Strain Fitness in Sphingobium sp. HT1-2 around GFF4132

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,155,872	-		GFF4130	0.57	-0.4
4,155,872	-		GFF4130	0.57	-1.0
4,155,894	-		GFF4130	0.60	+0.3
4,155,909	-		GFF4130	0.62	-0.7
4,155,948	+		GFF4130	0.67	-0.4
4,155,962	-		GFF4130	0.69	+1.2
4,156,080	-		GFF4130	0.84	-1.1
4,156,095	-		GFF4130	0.86	+0.8
4,156,095	-		GFF4130	0.86	+1.7
4,156,100	-		GFF4130	0.87	-0.1
4,156,114	+		GFF4130	0.88	-0.6
4,156,192	-				-0.6
4,156,234	-				+0.6
4,156,234	-				+1.0
4,156,318	+		GFF4131	0.18	+0.9
4,156,376	+		GFF4131	0.27	-0.3
4,156,386	+		GFF4131	0.29	+0.2
4,156,394	-		GFF4131	0.30	-0.7
4,156,405	+		GFF4131	0.32	-1.7
4,156,408	-		GFF4131	0.32	-2.1
4,156,421	-		GFF4131	0.34	-0.1
4,156,440	-		GFF4131	0.37	-0.8
4,156,463	-		GFF4131	0.41	-0.3
4,156,487	+		GFF4131	0.45	-1.0
4,156,487	+		GFF4131	0.45	-0.7
4,156,492	+		GFF4131	0.45	+0.9
4,156,493	+		GFF4131	0.45	+0.2
4,156,500	-		GFF4131	0.47	+0.4
4,156,526	+		GFF4131	0.51	-0.4
4,156,597	+		GFF4131	0.62	-0.1
4,156,597	+		GFF4131	0.62	+1.7
4,156,597	+		GFF4131	0.62	-0.8
4,156,597	+		GFF4131	0.62	+0.2
4,156,597	+		GFF4131	0.62	-0.1
4,156,600	-		GFF4131	0.62	-1.4
4,156,602	+		GFF4131	0.62	+0.6
4,156,602	+		GFF4131	0.62	-1.3
4,156,605	-		GFF4131	0.63	-1.2
4,156,610	-		GFF4131	0.64	-1.7
4,156,628	-		GFF4131	0.67	-0.1
4,156,640	+		GFF4131	0.68	-0.4
4,156,654	-		GFF4131	0.71	-0.4
4,156,692	-		GFF4131	0.76	+0.2
4,156,705	-		GFF4131	0.79	-0.5
4,156,705	-		GFF4131	0.79	+1.3
4,156,763	-		GFF4131	0.88	-0.7
4,156,814	+				-1.1
4,156,819	+				-1.5
4,156,822	-				-1.1
4,156,854	-				+0.0
4,156,943	-				-1.4
4,156,944	-				+0.3
4,156,987	+				-0.1
4,157,008	+				-0.8
4,157,061	-		GFF4132	0.12	-1.6
4,157,102	+		GFF4132	0.14	+0.6
4,157,115	-		GFF4132	0.15	+1.0
4,157,159	+		GFF4132	0.17	-0.1
4,157,167	-		GFF4132	0.18	+0.5
4,157,184	-		GFF4132	0.19	-0.4
4,157,226	-		GFF4132	0.21	+1.0
4,157,250	+		GFF4132	0.22	+0.6
4,157,251	-		GFF4132	0.22	-1.0
4,157,251	-		GFF4132	0.22	-0.1
4,157,297	-		GFF4132	0.25	-1.5
4,157,342	+		GFF4132	0.27	-0.1
4,157,344	-		GFF4132	0.27	-0.6
4,157,432	-		GFF4132	0.32	+0.7
4,157,434	-		GFF4132	0.32	-2.1
4,157,554	-		GFF4132	0.39	-0.9
4,157,564	+		GFF4132	0.39	-1.4
4,157,564	+		GFF4132	0.39	-0.7
4,157,572	-		GFF4132	0.40	-0.6
4,157,572	-		GFF4132	0.40	+0.6
4,157,572	-		GFF4132	0.40	-1.0
4,157,572	-		GFF4132	0.40	+0.3
4,157,586	+		GFF4132	0.40	-0.9
