,366	-		GFF4393	0.65	-0.9
4,395,386	+		GFF4393	0.66	+0.0
4,395,394	+		GFF4393	0.67	+0.0
4,395,394	-		GFF4393	0.67	-0.6
4,395,406	+		GFF4393	0.68	-1.3
4,395,414	-		GFF4393	0.68	-0.2
4,395,414	-		GFF4393	0.68	-0.9
4,395,416	+		GFF4393	0.69	-0.3
4,395,424	-		GFF4393	0.69	-2.7
4,395,428	+		GFF4393	0.69	-1.8
4,395,449	-		GFF4393	0.71	-2.2
4,395,470	+		GFF4393	0.73	-1.5
4,395,470	+		GFF4393	0.73	-0.0
4,395,470	+		GFF4393	0.73	-1.3
4,395,470	-		GFF4393	0.73	-0.9
4,395,478	-		GFF4393	0.73	-0.5
4,395,485	+		GFF4393	0.74	-0.7
4,395,493	-		GFF4393	0.74	-0.0
4,395,493	-		GFF4393	0.74	-0.7
4,395,516	+		GFF4393	0.76	-1.9
4,395,524	-		GFF4393	0.77	+0.5
4,395,537	+		GFF4393	0.78	-0.2
4,395,537	+		GFF4393	0.78	-2.0
4,395,559	+		GFF4393	0.79	+0.2
4,395,559	+		GFF4393	0.79	-0.0
4,395,564	+		GFF4393	0.80	-1.7
4,395,583	+		GFF4393	0.81	-0.9
4,395,585	-		GFF4393	0.81	-1.2
4,395,589	-		GFF4393	0.81	-0.1
4,395,590	+		GFF4393	0.81	+0.8
4,395,592	+		GFF4393	0.82	-1.6
4,395,648	+		GFF4393	0.86	+0.7
4,395,670	+		GFF4393	0.87	-0.8
4,395,670	+		GFF4393	0.87	-0.1
4,395,670	+		GFF4393	0.87	-1.3
4,395,687	+		GFF4393	0.89	+0.4
4,395,687	+		GFF4393	0.89	-0.7
4,395,688	-		GFF4393	0.89	-0.6
4,395,688	-		GFF4393	0.89	-1.2
4,395,688	-		GFF4393	0.89	+0.0
4,395,730	+				-1.7
4,395,740	+				+0.2
4,395,740	+				-0.2
4,395,750	+				+0.7
4,395,783	+				-0.7
4,395,783	+				+0.1
4,395,792	+				+0.3
4,395,792	+				+0.3
4,395,797	+				+0.7
4,395,809	+				-0.5
4,395,817	-				-0.5
4,395,832	-				-0.4
4,395,842	+				-0.8
4,395,842	+				-1.1
4,395,842	+				+0.3
4,395,850	-				-0.3
4,395,850	-				-0.6
4,395,850	-				-0.1
4,395,852	+				-2.8
4,395,852	+				+0.9
4,395,855	-				-1.9
4,395,860	-				-0.0
4,395,872	+				+0.2
4,395,882	+				-2.0
4,395,882	+				-0.3
4,395,882	+				-1.8
4,395,882	+				-0.4
4,395,882	+				-0.6
4,395,882	+				-0.8
4,395,882	+				-0.6
4,395,882	+				-0.6
4,395,882	+				-1.8
4,395,890	-				+0.9
4,395,890	-				+0.7
4,395,890	-				-0.6
4,395,890	-				-2.6
4,395,890	-				-0.2
4,395,890	-				+1.1
4,395,890	-				-1.3
4,395,890	-				-0.9
4,395,898	-				-1.7
4,395,907	+				-1.7
4,395,915	-		GFF4394	0.10	-1.6
4,395,915	-		GFF4394	0.10	-0.5
4,395,915	-		GFF4394	0.10	-1.2
4,395,961	+		GFF4394	0.16	-2.9
4,395,961	+		GFF4394	0.16	-0.2
4,395,966	+		GFF4394	0.17	-1.6
4,395,966	+		GFF4394	0.17	-0.9
4,395,966	+		GFF4394	0.17	-0.3
4,395,966	+		GFF4394	0.17	+0.2
4,395,971	+		GFF4394	0.17	+0.9
4,395,971	+		GFF4394	0.17	+0.1
4,395,971	+		GFF4394	0.17	+0.2
4,395,974	-		GFF4394	0.18	-1.5
