Strain Fitness in Sphingobium sp. HT1-2 around GFF4209

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,229,437	+				+0.3
4,229,467	+				-0.4
4,229,485	+		GFF4207	0.11	-2.2
4,229,498	+		GFF4207	0.13	-1.3
4,229,506	-		GFF4207	0.14	-1.3
4,229,506	-		GFF4207	0.14	-1.4
4,229,516	-		GFF4207	0.16	+1.0
4,229,535	+		GFF4207	0.18	-0.3
4,229,535	+		GFF4207	0.18	-0.7
4,229,535	+		GFF4207	0.18	-1.4
4,229,540	+		GFF4207	0.19	-1.4
4,229,540	+		GFF4207	0.19	-0.8
4,229,543	-		GFF4207	0.20	-2.8
4,229,543	-		GFF4207	0.20	-0.0
4,229,543	-		GFF4207	0.20	-0.1
4,229,543	-		GFF4207	0.20	+0.4
4,229,581	+		GFF4207	0.26	-0.5
4,229,581	+		GFF4207	0.26	+0.6
4,229,581	+		GFF4207	0.26	-1.1
4,229,581	+		GFF4207	0.26	-0.1
4,229,589	-		GFF4207	0.27	-1.5
4,229,589	-		GFF4207	0.27	+0.2
4,229,598	+		GFF4207	0.28	+1.7
4,229,601	-		GFF4207	0.29	+0.2
4,229,603	+		GFF4207	0.29	-0.8
4,229,605	+		GFF4207	0.29	-0.9
4,229,605	+		GFF4207	0.29	-0.0
4,229,605	+		GFF4207	0.29	+1.2
4,229,605	+		GFF4207	0.29	-0.7
4,229,613	-		GFF4207	0.31	-1.3
4,229,613	-		GFF4207	0.31	-0.5
4,229,613	-		GFF4207	0.31	+1.0
4,229,613	-		GFF4207	0.31	-2.6
4,229,613	-		GFF4207	0.31	-1.3
4,229,613	-		GFF4207	0.31	-0.0
4,229,613	-		GFF4207	0.31	-0.6
4,229,613	-		GFF4207	0.31	+0.3
4,229,613	-		GFF4207	0.31	+0.3
4,229,613	-		GFF4207	0.31	+0.3
4,229,639	-		GFF4207	0.35	-0.8
4,229,639	-		GFF4207	0.35	+0.8
4,229,653	+		GFF4207	0.37	-0.7
4,229,660	-		GFF4207	0.38	-0.5
4,229,660	-		GFF4207	0.38	+0.0
4,229,667	+		GFF4207	0.39	-2.0
4,229,669	+		GFF4207	0.39	-1.4
4,229,669	+		GFF4207	0.39	-0.6
4,229,705	+		GFF4207	0.45	+0.9
4,229,739	-		GFF4207	0.50	-1.3
4,229,749	-		GFF4207	0.52	+1.6
4,229,759	+		GFF4207	0.53	-0.2
4,229,759	+		GFF4207	0.53	-1.3
4,229,760	+		GFF4207	0.53	-0.6
4,229,766	+		GFF4207	0.54	-0.9
4,229,766	+		GFF4207	0.54	+0.4
4,229,766	+		GFF4207	0.54	-1.0
4,229,766	+		GFF4207	0.54	-1.0
4,229,774	-		GFF4207	0.56	-0.6
4,229,774	-		GFF4207	0.56	+0.2
4,229,774	-		GFF4207	0.56	-2.4
4,229,774	-		GFF4207	0.56	-1.3
4,229,785	+		GFF4207	0.57	-0.4
4,229,785	-		GFF4207	0.57	+0.6
4,229,785	-		GFF4207	0.57	+0.7
4,229,785	-		GFF4207	0.57	-0.7
4,229,795	+		GFF4207	0.59	-1.8
4,229,795	+		GFF4207	0.59	-1.9
4,229,795	+		GFF4207	0.59	-1.4
4,229,795	+		GFF4207	0.59	-1.1
4,229,798	-		GFF4207	0.59	-0.9
4,229,803	-		GFF4207	0.60	+1.3
4,229,803	-		GFF4207	0.60	+1.6
4,229,803	-		GFF4207	0.60	-0.7
4,229,803	-		GFF4207	0.60	-1.8
4,229,803	-		GFF4207	0.60	+0.4
4,229,803	-		GFF4207	0.60	-1.1
4,229,803	-		GFF4207	0.60	+0.7
4,229,810	+		GFF4207	0.61	-0.7
4,229,810	+		GFF4207	0.61	-1.1
4,229,810	+		GFF4207	0.61	-0.3
4,229,818	-		GFF4207	0.62	-0.6
4,229,818	-		GFF4207	0.62	+0.5
