Strain Fitness in Sphingobium sp. HT1-2 around GFF4304

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,312,469	-		GFF4302	0.88	-1.0
4,312,477	-		GFF4302	0.89	+0.8
4,312,479	+		GFF4302	0.89	+1.0
4,312,479	+		GFF4302	0.89	-1.2
4,312,487	-		GFF4302	0.89	-0.2
4,312,496	-		GFF4302	0.90	+0.5
4,312,497	+		GFF4302	0.90	-1.0
4,312,501	-				+0.0
4,312,505	-				-1.0
4,312,505	-				-2.1
4,312,505	-				+0.4
4,312,505	-				-1.0
4,312,505	-				-1.4
4,312,508	+				-2.2
4,312,508	+				+1.7
4,312,512	+				+1.3
4,312,515	+				-0.3
4,312,522	+				-1.3
4,312,522	+				-0.8
4,312,533	+				-0.8
4,312,541	-				+1.3
4,312,541	-				+0.4
4,312,541	-				+0.4
4,312,546	-				-1.2
4,312,546	-				+0.7
4,312,551	-				-0.6
4,312,551	-				-1.0
4,312,556	-				-2.1
4,312,581	+				-2.6
4,312,583	-				+0.8
4,312,591	+				-1.2
4,312,591	+				-2.3
4,312,591	+				+0.7
4,312,591	+				-0.6
4,312,591	+				-0.3
4,312,591	+				-1.4
4,312,591	+				-0.2
4,312,591	+				-0.5
4,312,591	+				-1.5
4,312,591	+				-0.6
4,312,591	+				-1.3
4,312,591	+				+0.3
4,312,591	+				+0.3
4,312,594	-				+0.9
4,312,594	-				-1.0
4,312,599	-				-1.4
4,312,599	-				+0.8
4,312,599	-				-0.2
4,312,599	-				+0.2
4,312,599	-				+0.7
4,312,599	-				-1.7
4,312,599	-				-0.4
4,312,599	-				-1.6
4,312,599	-				-1.3
4,312,599	-				+0.7
4,312,599	-				+0.9
4,312,607	-				+0.3
4,312,614	+				-0.3
4,312,615	+				+0.5
4,312,615	+				-2.3
4,312,627	-				-0.9
4,312,652	+				+1.4
4,312,658	+				-0.1
4,312,660	-				-1.2
4,312,663	+				-0.1
4,312,663	+				-2.3
4,312,671	-				-1.0
4,312,671	-				-0.8
4,312,671	-				-0.2
4,312,671	-				+0.4
4,312,712	+				-0.7
4,312,729	+				+0.4
4,312,729	+				-1.1
4,312,729	+				+1.5
4,312,729	+				-0.0
4,312,729	+				-2.4
4,312,729	+				-1.7
4,312,729	+				-1.1
4,312,737	-				-1.5
4,312,737	-				-0.6
4,312,737	-				-1.1
4,312,737	-				+0.1
4,312,737	-				+0.0
4,312,737	-				+1.0
4,312,737	-				+0.1
4,312,737	-				-1.2
4,312,737	-				+0.1
4,312,760	+				-0.5
4,312,762	+				-1.3
4,312,768	-				-2.4
4,312,768	-				+0.0
4,312,778	+				-2.1
4,312,779	+				-2.7
4,312,785	+				-0.2
4,312,793	-		GFF4303	0.11	-1.5
4,312,794	-		GFF4303	0.11	-0.3
4,312,813	-		GFF4303	0.13	+0.4
4,312,827	+		GFF4303	0.15	-0.3
4,312,827	+		GFF4303	0.15	-1.2
4,312,827	+		GFF4303	0.15	-1.2
4,312,827	+		GFF4303	0.15	+0.3
4,312,827	+		GFF4303	0.15	-1.5
4,312,828	-		GFF4303	0.15	-1.2
4,312,835	-		GFF4303	0.16	-0.8
4,312,835	-		GFF4303	0.16	-0.3
4,312,847	+		GFF4303	0.18	+0.4
4,312,854	+		GFF4303	0.19	-0.3
