Strain Fitness in Sphingobium sp. HT1-2 around GFF4158

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,181,772	-				-1.2
4,181,803	+				-0.6
4,181,811	-				+0.2
4,181,813	+				-0.8
4,181,818	+				-1.3
4,181,821	-				-1.8
4,181,830	+				-1.7
4,181,854	+		GFF4156	0.15	-0.8
4,181,862	+		GFF4156	0.18	+0.7
4,181,862	+		GFF4156	0.18	+0.6
4,181,862	+		GFF4156	0.18	-1.2
4,181,862	-		GFF4156	0.18	-1.1
4,181,891	-		GFF4156	0.29	+0.5
4,181,901	+		GFF4156	0.33	+1.2
4,181,903	+		GFF4156	0.33	-0.2
4,181,913	+		GFF4156	0.37	+0.5
4,181,923	+		GFF4156	0.41	-0.1
4,181,937	+		GFF4156	0.46	-1.9
4,181,937	+		GFF4156	0.46	-1.2
4,181,937	+		GFF4156	0.46	-0.2
4,181,937	+		GFF4156	0.46	-0.8
4,181,938	-		GFF4156	0.47	-0.3
4,181,938	-		GFF4156	0.47	+0.2
4,181,938	-		GFF4156	0.47	-0.2
4,181,938	-		GFF4156	0.47	-0.2
4,181,943	-		GFF4156	0.49	-0.4
4,181,945	-		GFF4156	0.49	-0.7
4,181,945	-		GFF4156	0.49	-0.4
4,181,945	-		GFF4156	0.49	+0.4
4,181,947	+		GFF4156	0.50	-1.0
4,182,000	-		GFF4156	0.70	-0.3
4,182,001	+		GFF4156	0.71	+0.4
4,182,001	+		GFF4156	0.71	-1.0
4,182,028	-		GFF4156	0.81	-0.8
4,182,079	+				-1.2
4,182,079	+				-2.2
4,182,079	+				-1.1
4,182,079	+				-0.0
4,182,079	+				-1.6
4,182,079	+				+0.6
4,182,079	+				-2.0
4,182,079	+				-0.1
4,182,079	+				+0.3
4,182,079	+				-1.3
4,182,079	+				-0.7
4,182,087	-				+0.8
4,182,087	-				+0.7
4,182,087	-				-0.4
4,182,087	-				-1.0
4,182,087	-				-0.4
4,182,087	-				+0.6
4,182,087	-				+0.1
4,182,087	-				-0.7
4,182,087	-				-0.3
4,182,087	-				+0.1
4,182,087	-				-1.8
4,182,087	-				+1.2
4,182,087	-				-0.1
4,182,092	-				+1.0
4,182,096	+				-1.3
4,182,096	+				+0.0
4,182,096	+				+1.0
4,182,096	+				+0.2
4,182,096	+				+0.5
4,182,101	+				-1.0
4,182,101	+				-0.8
4,182,101	+				-1.3
4,182,101	+				-0.1
4,182,101	+				+0.1
4,182,104	-				-0.2
4,182,104	-				-2.3
4,182,104	-				+1.9
4,182,104	-				-1.0
4,182,104	-				-1.3
4,182,104	-				-1.0
4,182,104	-				+0.9
4,182,104	-				-1.0
4,182,104	-				+0.9
4,182,104	-				-0.3
4,182,104	-				-2.2
4,182,104	-				-1.3
4,182,109	-				+0.2
4,182,109	-				-1.2
4,182,109	-				+0.1
4,182,143	+				+1.3
4,182,143	+				-0.2
4,182,162	+		GFF4157	0.11	-1.9
4,182,162	+		GFF4157	0.11	+0.7
4,182,162	+		GFF4157	0.11	+0.1
4,182,162	+		GFF4157	0.11	-0.6
4,182,162	+		GFF4157	0.11	-0.1
4,182,162	+		GFF4157	0.11	-0.6
4,182,162	+		GFF4157	0.11	-1.4
4,182,162	+		GFF4157	0.11	-0.1