4,157,589	-		GFF4132	0.41	-0.9
4,157,589	-		GFF4132	0.41	+0.9
4,157,591	+		GFF4132	0.41	-1.0
4,157,594	-		GFF4132	0.41	-0.1
4,157,594	-		GFF4132	0.41	-0.6
4,157,596	+		GFF4132	0.41	-0.6
4,157,604	-		GFF4132	0.41	-0.7
4,157,604	-		GFF4132	0.41	-1.1
4,157,604	-		GFF4132	0.41	-1.0
4,157,604	-		GFF4132	0.41	-0.5
4,157,604	-		GFF4132	0.41	-0.8
4,157,604	-		GFF4132	0.41	-0.6
4,157,624	+		GFF4132	0.42	-0.1
4,157,632	+		GFF4132	0.43	-0.1
4,157,660	+		GFF4132	0.44	-0.7
4,157,671	+		GFF4132	0.45	+0.6
4,157,702	+		GFF4132	0.47	-0.6
4,157,710	-		GFF4132	0.47	+0.3
4,157,766	-		GFF4132	0.50	+0.0
4,157,766	-		GFF4132	0.50	-1.4
4,157,766	-		GFF4132	0.50	-0.5
4,157,768	+		GFF4132	0.50	-1.3
4,157,773	+		GFF4132	0.50	+0.6
4,157,776	-		GFF4132	0.51	+2.2
4,157,778	+		GFF4132	0.51	+0.0
4,157,778	+		GFF4132	0.51	+0.4
4,157,781	-		GFF4132	0.51	-0.4
4,157,817	-		GFF4132	0.53	-0.8
4,157,853	+		GFF4132	0.55	+2.4
4,157,856	-		GFF4132	0.55	-0.0
4,157,887	-		GFF4132	0.57	+0.2
4,157,899	+		GFF4132	0.57	-0.5
4,157,904	+		GFF4132	0.58	-0.9
4,157,904	+		GFF4132	0.58	-1.1
4,157,907	-		GFF4132	0.58	+1.1
4,157,907	-		GFF4132	0.58	+0.6
4,157,919	+		GFF4132	0.58	-1.1
4,157,919	+		GFF4132	0.58	-1.5
4,157,924	+		GFF4132	0.59	-0.4
4,157,927	-		GFF4132	0.59	-0.6
4,157,927	-		GFF4132	0.59	-2.1
4,157,927	-		GFF4132	0.59	+1.2
4,157,927	-		GFF4132	0.59	-1.0
4,157,927	-		GFF4132	0.59	-0.8
4,157,932	-		GFF4132	0.59	-0.4
4,157,932	-		GFF4132	0.59	+1.2
4,157,935	-		GFF4132	0.59	-0.0
4,157,966	+		GFF4132	0.61	+0.2
4,157,971	+		GFF4132	0.61	+0.6
4,157,984	-		GFF4132	0.62	+0.6
4,157,984	-		GFF4132	0.62	+0.5
4,158,018	+		GFF4132	0.64	+0.6
4,158,019	+		GFF4132	0.64	+0.1
4,158,027	-		GFF4132	0.64	-0.7
4,158,056	-		GFF4132	0.66	+0.7
4,158,102	-		GFF4132	0.68	+0.1
4,158,108	-		GFF4132	0.69	+0.2
4,158,122	+		GFF4132	0.69	-1.7
4,158,137	+		GFF4132	0.70	+0.1
4,158,137	+		GFF4132	0.70	-1.5
4,158,137	+		GFF4132	0.70	-0.6
4,158,145	-		GFF4132	0.71	+0.3
4,158,145	-		GFF4132	0.71	-0.9
4,158,145	-		GFF4132	0.71	-0.7
4,158,147	-		GFF4132	0.71	+0.3
4,158,199	+		GFF4132	0.73	-0.7
4,158,199	+		GFF4132	0.73	+1.3
4,158,199	+		GFF4132	0.73	-0.7
4,158,207	-		GFF4132	0.74	-1.6
4,158,207	-		GFF4132	0.74	-0.4
4,158,217	-		GFF4132	0.74	-0.7
4,158,254	+		GFF4132	0.76	-1.1
4,158,278	+		GFF4132	0.78	+1.2
4,158,278	+		GFF4132	0.78	-0.6
4,158,286	-		GFF4132	0.78	+0.7
4,158,286	-		GFF4132	0.78	-0.4