4,229,823	-		GFF4207	0.63	-1.1
4,229,864	-		GFF4207	0.69	-1.9
4,229,879	+		GFF4207	0.72	-0.5
4,229,879	+		GFF4207	0.72	-1.4
4,229,879	+		GFF4207	0.72	+1.0
4,229,879	+		GFF4207	0.72	-0.0
4,229,887	-		GFF4207	0.73	-0.7
4,229,887	-		GFF4207	0.73	-1.1
4,229,887	-		GFF4207	0.73	+0.1
4,229,887	-		GFF4207	0.73	-1.7
4,229,887	-		GFF4207	0.73	+0.4
4,229,889	+		GFF4207	0.73	-0.5
4,229,889	+		GFF4207	0.73	+0.0
4,229,889	-		GFF4207	0.73	-1.1
4,229,900	+		GFF4207	0.75	-0.0
4,229,900	+		GFF4207	0.75	-0.5
4,229,900	+		GFF4207	0.75	-1.0
4,229,900	+		GFF4207	0.75	-1.2
4,229,902	-		GFF4207	0.75	-0.3
4,229,903	+		GFF4207	0.76	+0.4
4,229,908	-		GFF4207	0.76	+0.6
4,229,908	-		GFF4207	0.76	+0.1
4,229,908	-		GFF4207	0.76	+0.6
4,229,908	-		GFF4207	0.76	-1.0
4,229,908	-		GFF4207	0.76	+1.8
4,229,910	+		GFF4207	0.77	+0.4
4,229,918	-		GFF4207	0.78	+0.7
4,229,947	+		GFF4207	0.82	+0.4
4,229,954	-		GFF4207	0.83	+0.1
4,229,955	-		GFF4207	0.84	+0.8
4,229,961	-		GFF4207	0.84	-0.6
4,229,977	+		GFF4207	0.87	-1.2
4,229,992	+		GFF4207	0.89	+0.3
4,230,004	+				+0.2
4,230,006	+				-0.4
4,230,012	-				-0.9
4,230,012	-				-0.4
4,230,014	-				+0.3
4,230,041	-				-2.2
4,230,046	+				-0.5
4,230,078	+				-1.5
4,230,113	+				-0.9
4,230,113	+				-0.2
4,230,113	+				+0.2
4,230,113	+				-1.0
4,230,113	+				-1.0
4,230,121	-				+0.2
4,230,121	-				-1.0
4,230,121	-				+1.2
4,230,121	-				-2.0
4,230,121	-				-0.7
4,230,121	-				-0.9
4,230,146	+				-0.7
4,230,146	+				+0.8
4,230,146	+				+0.5
4,230,146	+				+0.1
4,230,154	-				-1.2
4,230,154	-				-0.6
4,230,154	-				+0.1
4,230,154	-				+0.2
4,230,181	+				-0.8
4,230,181	+				-1.4
4,230,181	+				-0.1
4,230,188	-				-0.4
4,230,212	-				-0.7
4,230,229	+				-1.1
4,230,272	+		GFF4208	0.16	+0.0
4,230,287	-		GFF4208	0.23	+0.3
4,230,292	+		GFF4208	0.25	-0.6
4,230,292	+		GFF4208	0.25	+0.3
4,230,292	+		GFF4208	0.25	-0.0
4,230,295	+		GFF4208	0.26	+0.3
4,230,300	-		GFF4208	0.29	-1.7
4,230,315	+		GFF4208	0.36	-1.2
4,230,315	+		GFF4208	0.36	-2.4
4,230,320	+		GFF4208	0.38	+0.4
4,230,323	-		GFF4208	0.39	+1.1
4,230,323	-		GFF4208	0.39	+0.4
4,230,323	-		GFF4208	0.39	+0.5
4,230,323	-		GFF4208	0.39	+0.3
4,230,323	-		GFF4208	0.39	-1.3
4,230,328	-		GFF4208	0.42	+0.2
4,230,342	+		GFF4208	0.48	-0.1
4,230,350	-		GFF4208	0.52	-0.9
4,230,351	-		GFF4208	0.52	-0.7
4,230,384	+		GFF4208	0.67	+0.3
4,230,384	+		GFF4208	0.67	-1.1
4,230,384	+		GFF4208	0.67	+0.3
4,230,384	+		GFF4208	0.67	-0.9
4,230,384	+		GFF4208	0.67	+0.2
4,230,384	+		GFF4208	0.67	-1.2
4,230,385	-		GFF4208	0.68	+1.5
4,230,392	-		GFF4208	0.71	-0.6
4,230,392	-		GFF4208	0.71	-0.8
4,230,392	-		GFF4208	0.71	+0.2
4,230,392	-		GFF4208	0.71	+0.5