4,182,162	+		GFF4157	0.11	-0.2
4,182,170	-		GFF4157	0.12	-1.3
4,182,170	-		GFF4157	0.12	-0.2
4,182,170	-		GFF4157	0.12	+1.0
4,182,170	-		GFF4157	0.12	-0.3
4,182,170	-		GFF4157	0.12	-1.6
4,182,172	-		GFF4157	0.12	-0.4
4,182,184	+		GFF4157	0.14	-1.7
4,182,185	+		GFF4157	0.14	-0.7
4,182,186	+		GFF4157	0.14	-1.8
4,182,192	-		GFF4157	0.15	-1.4
4,182,204	-		GFF4157	0.17	+0.2
4,182,241	+		GFF4157	0.22	+0.0
4,182,246	+		GFF4157	0.22	+0.3
4,182,254	-		GFF4157	0.24	-1.5
4,182,254	-		GFF4157	0.24	-0.7
4,182,281	-		GFF4157	0.27	+0.2
4,182,293	+		GFF4157	0.29	+0.0
4,182,301	-		GFF4157	0.30	-0.2
4,182,323	+		GFF4157	0.33	-0.7
4,182,328	+		GFF4157	0.34	+1.0
4,182,336	-		GFF4157	0.35	-0.4
4,182,350	+		GFF4157	0.37	-1.8
4,182,350	+		GFF4157	0.37	-0.4
4,182,357	+		GFF4157	0.38	-2.1
4,182,357	+		GFF4157	0.38	-0.2
4,182,357	+		GFF4157	0.38	-1.2
4,182,358	-		GFF4157	0.38	-1.0
4,182,358	-		GFF4157	0.38	-1.0
4,182,358	-		GFF4157	0.38	-1.8
4,182,364	+		GFF4157	0.39	-0.4
4,182,365	-		GFF4157	0.39	+0.1
4,182,365	-		GFF4157	0.39	-2.2
4,182,394	+		GFF4157	0.43	-1.1
4,182,402	-		GFF4157	0.44	-0.8
4,182,402	-		GFF4157	0.44	+0.1
4,182,409	-		GFF4157	0.45	-1.1
4,182,409	-		GFF4157	0.45	+0.1
4,182,409	-		GFF4157	0.45	-1.2
4,182,414	-		GFF4157	0.45	-0.6
4,182,415	-		GFF4157	0.45	-0.2
4,182,415	-		GFF4157	0.45	-0.4
4,182,415	-		GFF4157	0.45	-0.9
4,182,417	+		GFF4157	0.46	+0.0
4,182,417	+		GFF4157	0.46	-1.2
4,182,417	+		GFF4157	0.46	-1.3
4,182,422	+		GFF4157	0.46	+1.0
4,182,425	-		GFF4157	0.47	-1.4
4,182,430	-		GFF4157	0.47	-0.6
4,182,430	-		GFF4157	0.47	-1.6
4,182,496	+		GFF4157	0.56	-1.0
4,182,500	+		GFF4157	0.57	+0.6
4,182,508	-		GFF4157	0.58	+0.8
4,182,513	+		GFF4157	0.59	+0.1
4,182,521	-		GFF4157	0.60	-1.2
4,182,579	-		GFF4157	0.68	-1.5
4,182,605	+		GFF4157	0.71	-2.0
4,182,606	-		GFF4157	0.71	-0.2
4,182,612	+		GFF4157	0.72	+1.0
4,182,614	+		GFF4157	0.73	+0.6
4,182,614	+		GFF4157	0.73	-2.4
4,182,614	+		GFF4157	0.73	-0.8
4,182,617	+		GFF4157	0.73	+0.5
4,182,617	+		GFF4157	0.73	-0.7
4,182,617	+		GFF4157	0.73	-0.8
4,182,619	+		GFF4157	0.73	-0.4
4,182,619	+		GFF4157	0.73	-1.6
4,182,619	+		GFF4157	0.73	-0.9
4,182,619	+		GFF4157	0.73	-0.4
4,182,619	+		GFF4157	0.73	-0.5
4,182,619	+		GFF4157	0.73	+0.7
4,182,619	+		GFF4157	0.73	-0.3
4,182,619	+		GFF4157	0.73	-0.3
4,182,619	+		GFF4157	0.73	-1.6
4,182,622	-		GFF4157	0.74	-0.2
4,182,624	+		GFF4157	0.74	-1.1
4,182,625	-		GFF4157	0.74	-1.3