4,158,299	+		GFF4132	0.79	+0.4
4,158,314	+		GFF4132	0.80	+0.3
4,158,328	+		GFF4132	0.80	-0.8
4,158,328	+		GFF4132	0.80	-0.4
4,158,421	-		GFF4132	0.85	-1.6
4,158,525	+				-0.7
4,158,526	+				-1.0
4,158,530	+				-1.0
4,158,533	-				+1.8
4,158,534	-				-0.1
4,158,534	-				+1.0
4,158,538	-				+0.9
4,158,566	-				-0.1
4,158,572	-				+0.8
4,158,580	-				+0.2
4,158,580	-				-1.1
4,158,586	+				-1.0
4,158,588	+				+0.5
4,158,596	-				-0.2
4,158,610	+				-0.6
4,158,612	+				+0.8
4,158,628	-				+0.6
4,158,635	+				+0.2
4,158,644	-				-1.3
4,158,658	-				-0.6
4,158,671	+				-0.6
4,158,679	-				-0.4
4,158,756	+				-0.6
4,158,758	-				-1.1
4,158,764	-				-1.0
4,158,824	-				-0.6
4,158,828	+				-1.0
4,158,828	+				+0.2
4,158,829	-				-0.8
4,158,836	-				-0.7
4,158,836	-				+0.4
4,158,836	-				+1.0
4,158,836	-				+0.0
4,158,841	-				-0.3
4,158,918	-		GFF4133	0.11	-0.2
4,158,948	+		GFF4133	0.13	-1.2
4,158,970	+		GFF4133	0.15	+0.3
4,158,970	+		GFF4133	0.15	-1.4
4,158,978	-		GFF4133	0.15	-1.4
4,158,981	+		GFF4133	0.16	-0.9
4,158,983	-		GFF4133	0.16	+0.9
4,158,983	-		GFF4133	0.16	+1.2
4,158,983	-		GFF4133	0.16	-0.6
4,158,983	-		GFF4133	0.16	-0.4
4,158,995	-		GFF4133	0.17	+1.4
4,159,013	-		GFF4133	0.18	+0.5
4,159,020	+		GFF4133	0.19	-1.0
4,159,069	+		GFF4133	0.23	-0.4
4,159,071	-		GFF4133	0.23	-0.8
4,159,072	-		GFF4133	0.23	-1.3
4,159,083	+		GFF4133	0.24	+0.2
4,159,083	+		GFF4133	0.24	-1.1
4,159,088	+		GFF4133	0.24	-0.1
4,159,091	-		GFF4133	0.24	-0.4
4,159,093	+		GFF4133	0.24	+0.3
4,159,098	+		GFF4133	0.25	-0.4
4,159,103	+		GFF4133	0.25	+0.8
4,159,153	+		GFF4133	0.29	+1.2
4,159,206	+		GFF4133	0.33	+0.2
4,159,246	+		GFF4133	0.36	-1.3
4,159,254	-		GFF4133	0.37	-0.3
4,159,273	-		GFF4133	0.38	-0.8
4,159,273	-		GFF4133	0.38	-1.5
4,159,296	+		GFF4133	0.40	-1.5
4,159,362	-		GFF4133	0.45	-0.4
4,159,367	+		GFF4133	0.46	-0.4
4,159,372	-		GFF4133	0.46	+0.6
4,159,375	-		GFF4133	0.46	-1.1
4,159,380	-		GFF4133	0.47	+1.0
4,159,394	-		GFF4133	0.48	-0.7
4,159,395	-		GFF4133	0.48	-0.4
4,159,404	-		GFF4133	0.49	-0.4
4,159,408	+		GFF4133	0.49	+0.8
4,159,408	-		GFF4133	0.49	+0.9
4,159,410	+		GFF4133	0.49	+0.0
4,159,444	+		GFF4133	0.52	+1.1
4,159,448	+		GFF4133	0.52	-1.1
4,159,456	-		GFF4133	0.53	-2.0
4,159,486	+		GFF4133	0.55	-0.6
4,159,486	-		GFF4133	0.55	-0.8
4,159,494	-		GFF4133	0.56	-0.1
4,159,525	+		GFF4133	0.58	+0.3
4,159,562	-		GFF4133	0.61	-0.8
4,159,686	+		GFF4133	0.70	+1.7