Strain Fitness in Sphingobium sp. HT1-2 around GFF4218

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,234,655	+		GFF4214	0.71	-0.2
4,234,675	-		GFF4214	0.84	+0.4
4,234,675	-		GFF4214	0.84	+0.0
4,234,680	-		GFF4214	0.88	+0.5
4,234,685	-				+0.5
4,234,702	+				-0.9
4,234,711	+				+1.1
4,234,716	+				-0.5
4,234,716	+				-0.9
4,234,716	+				-0.1
4,234,724	-				-1.0
4,234,724	-				-0.5
4,234,724	-				+0.1
4,234,756	+		GFF4215	0.24	+0.4
4,234,764	-		GFF4215	0.32	+0.6
4,234,774	+		GFF4215	0.41	+1.6
4,234,800	+		GFF4215	0.64	-1.2
4,234,800	+		GFF4215	0.64	-0.2
4,234,800	+		GFF4215	0.64	-1.5
4,234,800	+		GFF4215	0.64	+1.1
4,234,807	-		GFF4215	0.70	-0.9
4,234,807	-		GFF4215	0.70	+0.5
4,234,808	-		GFF4215	0.71	-0.9
4,234,808	-		GFF4215	0.71	-1.4
4,234,808	-		GFF4215	0.71	+0.4
4,234,830	+				+1.2
4,234,832	+				-1.0
4,234,832	-				-0.7
4,234,832	-				+0.2
4,234,834	+				+0.8
4,234,839	+				-0.1
4,234,841	-				-0.5
4,234,844	+				-0.6
4,234,855	+				-0.6
4,234,861	+				-0.3
4,234,861	+				-0.0
4,234,863	-				-1.5
4,234,871	+				+0.5
4,234,878	-				-1.1
4,234,879	-				+0.4
4,234,879	-				-1.2
4,234,881	-				-1.0
4,234,883	-				-1.0
4,234,888	-				-1.9
4,234,893	+				+0.7
4,234,896	-				-2.1
4,234,901	+				-0.5
4,234,903	-				+0.5
4,234,908	+				-1.2
4,234,908	+				-0.6
4,234,916	-				+0.3
4,234,928	+				-1.3
4,234,934	+				-0.5
4,234,936	-				-1.0
4,234,936	-				+0.0
4,234,936	-				+0.7
4,234,936	-				-1.7
4,234,936	-				-1.6
4,234,936	-				-0.1
4,234,992	+				-0.3
4,234,992	+				-0.5
4,234,992	+				-0.6
4,234,992	+				-1.2
4,235,000	-				-1.2
4,235,000	-				-0.8
4,235,000	-				-0.6
4,235,000	-				+0.4
4,235,000	-				+0.0
4,235,000	-				-1.3
4,235,000	-				-0.6
4,235,000	-				+0.4
4,235,002	+				-0.6
4,235,010	-				-1.0
4,235,030	-				+0.0
4,235,033	+				-0.1
4,235,041	-				-1.6
4,235,041	-				-1.6
4,235,084	+		GFF4216	0.10	-1.1
4,235,084	+		GFF4216	0.10	-2.5
4,235,084	+		GFF4216	0.10	+1.0
4,235,084	+		GFF4216	0.10	+0.8
4,235,084	+		GFF4216	0.10	+1.3
4,235,084	+		GFF4216	0.10	+1.8
4,235,084	+		GFF4216	0.10	-0.7
4,235,084	+		GFF4216	0.10	-1.3
4,235,084	+		GFF4216	0.10	+0.7
4,235,084	+		GFF4216	0.10	-2.5
4,235,090	+		GFF4216	0.13	-0.7
4,235,092	-		GFF4216	0.14	-0.7
4,235,092	-		GFF4216	0.14	-1.6
4,235,092	-		GFF4216	0.14	-0.5
4,235,092	-		GFF4216	0.14	+0.2
4,235,092	-		GFF4216	0.14	-1.6