4,182,625	-		GFF4157	0.74	+0.5
4,182,625	-		GFF4157	0.74	+1.1
4,182,627	-		GFF4157	0.74	+1.3
4,182,627	-		GFF4157	0.74	-1.4
4,182,627	-		GFF4157	0.74	+0.3
4,182,627	-		GFF4157	0.74	-0.6
4,182,627	-		GFF4157	0.74	+1.1
4,182,627	-		GFF4157	0.74	-0.1
4,182,627	-		GFF4157	0.74	-0.1
4,182,632	-		GFF4157	0.75	+0.2
4,182,634	+		GFF4157	0.75	-0.8
4,182,634	+		GFF4157	0.75	+0.6
4,182,634	+		GFF4157	0.75	+1.1
4,182,636	+		GFF4157	0.76	-1.3
4,182,642	-		GFF4157	0.76	-1.4
4,182,642	-		GFF4157	0.76	-0.7
4,182,642	-		GFF4157	0.76	+0.0
4,182,642	-		GFF4157	0.76	-1.6
4,182,642	-		GFF4157	0.76	+0.6
4,182,644	-		GFF4157	0.77	+1.0
4,182,648	-		GFF4157	0.77	-0.6
4,182,706	-		GFF4157	0.85	+1.0
4,182,706	-		GFF4157	0.85	-1.2
4,182,769	+				+0.3
4,182,785	-				-0.6
4,182,794	+				+0.3
4,182,830	-		GFF4158	0.14	+0.2
4,182,838	-		GFF4158	0.15	-1.2
4,182,838	-		GFF4158	0.15	+0.8
4,182,838	-		GFF4158	0.15	-0.2
4,182,838	-		GFF4158	0.15	-1.0
4,182,867	-		GFF4158	0.22	+0.1
4,182,878	+		GFF4158	0.25	-1.3
4,182,878	+		GFF4158	0.25	-1.3
4,182,883	+		GFF4158	0.26	-0.8
4,182,886	-		GFF4158	0.27	-0.7
4,182,907	+		GFF4158	0.32	-0.2
4,182,907	+		GFF4158	0.32	+0.2
4,182,912	+		GFF4158	0.33	+1.1
4,182,912	+		GFF4158	0.33	+0.2
4,182,915	-		GFF4158	0.34	-1.9
4,182,920	-		GFF4158	0.35	+0.3
4,182,920	-		GFF4158	0.35	+0.4
4,182,920	-		GFF4158	0.35	-1.7
4,182,920	-		GFF4158	0.35	+0.3
4,182,920	-		GFF4158	0.35	-0.7
4,182,933	+		GFF4158	0.38	-0.1
4,182,933	+		GFF4158	0.38	-0.0
4,182,933	+		GFF4158	0.38	+0.1
4,182,933	+		GFF4158	0.38	-0.0
4,182,933	+		GFF4158	0.38	+1.2
4,182,933	+		GFF4158	0.38	-1.0
4,182,935	+		GFF4158	0.38	-0.3
4,182,935	-		GFF4158	0.38	+0.9
4,182,938	-		GFF4158	0.39	-1.0
4,182,941	-		GFF4158	0.40	-1.3
4,182,941	-		GFF4158	0.40	-2.2
4,182,941	-		GFF4158	0.40	-1.1
4,182,941	-		GFF4158	0.40	+0.8
4,182,941	-		GFF4158	0.40	+0.6
4,182,941	-		GFF4158	0.40	+0.1
4,182,948	-		GFF4158	0.41	+0.1
4,182,963	+		GFF4158	0.45	-0.7
4,182,963	+		GFF4158	0.45	+1.2
4,182,963	+		GFF4158	0.45	-0.8
4,182,966	-		GFF4158	0.46	-1.1
4,182,971	-		GFF4158	0.47	-0.2
4,182,971	-		GFF4158	0.47	-1.4
4,182,971	-		GFF4158	0.47	+1.1
4,182,986	-		GFF4158	0.50	+0.4
4,183,006	-		GFF4158	0.55	-0.6
4,183,014	+		GFF4158	0.57	-0.4
4,183,014	+		GFF4158	0.57	-2.0
4,183,028	+		GFF4158	0.60	-0.1
4,183,064	-		GFF4158	0.69	-2.3
4,183,064	-		GFF4158	0.69	-2.0
4,183,075	-		GFF4158	0.71	-0.1
4,183,081	+		GFF4158	0.73	-1.2