4,395,982	+		GFF4394	0.19	+0.4
4,395,982	+		GFF4394	0.19	-0.6
4,395,989	-		GFF4394	0.19	-0.6
4,395,990	-		GFF4394	0.20	+1.1
4,395,990	-		GFF4394	0.20	-1.8
4,396,003	-		GFF4394	0.21	-0.8
4,396,031	+		GFF4394	0.25	+0.3
4,396,031	+		GFF4394	0.25	+1.2
4,396,039	-		GFF4394	0.26	-0.7
4,396,041	+		GFF4394	0.26	-1.8
4,396,041	+		GFF4394	0.26	-0.8
4,396,051	+		GFF4394	0.27	-1.9
4,396,059	-		GFF4394	0.28	+0.5
4,396,059	-		GFF4394	0.28	-1.6
4,396,059	-		GFF4394	0.28	+0.0
4,396,059	-		GFF4394	0.28	-1.9
4,396,094	-		GFF4394	0.33	-1.0
4,396,119	-		GFF4394	0.36	+0.1
4,396,123	+		GFF4394	0.36	-1.0
4,396,123	+		GFF4394	0.36	-2.4
4,396,173	+		GFF4394	0.42	-0.9
4,396,181	-		GFF4394	0.43	-2.2
4,396,200	+		GFF4394	0.46	-1.0
4,396,222	+		GFF4394	0.49	-3.0
4,396,250	+		GFF4394	0.52	-0.7
4,396,275	-		GFF4394	0.55	+0.4
4,396,301	-		GFF4394	0.58	+0.1
4,396,305	+		GFF4394	0.59	-0.5
4,396,318	+		GFF4394	0.61	+0.7
4,396,326	-		GFF4394	0.62	-1.6
4,396,335	-		GFF4394	0.63	+0.1
4,396,342	+		GFF4394	0.64	-0.1
4,396,379	+		GFF4394	0.68	-0.1
4,396,380	+		GFF4394	0.68	+0.9
4,396,390	+		GFF4394	0.70	-0.1
4,396,390	+		GFF4394	0.70	+0.2
4,396,391	+		GFF4394	0.70	-0.9
4,396,396	+		GFF4394	0.70	+0.4
4,396,398	-		GFF4394	0.71	+0.4
4,396,399	-		GFF4394	0.71	-1.1
4,396,415	+		GFF4394	0.73	-2.1
4,396,432	+		GFF4394	0.75	-0.4
4,396,432	+		GFF4394	0.75	+0.4
4,396,432	+		GFF4394	0.75	+0.6
4,396,432	+		GFF4394	0.75	-1.5
4,396,432	+		GFF4394	0.75	-0.2
4,396,432	+		GFF4394	0.75	+0.8
4,396,432	+		GFF4394	0.75	+0.4
4,396,440	-		GFF4394	0.76	+0.8
4,396,440	-		GFF4394	0.76	-0.5
4,396,440	-		GFF4394	0.76	-1.9
4,396,440	-		GFF4394	0.76	+0.8
4,396,440	-		GFF4394	0.76	+0.5
4,396,446	+		GFF4394	0.77	-1.9
4,396,457	+		GFF4394	0.78	-1.2
4,396,457	+		GFF4394	0.78	-0.9
4,396,457	+		GFF4394	0.78	-2.1
4,396,465	+		GFF4394	0.79	-0.0
4,396,465	+		GFF4394	0.79	-1.0
4,396,465	+		GFF4394	0.79	-0.7
4,396,465	-		GFF4394	0.79	-3.1
4,396,473	-		GFF4394	0.80	-0.9
4,396,473	-		GFF4394	0.80	-0.6
4,396,473	-		GFF4394	0.80	+0.8
4,396,473	-		GFF4394	0.80	-0.2
4,396,473	-		GFF4394	0.80	-0.4
4,396,473	-		GFF4394	0.80	+0.0
4,396,473	-		GFF4394	0.80	+0.3
4,396,474	-		GFF4394	0.80	-1.0
4,396,481	+		GFF4394	0.81	-1.6
4,396,489	-		GFF4394	0.82	-0.9
4,396,518	-		GFF4394	0.86	-0.2
4,396,538	-		GFF4394	0.88	+0.2
4,396,543	+		GFF4394	0.89	-0.1
4,396,580	-				-1.0
4,396,580	-				-0.8
4,396,605	-				-1.6
4,396,605	-				+1.5
4,396,624	+				-1.2
4,396,632	-				-1.1
4,396,634	-				+0.2
4,396,645	+				-1.0
4,396,655	-				+0.0
4,396,677	+				-0.9