4,235,098	+		GFF4216	0.17	-1.0
4,235,098	-		GFF4216	0.17	-0.6
4,235,098	-		GFF4216	0.17	-1.0
4,235,126	+		GFF4216	0.30	-0.9
4,235,145	-		GFF4216	0.39	-0.9
4,235,145	-		GFF4216	0.39	-1.0
4,235,169	-		GFF4216	0.50	-0.7
4,235,193	+		GFF4216	0.62	-0.1
4,235,233	-		GFF4216	0.81	-0.1
4,235,239	+		GFF4216	0.84	-0.9
4,235,266	+				-2.7
4,235,290	+				+0.4
4,235,290	+				+0.2
4,235,290	+				-2.5
4,235,298	-				+0.1
4,235,308	+				+0.4
4,235,308	-				+0.5
4,235,332	-		GFF4217	0.20	-0.3
4,235,333	+		GFF4217	0.21	+1.4
4,235,333	+		GFF4217	0.21	+1.3
4,235,333	+		GFF4217	0.21	-0.6
4,235,334	+		GFF4217	0.21	-0.6
4,235,341	-		GFF4217	0.25	-0.0
4,235,341	-		GFF4217	0.25	-0.0
4,235,341	-		GFF4217	0.25	-0.4
4,235,341	-		GFF4217	0.25	+0.9
4,235,342	-		GFF4217	0.25	+0.4
4,235,343	+		GFF4217	0.26	-1.3
4,235,355	-		GFF4217	0.32	+0.1
4,235,393	+		GFF4217	0.51	+0.2
4,235,545	+				-0.5
4,235,549	-				-1.0
4,235,551	+				-1.1
4,235,559	-				-1.6
4,235,559	-				+0.8
4,235,559	-				-0.6
4,235,559	-				+0.0
4,235,559	-				-1.2
4,235,574	+				-0.5
4,235,574	+				-1.2
4,235,582	-				-0.7
4,235,582	-				-2.3
4,235,582	-				+0.1
4,235,582	-				-1.3
4,235,582	-				-0.2
4,235,582	-				-1.0
4,235,582	-				+1.0
4,235,582	-				-0.7
4,235,600	-				-2.1
4,235,613	+				-1.8
4,235,621	-				-0.7
4,235,621	-				+0.5
4,235,649	+				-1.1
4,235,662	+		GFF4218	0.14	-1.2
4,235,670	-		GFF4218	0.21	+0.6
4,235,677	+		GFF4218	0.26	-1.6
4,235,682	+		GFF4218	0.30	+0.3
4,235,685	-		GFF4218	0.33	+0.5
4,235,691	+		GFF4218	0.37	-0.4
4,235,700	+		GFF4218	0.44	-0.2
4,235,715	-		GFF4218	0.56	+0.2
4,235,758	+				-1.3
4,235,758	+				-0.7
4,235,772	+				+0.8
4,235,773	+				-0.4
4,235,773	+				+0.4
4,235,776	+				-0.9
4,235,780	-				+0.7
4,235,780	-				+0.7
4,235,782	-				+1.0
4,235,782	-				-2.0
4,235,784	+				+0.4
4,235,784	+				-1.0
4,235,784	+				-0.0
4,235,784	+				-1.0
4,235,784	+				-1.1
4,235,784	+				-0.9
4,235,787	-				-1.0
4,235,787	-				-1.2
4,235,787	-				-1.7
4,235,792	-				+0.0
4,235,802	+				-0.6
4,235,802	+				+0.4
4,235,802	+				-2.2
4,235,802	+				-0.3
4,235,802	+				-1.7
4,235,802	+				-1.1
4,235,802	+				+1.1
4,235,802	+				-0.9
4,235,802	+				-1.2
4,235,810	+				+0.2
4,235,810	-				-1.2
4,235,810	-				+0.9
4,235,810	-				-0.4
4,235,810	-				-1.0
4,235,810	-				-0.5
4,235,810	-				-1.2
4,235,810	-				-1.1
4,235,810	-				+0.2
4,235,825	+				-2.2