4,312,854	+		GFF4303	0.19	+0.8
4,312,854	+		GFF4303	0.19	-1.1
4,312,854	+		GFF4303	0.19	-0.6
4,312,854	-		GFF4303	0.19	-0.8
4,312,859	+		GFF4303	0.20	-0.7
4,312,862	-		GFF4303	0.20	-1.5
4,312,862	-		GFF4303	0.20	-0.6
4,312,862	-		GFF4303	0.20	-0.4
4,312,869	+		GFF4303	0.21	-1.4
4,312,899	+		GFF4303	0.25	-1.8
4,312,899	+		GFF4303	0.25	-0.9
4,312,902	-		GFF4303	0.25	-0.1
4,312,907	-		GFF4303	0.26	-1.4
4,312,907	-		GFF4303	0.26	-1.3
4,312,907	-		GFF4303	0.26	-0.5
4,312,907	-		GFF4303	0.26	+0.3
4,312,907	-		GFF4303	0.26	-0.7
4,312,914	+		GFF4303	0.27	-0.2
4,312,922	-		GFF4303	0.28	-1.0
4,312,924	+		GFF4303	0.28	-1.1
4,312,929	+		GFF4303	0.29	-0.2
4,312,932	-		GFF4303	0.29	-1.1
4,312,934	+		GFF4303	0.30	-0.4
4,312,937	-		GFF4303	0.30	-1.4
4,312,937	-		GFF4303	0.30	-3.0
4,312,937	-		GFF4303	0.30	-0.2
4,312,937	-		GFF4303	0.30	-0.3
4,312,940	+		GFF4303	0.31	+0.4
4,312,948	-		GFF4303	0.32	-0.2
4,312,953	-		GFF4303	0.32	+0.2
4,312,962	+		GFF4303	0.33	+0.0
4,312,962	+		GFF4303	0.33	-0.6
4,312,962	+		GFF4303	0.33	-0.4
4,312,970	-		GFF4303	0.35	-0.5
4,312,970	-		GFF4303	0.35	-0.1
4,312,974	+		GFF4303	0.35	-1.9
4,312,974	+		GFF4303	0.35	+0.3
4,312,976	+		GFF4303	0.35	+0.8
4,312,979	+		GFF4303	0.36	-0.5
4,312,982	-		GFF4303	0.36	-0.2
4,312,989	-		GFF4303	0.37	+0.4
4,313,004	+		GFF4303	0.39	-0.7
4,313,004	-		GFF4303	0.39	-0.3
4,313,004	-		GFF4303	0.39	-0.2
4,313,007	-		GFF4303	0.40	-1.8
4,313,009	+		GFF4303	0.40	-2.2
4,313,017	-		GFF4303	0.41	-0.6
4,313,037	-		GFF4303	0.44	+0.5
4,313,042	-		GFF4303	0.44	-1.0
4,313,047	-		GFF4303	0.45	-2.4
4,313,061	+		GFF4303	0.47	+0.3
4,313,062	-		GFF4303	0.47	-1.2
4,313,078	+		GFF4303	0.49	+0.4
4,313,085	+		GFF4303	0.50	-0.1
4,313,093	-		GFF4303	0.51	-1.0
4,313,103	+		GFF4303	0.52	+0.1
4,313,109	+		GFF4303	0.53	-0.4
4,313,145	+		GFF4303	0.58	-0.7
4,313,146	+		GFF4303	0.58	-0.7
4,313,146	+		GFF4303	0.58	-0.7
4,313,147	+		GFF4303	0.58	+0.4
4,313,147	+		GFF4303	0.58	-0.2
4,313,147	+		GFF4303	0.58	+0.8
4,313,147	+		GFF4303	0.58	-0.7
4,313,153	-		GFF4303	0.59	+0.5
4,313,154	-		GFF4303	0.59	-0.4
4,313,154	-		GFF4303	0.59	-1.3
4,313,154	-		GFF4303	0.59	-0.9
4,313,155	-		GFF4303	0.59	-0.6
4,313,155	-		GFF4303	0.59	-0.3
4,313,160	-		GFF4303	0.60	+2.1
4,313,161	+		GFF4303	0.60	+1.0
4,313,165	-		GFF4303	0.61	-0.4
4,313,179	-		GFF4303	0.63	-1.2
4,313,194	+		GFF4303	0.65	+1.0
4,313,207	-		GFF4303	0.66	-1.9
4,313,248	+		GFF4303	0.72	+0.6
4,313,264	-		GFF4303	0.74	-1.7
4,313,298	+		GFF4303	0.79	+1.3
4,313,298	+		GFF4303	0.79	-0.7