4,183,081	+		GFF4158	0.73	-1.0
4,183,087	+		GFF4158	0.74	+0.8
4,183,093	+		GFF4158	0.75	-2.0
4,183,096	-		GFF4158	0.76	+0.4
4,183,101	-		GFF4158	0.77	-0.1
4,183,121	-		GFF4158	0.82	+1.0
4,183,133	+		GFF4158	0.85	-0.8
4,183,141	-		GFF4158	0.87	-1.6
4,183,141	-		GFF4158	0.87	-0.5
4,183,151	-		GFF4158	0.89	-0.2
4,183,151	-		GFF4158	0.89	-0.2
4,183,162	+				-1.2
4,183,170	-				+0.6
4,183,171	+				+0.0
4,183,179	-				+0.6
4,183,186	-				+0.1
4,183,192	+				-2.2
4,183,192	-				+0.4
4,183,200	-				-1.6
4,183,257	+				-3.0
4,183,257	+				+0.5
4,183,260	-				+0.2
4,183,265	-		GFF4159	0.10	-0.9
4,183,310	+		GFF4159	0.17	-1.8
4,183,318	+		GFF4159	0.18	-1.2
4,183,318	-		GFF4159	0.18	+1.2
4,183,320	+		GFF4159	0.19	+0.5
4,183,328	+		GFF4159	0.20	-1.3
4,183,328	+		GFF4159	0.20	-0.5
4,183,352	-		GFF4159	0.24	-0.9
4,183,360	-		GFF4159	0.25	+0.2
4,183,369	-		GFF4159	0.26	+0.1
4,183,379	+		GFF4159	0.28	+0.8
4,183,379	+		GFF4159	0.28	-0.9
4,183,379	+		GFF4159	0.28	-1.0
4,183,381	+		GFF4159	0.28	+0.5
4,183,381	+		GFF4159	0.28	-0.9
4,183,381	+		GFF4159	0.28	-0.2
4,183,389	-		GFF4159	0.29	-1.2
4,183,389	-		GFF4159	0.29	-1.5
4,183,389	-		GFF4159	0.29	-0.2
4,183,396	+		GFF4159	0.31	+0.0
4,183,399	-		GFF4159	0.31	-0.7
4,183,404	-		GFF4159	0.32	-1.0
4,183,417	+		GFF4159	0.34	-2.6
4,183,419	+		GFF4159	0.34	-0.7
4,183,419	+		GFF4159	0.34	+0.9
4,183,419	+		GFF4159	0.34	-1.3
4,183,419	+		GFF4159	0.34	-0.1
4,183,419	+		GFF4159	0.34	-0.2
4,183,419	+		GFF4159	0.34	-0.7
4,183,427	+		GFF4159	0.35	-1.5
4,183,427	-		GFF4159	0.35	-2.0
4,183,427	-		GFF4159	0.35	+0.5
4,183,427	-		GFF4159	0.35	+0.4
4,183,427	-		GFF4159	0.35	-1.4
4,183,427	-		GFF4159	0.35	+0.8
4,183,427	-		GFF4159	0.35	-1.2
4,183,427	-		GFF4159	0.35	-1.2
4,183,427	-		GFF4159	0.35	+0.0
4,183,427	-		GFF4159	0.35	-0.7
4,183,435	-		GFF4159	0.37	+0.5
4,183,440	-		GFF4159	0.37	-0.1
4,183,460	-		GFF4159	0.41	+0.9
4,183,460	-		GFF4159	0.41	-0.3
4,183,466	+		GFF4159	0.41	-0.5
4,183,466	+		GFF4159	0.41	-1.0
4,183,469	-		GFF4159	0.42	-0.5
4,183,474	-		GFF4159	0.43	+0.9
4,183,480	-		GFF4159	0.44	-0.3
4,183,482	+		GFF4159	0.44	-0.6
4,183,503	+		GFF4159	0.47	-0.7
4,183,519	+		GFF4159	0.50	-1.1
4,183,543	+		GFF4159	0.54	-0.2
4,183,543	+		GFF4159	0.54	-0.8
4,183,551	-		GFF4159	0.55	-1.9
4,183,553	+		GFF4159	0.55	-0.3
4,183,573	-		GFF4159	0.58	+0.5
4,183,593	+		GFF4159	0.61	-1.1
4,183,595	-		GFF4159	0.62	-1.1
4,183,600	-		GFF4159	0.62	-0.5