4,235,828	-				-0.2
4,235,830	+				-1.6
4,235,830	+				-1.5
4,235,830	+				-1.1
4,235,833	-				-0.4
4,235,833	-				-1.1
4,235,838	-				-0.4
4,235,838	-				+0.1
4,235,838	-				-1.0
4,235,838	-				-1.3
4,235,844	+				+0.4
4,235,844	+				-1.1
4,235,844	+				-0.2
4,235,844	+				+0.7
4,235,844	+				-0.6
4,235,844	+				+0.1
4,235,844	+				-0.3
4,235,844	+				-1.5
4,235,844	+				-0.4
4,235,844	+				+0.6
4,235,844	+				+0.5
4,235,852	-				+0.7
4,235,852	-				+0.6
4,235,852	-				-0.0
4,235,852	-				+0.3
4,235,852	-				+0.4
4,235,867	+		GFF4219	0.17	+0.9
4,235,867	+		GFF4219	0.17	+0.4
4,235,867	+		GFF4219	0.17	+0.4
4,235,867	+		GFF4219	0.17	-1.4
4,235,867	+		GFF4219	0.17	-1.6
4,235,867	+		GFF4219	0.17	-0.6
4,235,867	+		GFF4219	0.17	+0.2
4,235,867	+		GFF4219	0.17	-1.6
4,235,867	+		GFF4219	0.17	+1.1
4,235,867	+		GFF4219	0.17	+0.7
4,235,867	+		GFF4219	0.17	+0.0
4,235,867	+		GFF4219	0.17	-1.3
4,235,867	+		GFF4219	0.17	+0.2
4,235,867	+		GFF4219	0.17	+0.1
4,235,867	+		GFF4219	0.17	-2.7
4,235,872	+		GFF4219	0.21	+1.3
4,235,875	-		GFF4219	0.24	+0.2
4,235,875	-		GFF4219	0.24	-0.4
4,235,875	-		GFF4219	0.24	-0.1
4,235,875	-		GFF4219	0.24	+0.4
4,235,875	-		GFF4219	0.24	-2.4
4,235,875	-		GFF4219	0.24	-0.0
4,235,875	-		GFF4219	0.24	-0.5
4,235,875	-		GFF4219	0.24	+0.2
4,235,875	-		GFF4219	0.24	+0.4
4,235,875	-		GFF4219	0.24	-0.1
4,235,875	-		GFF4219	0.24	-0.9
4,235,875	-		GFF4219	0.24	-2.3
4,235,875	-		GFF4219	0.24	-0.6
4,235,875	-		GFF4219	0.24	+0.5
4,235,875	-		GFF4219	0.24	-1.3
4,235,875	-		GFF4219	0.24	-1.0
4,235,877	+		GFF4219	0.25	+0.5
4,235,880	-		GFF4219	0.28	-1.6
4,235,880	-		GFF4219	0.28	-0.5
4,235,885	-		GFF4219	0.32	-0.9
4,235,900	-		GFF4219	0.46	+0.3
4,235,911	+		GFF4219	0.55	-1.2
4,235,911	+		GFF4219	0.55	+0.5
4,235,911	+		GFF4219	0.55	-0.1
4,235,911	+		GFF4219	0.55	+1.4
4,235,911	+		GFF4219	0.55	-0.2
4,235,911	+		GFF4219	0.55	-0.1
4,235,911	+		GFF4219	0.55	-1.5
4,235,919	-		GFF4219	0.62	-0.2
4,235,919	-		GFF4219	0.62	-0.3
4,235,919	-		GFF4219	0.62	+0.0
4,235,919	-		GFF4219	0.62	-1.1
4,235,919	-		GFF4219	0.62	-0.1
4,235,944	-		GFF4219	0.84	+0.1
4,235,997	-				+0.2
4,235,997	-				-0.3
4,235,999	+				+0.9
4,235,999	+				-0.8
4,236,002	-				-0.9
4,236,007	-				+1.4
4,236,022	-				-1.7
4,236,032	-				+0.9
4,236,049	-				+0.2
4,236,052	+				-1.4
4,236,073	+				-1.5
4,236,084	+				-0.5
4,236,087	+				-0.6