4,313,298	+		GFF4303	0.79	-1.2
4,313,306	-		GFF4303	0.80	-2.4
4,313,306	-		GFF4303	0.80	-1.3
4,313,308	+		GFF4303	0.80	-0.2
4,313,316	-		GFF4303	0.81	-0.1
4,313,332	+		GFF4303	0.83	-1.3
4,313,345	-		GFF4303	0.85	+0.8
4,313,376	-		GFF4303	0.89	-1.7
4,313,378	+		GFF4303	0.89	-0.1
4,313,378	+		GFF4303	0.89	-1.9
4,313,378	+		GFF4303	0.89	-0.2
4,313,378	+		GFF4303	0.89	-0.6
4,313,378	+		GFF4303	0.89	-1.3
4,313,378	+		GFF4303	0.89	-1.4
4,313,386	-				-1.3
4,313,386	-				-0.2
4,313,386	-				-0.2
4,313,386	-				+1.5
4,313,390	+				-1.2
4,313,390	+				-0.4
4,313,398	-				-1.2
4,313,402	-				-0.6
4,313,418	-				-1.4
4,313,437	+				+0.1
4,313,445	-				-1.2
4,313,454	-				-1.4
4,313,463	+				-1.8
4,313,463	+				-3.2
4,313,463	+				-1.3
4,313,463	+				-0.3
4,313,471	-				+1.0
4,313,490	+				+0.0
4,313,490	+				+0.4
4,313,498	-				-0.6
4,313,504	+				+1.4
4,313,510	+				-0.4
4,313,561	+				-0.1
4,313,602	+		GFF4304	0.14	-0.1
4,313,627	+		GFF4304	0.16	-0.6
4,313,635	-		GFF4304	0.17	-1.1
4,313,652	-		GFF4304	0.18	+1.0
4,313,652	-		GFF4304	0.18	+0.4
4,313,663	-		GFF4304	0.20	-0.9
4,313,673	+		GFF4304	0.21	-0.1
4,313,673	+		GFF4304	0.21	+0.0
4,313,681	-		GFF4304	0.21	-0.1
4,313,681	-		GFF4304	0.21	+0.8
4,313,682	-		GFF4304	0.21	+0.4
4,313,682	-		GFF4304	0.21	-0.1
4,313,682	-		GFF4304	0.21	-0.9
4,313,689	+		GFF4304	0.22	+0.8
4,313,705	-		GFF4304	0.24	+0.3
4,313,710	-		GFF4304	0.24	-0.0
4,313,713	-		GFF4304	0.24	+0.6
4,313,715	+		GFF4304	0.25	-0.7
4,313,715	+		GFF4304	0.25	+0.1
4,313,723	-		GFF4304	0.25	-1.9
4,313,723	-		GFF4304	0.25	-0.4
4,313,745	+		GFF4304	0.28	-1.9
4,313,750	+		GFF4304	0.28	-2.1
4,313,750	+		GFF4304	0.28	-0.6
4,313,758	-		GFF4304	0.29	+0.6
4,313,758	-		GFF4304	0.29	-0.2
4,313,798	+		GFF4304	0.33	-1.1
4,313,820	+		GFF4304	0.35	-1.3
4,313,828	+		GFF4304	0.36	-0.1
4,313,828	+		GFF4304	0.36	-1.0
4,313,828	-		GFF4304	0.36	+0.3
4,313,845	+		GFF4304	0.37	+0.6
4,313,900	+		GFF4304	0.43	+0.8
4,313,903	-		GFF4304	0.43	-1.2
4,313,906	-		GFF4304	0.43	-0.1
4,313,906	-		GFF4304	0.43	-1.2
4,313,906	-		GFF4304	0.43	+0.0
4,313,906	-		GFF4304	0.43	+0.9
4,313,919	+		GFF4304	0.45	+1.0
4,313,927	-		GFF4304	0.46	+0.8
4,313,927	-		GFF4304	0.46	+0.3
4,313,927	-		GFF4304	0.46	+0.1
4,313,927	-		GFF4304	0.46	-1.8
4,313,938	+		GFF4304	0.47	-1.6
4,313,938	+		GFF4304	0.47	+1.2
4,313,938	+		GFF4304	0.47	-1.0
4,313,941	-		GFF4304	0.47	-1.2
4,313,941	-		GFF4304	0.47	+0.1
4,313,946	+		GFF4304	0.47	+0.5
4,313,956	-		GFF4304	0.48	-0.7
4,313,963	+		GFF4304	0.49	-1.2