4,396,698	+		GFF4395	0.18	-0.5
4,396,714	-		GFF4395	0.24	-1.9
4,396,716	+		GFF4395	0.25	-1.0
4,396,716	+		GFF4395	0.25	-2.1
4,396,716	+		GFF4395	0.25	-0.8
4,396,773	-		GFF4395	0.47	-1.0
4,396,784	+		GFF4395	0.51	-0.0
4,396,784	+		GFF4395	0.51	-0.5
4,396,784	+		GFF4395	0.51	+0.1
4,396,792	-		GFF4395	0.54	+0.7
4,396,792	-		GFF4395	0.54	-0.3
4,396,792	-		GFF4395	0.54	-0.8
4,396,794	+		GFF4395	0.55	-0.7
4,396,794	+		GFF4395	0.55	+0.2
4,396,794	+		GFF4395	0.55	+0.3
4,396,794	+		GFF4395	0.55	-0.0
4,396,802	-		GFF4395	0.58	+0.4
4,396,802	-		GFF4395	0.58	-0.2
4,396,802	-		GFF4395	0.58	-0.9
4,396,811	+		GFF4395	0.62	-0.2
4,396,830	+		GFF4395	0.69	-1.5
4,396,843	-		GFF4395	0.74	+0.1
4,396,862	+		GFF4395	0.81	-2.0
4,396,862	+		GFF4395	0.81	+0.2
4,396,865	-		GFF4395	0.83	-0.9
4,396,865	-		GFF4395	0.83	-2.3
4,396,865	-		GFF4395	0.83	-0.7
4,396,867	+		GFF4395	0.83	-1.0
4,396,867	+		GFF4395	0.83	+0.8
4,396,867	+		GFF4395	0.83	-0.6
4,396,867	+		GFF4395	0.83	+0.7
4,396,870	-		GFF4395	0.84	-2.3
4,396,870	-		GFF4395	0.84	-0.2
4,396,875	-		GFF4395	0.86	-1.7
4,396,875	-		GFF4395	0.86	+1.4
4,396,877	+		GFF4395	0.87	-0.9
4,396,918	+				-0.9
4,396,918	+				-0.9
4,396,926	-				-0.4
4,396,928	+				+0.3
4,396,944	+				-1.9
4,396,944	+				-1.2
4,396,944	+				-0.7
4,396,944	+				-0.8
4,396,947	-				-2.7
4,396,952	-				-0.8
4,396,952	-				-1.1
4,396,952	-				-0.0
4,396,952	-				-0.5
4,396,952	-				+0.3
4,396,952	-				+0.2
4,396,952	-				-1.1
4,396,952	-				-3.1
4,396,959	+				-0.1
4,396,972	+				-0.8
4,396,978	+				-0.2
4,396,993	-				+0.7
4,396,993	-				+0.1
4,397,002	+				-0.1
4,397,002	-				-0.6
4,397,057	-				-0.6
4,397,079	+				-1.7
4,397,091	-				-0.3
4,397,105	+				-0.4
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4,397,129	-				-1.3
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4,397,182	-		GFF4396	0.12	-1.9
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4,397,427	+		GFF4396	0.70	-1.7
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4,397,530	-				-1.0
4,397,530	-				-0.1
4,397,541	+				-0.5
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4,397,555	-				-0.9
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4,397,575	+				-0.8
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4,397,583	-				-1.8
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4,397,585	+				-0.6
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4,397,610	+				-0.8
4,397,615	+				-1.2
4,397,618	-				-0.9
4,397,620	+				-0.6
4,397,620	+				-0.6