4,230,392	-		GFF4208	0.71	-1.0
4,230,397	-		GFF4208	0.73	-0.6
4,230,399	-		GFF4208	0.74	-0.6
4,230,419	-		GFF4208	0.83	-1.8
4,230,421	-		GFF4208	0.84	-0.4
4,230,421	-		GFF4208	0.84	-0.8
4,230,476	+				+0.6
4,230,476	+				-0.8
4,230,484	-				+0.8
4,230,500	-				-1.0
4,230,504	+				-1.0
4,230,522	-		GFF4209	0.12	-0.7
4,230,533	-		GFF4209	0.14	+0.6
4,230,559	-		GFF4209	0.18	+1.1
4,230,613	+		GFF4209	0.26	+0.1
4,230,630	+		GFF4209	0.28	-0.2
4,230,630	+		GFF4209	0.28	-2.2
4,230,630	+		GFF4209	0.28	-0.5
4,230,630	+		GFF4209	0.28	-0.4
4,230,638	-		GFF4209	0.29	-0.3
4,230,638	-		GFF4209	0.29	-1.0
4,230,638	-		GFF4209	0.29	-1.0
4,230,638	-		GFF4209	0.29	-0.1
4,230,676	+		GFF4209	0.35	+0.2
4,230,693	+		GFF4209	0.37	-1.0
4,230,693	+		GFF4209	0.37	-0.1
4,230,703	-		GFF4209	0.39	+0.8
4,230,714	+		GFF4209	0.40	+1.5
4,230,722	-		GFF4209	0.42	-0.4
4,230,736	-		GFF4209	0.44	-1.1
4,230,811	+		GFF4209	0.55	-1.1
4,230,811	+		GFF4209	0.55	-0.8
4,230,819	-		GFF4209	0.56	-1.8
4,230,860	+		GFF4209	0.62	-0.6
4,230,863	-		GFF4209	0.62	-0.2
4,230,865	+		GFF4209	0.63	-2.0
4,230,865	+		GFF4209	0.63	+0.1
4,230,868	+		GFF4209	0.63	-1.3
4,230,873	-		GFF4209	0.64	+0.4
4,230,876	-		GFF4209	0.64	-0.8
4,230,876	-		GFF4209	0.64	+0.5
4,230,899	+		GFF4209	0.68	+0.5
4,230,899	+		GFF4209	0.68	-0.7
4,230,899	+		GFF4209	0.68	-1.4
4,230,907	-		GFF4209	0.69	-0.8
4,230,907	-		GFF4209	0.69	+0.4
4,230,909	+		GFF4209	0.69	-0.6
4,230,912	-		GFF4209	0.69	-2.2
4,230,913	+		GFF4209	0.70	-0.4
4,230,913	+		GFF4209	0.70	-0.3
4,230,918	+		GFF4209	0.70	+0.2
4,230,921	-		GFF4209	0.71	+0.6
4,230,927	-		GFF4209	0.72	-0.5
4,230,937	-		GFF4209	0.73	-0.1
4,230,941	+		GFF4209	0.74	+1.4
4,230,949	-		GFF4209	0.75	-2.7
4,230,955	+		GFF4209	0.76	-0.4
4,230,961	-		GFF4209	0.77	-0.6
4,230,978	-		GFF4209	0.79	+0.2
4,230,998	+		GFF4209	0.82	+0.8
4,231,037	+		GFF4209	0.88	-2.0
4,231,052	+				+0.1
4,231,053	+				-1.3
4,231,053	+				-0.5
4,231,053	+				-1.9
4,231,053	+				-0.5
4,231,058	+				+0.1
4,231,061	-				-2.1
4,231,061	-				+0.1
4,231,061	-				-1.6
4,231,061	-				-0.9
4,231,061	-				+1.0
4,231,061	-				-0.1
4,231,083	+				+0.9
4,231,096	-				+0.3
4,231,097	+				-1.2
4,231,115	-				-2.3
4,231,134	-				+0.3
4,231,173	-				+0.4
4,231,213	+				-0.6
4,231,221	-				-0.3
4,231,221	-				-0.6
4,231,221	-				+0.4
4,231,237	+				+0.3
4,231,237	+				+0.5
4,231,312	-				+0.5
4,231,317	+				-2.2
4,231,317	+				-1.0
4,231,325	-				+0.8
4,231,325	-				-0.9
4,231,341	+				-1.8
4,231,349	-				+0.8
4,231,354	-				-0.7
4,231,384	+				-2.2
4,231,385	+				-0.9
4,231,393	-				-0.1
4,231,393	-				+0.7
4,231,394	-				-0.9
4,231,405	+				+0.2
4,231,411	-				-0.1
4,231,412	+				+0.1