4,183,608	+		GFF4159	0.64	+0.5
4,183,609	-		GFF4159	0.64	-0.5
4,183,640	+		GFF4159	0.69	+0.1
4,183,640	+		GFF4159	0.69	-1.3
4,183,640	+		GFF4159	0.69	-1.5
4,183,645	+		GFF4159	0.69	+0.2
4,183,648	-		GFF4159	0.70	+0.6
4,183,676	+		GFF4159	0.74	+0.4
4,183,676	+		GFF4159	0.74	-0.5
4,183,676	+		GFF4159	0.74	-0.7
4,183,684	-		GFF4159	0.76	+0.4
4,183,684	-		GFF4159	0.76	-0.6
4,183,684	-		GFF4159	0.76	+0.9
4,183,698	+		GFF4159	0.78	-0.5
4,183,698	+		GFF4159	0.78	-0.7
4,183,699	+		GFF4159	0.78	-1.4
4,183,699	+		GFF4159	0.78	-2.7
4,183,699	+		GFF4159	0.78	-2.7
4,183,699	+		GFF4159	0.78	+0.4
4,183,707	-		GFF4159	0.79	-0.7
4,183,707	-		GFF4159	0.79	-0.5
4,183,707	-		GFF4159	0.79	+0.2
4,183,707	-		GFF4159	0.79	+1.0
4,183,707	-		GFF4159	0.79	-0.3
4,183,730	+		GFF4159	0.83	+0.8
4,183,730	+		GFF4159	0.83	+1.0
4,183,730	+		GFF4159	0.83	-1.2
4,183,730	+		GFF4159	0.83	+0.2
4,183,743	+		GFF4159	0.85	-0.4
4,183,775	-		GFF4159	0.90	-1.9
4,183,781	-				-1.1
4,183,787	+				-0.3
4,183,806	-				-0.1
4,183,806	-				+0.0
4,183,853	-				+0.3
4,183,855	+				+0.2
4,183,855	+				-1.5
4,183,855	+				+0.4
4,183,863	-				+1.1
4,183,863	-				-2.8
4,183,912	-				-1.2
4,183,916	+				-0.5
4,183,923	+				+0.2
4,183,953	+				+0.8
4,183,961	-				+0.7
4,183,961	-				-1.1
4,183,963	+		GFF4160	0.10	-0.3
4,183,963	+		GFF4160	0.10	+0.7
4,183,963	+		GFF4160	0.10	+0.8
4,183,971	-		GFF4160	0.11	+0.1
4,183,971	-		GFF4160	0.11	+0.9
4,183,971	-		GFF4160	0.11	-2.1
4,183,971	-		GFF4160	0.11	+0.7
4,183,971	-		GFF4160	0.11	-1.4
4,183,978	-		GFF4160	0.12	+0.6
4,183,988	+		GFF4160	0.14	+0.6
4,183,993	+		GFF4160	0.15	+0.6
4,184,021	+		GFF4160	0.19	-0.5
4,184,043	+		GFF4160	0.23	-0.6
4,184,088	-		GFF4160	0.30	-0.6
4,184,096	-		GFF4160	0.31	+0.3
4,184,098	+		GFF4160	0.31	-1.5
4,184,098	+		GFF4160	0.31	+0.8
4,184,105	+		GFF4160	0.32	-0.7
4,184,106	-		GFF4160	0.32	+0.0
4,184,113	-		GFF4160	0.33	-0.7
4,184,129	+		GFF4160	0.36	+0.0
4,184,132	-		GFF4160	0.36	-0.4
4,184,137	-		GFF4160	0.37	-2.3
4,184,159	-		GFF4160	0.41	+0.5
4,184,162	+		GFF4160	0.41	+0.1
4,184,162	+		GFF4160	0.41	-1.5
4,184,165	-		GFF4160	0.42	-0.8
4,184,167	+		GFF4160	0.42	-0.8
4,184,167	+		GFF4160	0.42	-1.0
4,184,170	-		GFF4160	0.42	-0.7
4,184,175	-		GFF4160	0.43	-0.2
4,184,177	+		GFF4160	0.44	+0.4
4,184,177	+		GFF4160	0.44	-0.3
4,184,177	+		GFF4160	0.44	-1.5
4,184,185	-		GFF4160	0.45	+1.2
4,184,191	+		GFF4160	0.46	-1.0