4,236,087	-				-1.1
4,236,092	-				+0.9
4,236,105	+				-0.5
4,236,115	+				-0.3
4,236,118	-				-0.1
4,236,118	-				-0.8
4,236,123	-				-0.8
4,236,123	-				-0.9
4,236,140	+				+1.1
4,236,140	+				+0.3
4,236,141	+				-1.7
4,236,141	+				-0.9
4,236,149	-				-1.8
4,236,149	-				+1.9
4,236,171	-				-0.7
4,236,173	-				+0.5
4,236,189	+				-1.1
4,236,189	+				-1.5
4,236,196	+				+0.8
4,236,196	+				-0.9
4,236,196	+				-0.8
4,236,196	+				-1.1
4,236,196	+				-0.3
4,236,196	+				+0.4
4,236,196	+				+0.8
4,236,196	+				-0.2
4,236,197	-				-0.5
4,236,197	-				-1.6
4,236,204	-				-1.8
4,236,204	-				+0.1
4,236,204	-				-0.1
4,236,204	-				-0.1
4,236,204	-				-1.1
4,236,204	-				-0.8
4,236,215	-				-1.4
4,236,217	+				-2.0
4,236,242	+				-0.2
4,236,252	+				-1.6
4,236,260	-				-0.3
4,236,260	-				-0.1
4,236,334	+				-0.9
4,236,365	+				-1.0
4,236,373	-				-1.2
4,236,388	+				-1.1
4,236,396	+				+0.0
4,236,396	+				-0.6
4,236,396	+				-1.2
4,236,413	+				+0.5
4,236,422	+				-0.6
4,236,422	+				-1.4
4,236,422	+				+0.9
4,236,422	+				-0.5
4,236,430	+				-0.6
4,236,430	-				+0.1
4,236,430	-				-1.0
4,236,438	+				-1.3
4,236,446	-		GFF4220	0.10	+0.4
4,236,448	+		GFF4220	0.10	-0.9
4,236,449	-		GFF4220	0.10	+0.7
4,236,455	+		GFF4220	0.11	-1.1
4,236,456	+		GFF4220	0.11	+0.7
4,236,456	-		GFF4220	0.11	-1.8
4,236,458	-		GFF4220	0.11	-1.3
4,236,473	+		GFF4220	0.13	-0.1
4,236,510	-		GFF4220	0.16	+0.0
4,236,510	-		GFF4220	0.16	-2.3
4,236,526	-		GFF4220	0.17	-1.0
4,236,528	+		GFF4220	0.18	+0.2
4,236,528	+		GFF4220	0.18	-0.9
4,236,536	-		GFF4220	0.18	-0.9
4,236,550	-		GFF4220	0.20	-1.3
4,236,562	+		GFF4220	0.21	-1.1
4,236,586	+		GFF4220	0.23	-2.2
4,236,594	-		GFF4220	0.24	-0.9
4,236,594	-		GFF4220	0.24	-1.6
4,236,596	-		GFF4220	0.24	-0.8
4,236,658	+		GFF4220	0.30	-2.1
4,236,660	+		GFF4220	0.30	+0.6
4,236,663	-		GFF4220	0.30	-1.2
4,236,671	-		GFF4220	0.31	+0.4
4,236,673	+		GFF4220	0.31	-0.4
4,236,673	+		GFF4220	0.31	-0.8
4,236,673	+		GFF4220	0.31	-0.9
4,236,684	+		GFF4220	0.32	-0.9
4,236,691	-		GFF4220	0.33	-1.1
4,236,709	+		GFF4220	0.34	-1.8
4,236,727	+		GFF4220	0.36	-1.4
4,236,732	+		GFF4220	0.36	-0.9
4,236,740	+		GFF4220	0.37	-2.2
4,236,750	+		GFF4220	0.38	-1.0
4,236,752	-		GFF4220	0.38	-0.9
4,236,754	+		GFF4220	0.38	-0.3
4,236,754	+		GFF4220	0.38	-0.4
4,236,762	-		GFF4220	0.39	-1.9
4,236,765	+		GFF4220	0.39	+0.2