4,231,412	+				-1.3
4,231,412	+				-0.2
4,231,434	-				-1.8
4,231,468	-				-1.0
4,231,478	-				-1.4
4,231,486	+				-0.9
4,231,489	-				-0.9
4,231,489	-				+0.5
4,231,494	-				+0.4
4,231,494	-				-1.5
4,231,501	-				+0.7
4,231,503	+				-0.3
4,231,508	+				-0.4
4,231,511	-				-0.3
4,231,518	+				-2.5
4,231,518	+				-0.5
4,231,526	-				-0.2
4,231,526	-				-0.4
4,231,551	+				+0.8
4,231,564	-				-0.1
4,231,585	+				-0.1
4,231,629	+				-1.5
4,231,637	+				+0.3
4,231,647	+		GFF4210	0.11	+0.4
4,231,654	+		GFF4210	0.12	-0.6
4,231,664	+		GFF4210	0.13	-0.5
4,231,702	+		GFF4210	0.18	-0.2
4,231,702	+		GFF4210	0.18	-0.2
4,231,710	+		GFF4210	0.19	-1.7
4,231,710	-		GFF4210	0.19	+1.4
4,231,720	+		GFF4210	0.20	+1.2
4,231,720	+		GFF4210	0.20	+0.8
4,231,720	+		GFF4210	0.20	-1.0
4,231,727	+		GFF4210	0.21	-0.6
4,231,727	+		GFF4210	0.21	-0.0
4,231,727	+		GFF4210	0.21	-0.1
4,231,727	+		GFF4210	0.21	-0.3
4,231,727	+		GFF4210	0.21	+0.7
4,231,727	+		GFF4210	0.21	+0.5
4,231,728	-		GFF4210	0.21	-1.3
4,231,728	-		GFF4210	0.21	-1.8
4,231,728	-		GFF4210	0.21	+1.3
4,231,733	-		GFF4210	0.21	-0.2
4,231,735	-		GFF4210	0.22	-1.1
4,231,735	-		GFF4210	0.22	-1.7
4,231,735	-		GFF4210	0.22	+1.1
4,231,735	-		GFF4210	0.22	+0.4
4,231,735	-		GFF4210	0.22	+0.5
4,231,735	-		GFF4210	0.22	-1.1
4,231,737	+		GFF4210	0.22	-2.0
4,231,739	+		GFF4210	0.22	+1.0
4,231,739	+		GFF4210	0.22	-0.2
4,231,747	-		GFF4210	0.23	+0.4
4,231,835	+		GFF4210	0.34	-1.3
4,231,837	-		GFF4210	0.34	+0.7
4,231,860	+		GFF4210	0.37	+0.1
4,231,868	-		GFF4210	0.38	-0.1
4,231,875	+		GFF4210	0.38	-0.2
4,231,875	+		GFF4210	0.38	-1.2
4,231,890	+		GFF4210	0.40	+0.1
4,231,898	-		GFF4210	0.41	-1.8
4,231,915	+		GFF4210	0.43	+0.1
4,231,924	+		GFF4210	0.44	-1.2
4,231,926	+		GFF4210	0.44	-0.6
4,231,932	-		GFF4210	0.45	-1.7
4,231,934	+		GFF4210	0.45	-0.9
4,231,961	+		GFF4210	0.49	-0.5
4,231,970	+		GFF4210	0.50	+0.8
4,231,984	-		GFF4210	0.51	-0.5
4,231,989	+		GFF4210	0.52	-1.1
4,231,997	-		GFF4210	0.53	-0.7
4,231,997	-		GFF4210	0.53	-0.7
4,231,997	-		GFF4210	0.53	+1.8
4,232,006	-		GFF4210	0.54	-1.4
4,232,032	+		GFF4210	0.57	-0.4
4,232,033	-		GFF4210	0.57	+0.3
4,232,034	-		GFF4210	0.57	-1.1
4,232,038	-		GFF4210	0.58	+0.7
4,232,051	+		GFF4210	0.59	-1.5
4,232,059	-		GFF4210	0.60	-1.1
4,232,066	-		GFF4210	0.61	-0.3
4,232,077	+		GFF4210	0.62	-0.7
4,232,077	+		GFF4210	0.62	+0.5
4,232,077	+		GFF4210	0.62	-0.6
4,232,077	+		GFF4210	0.62	-1.5
4,232,077	+		GFF4210	0.62	+0.4
4,232,077	+		GFF4210	0.62	+1.3
4,232,085	-		GFF4210	0.63	-1.4
4,232,085	-		GFF4210	0.63	-0.4
4,232,095	+		GFF4210	0.65	+0.5
4,232,095	+		GFF4210	0.65	-0.3
4,232,095	+		GFF4210	0.65	-0.7
4,232,103	-		GFF4210	0.66	-0.6