4,313,971	-		GFF4304	0.50	-0.5
4,313,972	+		GFF4304	0.50	-0.9
4,313,976	-		GFF4304	0.50	+0.4
4,313,991	-		GFF4304	0.52	+0.9
4,313,993	+		GFF4304	0.52	-2.2
4,313,996	-		GFF4304	0.52	-1.3
4,313,996	-		GFF4304	0.52	+0.8
4,313,998	+		GFF4304	0.53	+0.3
4,314,001	-		GFF4304	0.53	-0.6
4,314,003	+		GFF4304	0.53	+0.6
4,314,006	-		GFF4304	0.53	-1.1
4,314,006	-		GFF4304	0.53	-0.2
4,314,006	-		GFF4304	0.53	-0.3
4,314,028	+		GFF4304	0.56	+0.4
4,314,028	+		GFF4304	0.56	-1.1
4,314,033	+		GFF4304	0.56	-3.2
4,314,033	+		GFF4304	0.56	-0.3
4,314,038	-		GFF4304	0.57	-1.3
4,314,041	-		GFF4304	0.57	+0.1
4,314,041	-		GFF4304	0.57	-0.9
4,314,041	-		GFF4304	0.57	-1.5
4,314,080	+		GFF4304	0.61	+0.5
4,314,080	+		GFF4304	0.61	-1.2
4,314,080	+		GFF4304	0.61	-1.2
4,314,080	+		GFF4304	0.61	-0.7
4,314,080	+		GFF4304	0.61	-0.2
4,314,080	+		GFF4304	0.61	-1.2
4,314,080	+		GFF4304	0.61	-1.0
4,314,080	+		GFF4304	0.61	-1.3
4,314,080	+		GFF4304	0.61	-0.2
4,314,080	+		GFF4304	0.61	-0.2
4,314,080	+		GFF4304	0.61	+0.1
4,314,080	+		GFF4304	0.61	-0.2
4,314,088	-		GFF4304	0.61	-0.2
4,314,088	-		GFF4304	0.61	-0.3
4,314,088	-		GFF4304	0.61	-0.6
4,314,088	-		GFF4304	0.61	-0.6
4,314,088	-		GFF4304	0.61	+0.4
4,314,088	-		GFF4304	0.61	-1.7
4,314,088	-		GFF4304	0.61	-0.8
4,314,104	-		GFF4304	0.63	+0.8
4,314,109	-		GFF4304	0.64	-0.7
4,314,116	+		GFF4304	0.64	-0.5
4,314,116	+		GFF4304	0.64	-0.7
4,314,116	+		GFF4304	0.64	-1.8
4,314,117	-		GFF4304	0.64	-2.5
4,314,119	-		GFF4304	0.64	-1.0
4,314,122	+		GFF4304	0.65	-1.8
4,314,124	-		GFF4304	0.65	-0.1
4,314,124	-		GFF4304	0.65	-1.2
4,314,124	-		GFF4304	0.65	-1.6
4,314,124	-		GFF4304	0.65	-0.9
4,314,124	-		GFF4304	0.65	-2.2
4,314,127	+		GFF4304	0.65	-0.7
4,314,144	+		GFF4304	0.67	+0.3
4,314,159	+		GFF4304	0.68	-0.5
4,314,164	+		GFF4304	0.69	+0.8
4,314,165	-		GFF4304	0.69	-0.3
4,314,166	+		GFF4304	0.69	-0.0
4,314,174	-		GFF4304	0.70	+0.3
4,314,174	-		GFF4304	0.70	-0.7
4,314,177	+		GFF4304	0.70	-0.6
4,314,177	+		GFF4304	0.70	-0.5
4,314,182	+		GFF4304	0.71	+0.1
4,314,182	+		GFF4304	0.71	-1.5
4,314,182	+		GFF4304	0.71	-0.9
4,314,182	+		GFF4304	0.71	-1.2
4,314,184	-		GFF4304	0.71	-1.0
4,314,190	-		GFF4304	0.71	-0.0
4,314,190	-		GFF4304	0.71	-0.2
4,314,275	-		GFF4304	0.80	-1.9
4,314,314	+		GFF4304	0.84	+0.3
4,314,314	+		GFF4304	0.84	-1.0
4,314,314	+		GFF4304	0.84	-1.2
4,314,322	-		GFF4304	0.85	-0.3
4,314,322	-		GFF4304	0.85	-1.2
4,314,322	-		GFF4304	0.85	+0.4
4,314,322	-		GFF4304	0.85	-1.3
4,314,322	-		GFF4304	0.85	-0.1
4,314,322	-		GFF4304	0.85	-0.7
4,314,346	+		GFF4304	0.87	+1.4
4,314,346	+		GFF4304	0.87	-0.2
4,314,346	+		GFF4304	0.87	+0.3
4,314,351	+		GFF4304	0.87	+0.3
4,314,354	-		GFF4304	0.88	-1.4
4,314,354	-		GFF4304	0.88	-1.3
4,314,354	-		GFF4304	0.88	-1.0
4,314,359	-		GFF4304	0.88	-0.5
4,314,359	-		GFF4304	0.88	-1.4
4,314,359	-		GFF4304	0.88	-0.6
4,314,364	-		GFF4304	0.89	+1.2
4,314,372	+		GFF4304	0.89	-0.4
4,314,372	+		GFF4304	0.89	-1.1
4,314,372	+		GFF4304	0.89	+0.1
4,314,374	+		GFF4304	0.90	-0.7
4,314,393	-				-0.3
4,314,406	+				-0.8
4,314,416	-				+0.6
4,314,417	+				+0.3
4,314,417	+				-0.7
4,314,423	+				+0.1
4,314,449	-				-1.1
4,314,466	-				+2.0
4,314,466	-				-0.6
4,314,486	+				-1.2
4,314,486	+				-0.2
4,314,487	+				-0.6
4,314,487	+				-0.6
4,314,494	+				-0.2
4,314,494	+				-0.9
4,314,536	+		GFF4305	0.21	-2.2
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4,314,554	+		GFF4305	0.27	+1.1
4,314,554	+		GFF4305	0.27	-2.9
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4,314,562	-		GFF4305	0.30	-0.9
4,314,562	-		GFF4305	0.30	-1.8
4,314,562	-		GFF4305	0.30	-0.3
4,314,562	-		GFF4305	0.30	+1.0
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4,314,562	-		GFF4305	0.30	-1.5
4,314,562	-		GFF4305	0.30	-1.2
4,314,562	-		GFF4305	0.30	-0.6
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4,314,571	+		GFF4305	0.33	-1.3
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4,314,747	+				-1.5
4,314,755	-				-0.9
4,314,777	-				+0.0
4,314,788	+				-1.1
4,314,795	+				-1.3
4,314,796	-				-0.0
4,314,808	+				-0.6
4,314,815	-				-2.0
4,314,815	-				+0.8
4,314,826	+		GFF4306	0.10	+0.1
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4,315,257	-		GFF4306	0.75	-0.7
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4,315,257	-		GFF4306	0.75	-1.0
4,315,257	-		GFF4306	0.75	-1.0
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4,315,297	+		GFF4306	0.82	-1.8
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4,315,371	-				+1.3
4,315,373	+				-1.2
4,315,373	+				-0.8
4,315,391	-				-0.3
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4,315,434	+				+0.3
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4,315,442	-				-0.6
4,315,447	+				-0.6
4,315,455	-				-0.3
4,315,457	+				+1.1
4,315,457	+				-1.6
4,315,457	+				+0.0
4,315,457	+				-2.2
4,315,457	+				-1.3
4,315,457	+				-1.5
4,315,465	-				-1.8
4,315,465	-				+0.7
4,315,465	-				-1.7
4,315,465	-				+0.0
4,315,465	-				-0.6
4,315,465	-				-0.5
4,315,466	+				-0.2