Strain Fitness in Sphingobium sp. HT1-2 around GFF4116

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,135,945	-				-0.5
4,135,963	-				-1.7
4,135,989	-		GFF4114	0.18	-0.7
4,136,003	+		GFF4114	0.31	+0.1
4,136,011	-		GFF4114	0.38	-0.4
4,136,028	-		GFF4114	0.53	-0.4
4,136,028	-		GFF4114	0.53	+0.1
4,136,041	+		GFF4114	0.64	-1.1
4,136,044	-		GFF4114	0.67	+0.2
4,136,075	+				-1.5
4,136,082	-				-1.0
4,136,087	+				-0.7
4,136,087	+				-0.5
4,136,101	-				-1.4
4,136,103	+				-1.5
4,136,103	+				-0.4
4,136,103	+				-0.5
4,136,103	+				+0.8
4,136,103	+				+1.3
4,136,103	+				+0.3
4,136,103	+				+0.0
4,136,106	-				+1.8
4,136,108	+				-0.0
4,136,108	+				+0.2
4,136,108	+				-0.5
4,136,111	-				+0.3
4,136,111	-				-1.8
4,136,111	-				-0.3
4,136,111	-				-1.7
4,136,111	-				-0.5
4,136,114	+				+0.1
4,136,114	+				+0.6
4,136,116	-				+0.7
4,136,116	-				-1.5
4,136,117	-				-1.9
4,136,117	-				+0.2
4,136,122	-				+1.1
4,136,152	-		GFF4115	0.13	-0.9
4,136,154	+		GFF4115	0.14	-0.4
4,136,161	+		GFF4115	0.15	-1.6
4,136,203	+		GFF4115	0.22	+0.5
4,136,203	+		GFF4115	0.22	+0.2
4,136,203	+		GFF4115	0.22	+0.5
4,136,203	+		GFF4115	0.22	-1.4
4,136,203	-		GFF4115	0.22	-0.8
4,136,211	-		GFF4115	0.24	-0.5
4,136,211	-		GFF4115	0.24	-1.8
4,136,211	-		GFF4115	0.24	-1.6
4,136,222	-		GFF4115	0.26	+0.6
4,136,250	-		GFF4115	0.31	-0.9
4,136,251	+		GFF4115	0.31	-1.0
4,136,262	+		GFF4115	0.33	-0.9
4,136,281	+		GFF4115	0.36	-1.1
4,136,281	+		GFF4115	0.36	-0.4
4,136,284	-		GFF4115	0.37	-0.7
4,136,296	-		GFF4115	0.39	+1.0
4,136,309	-		GFF4115	0.41	+0.5
4,136,328	-		GFF4115	0.45	+0.7
4,136,328	-		GFF4115	0.45	-0.8
4,136,342	+		GFF4115	0.47	-2.1
4,136,350	-		GFF4115	0.49	-1.0
4,136,359	+		GFF4115	0.50	-0.4
4,136,371	+		GFF4115	0.53	+1.0
4,136,379	-		GFF4115	0.54	-1.0
4,136,379	-		GFF4115	0.54	-1.0
4,136,379	-		GFF4115	0.54	+0.7
4,136,384	-		GFF4115	0.55	-1.7
4,136,386	+		GFF4115	0.55	+0.6
4,136,394	-		GFF4115	0.57	-0.4
4,136,426	+		GFF4115	0.62	-1.0
4,136,434	-		GFF4115	0.64	-0.8
4,136,439	-		GFF4115	0.65	-1.2
4,136,440	-		GFF4115	0.65	-0.3
4,136,440	-		GFF4115	0.65	-0.4
4,136,471	+		GFF4115	0.70	-0.5
4,136,471	+		GFF4115	0.70	-0.5
4,136,471	+		GFF4115	0.70	-0.4
4,136,471	+		GFF4115	0.70	-0.3
4,136,478	-		GFF4115	0.72	+1.6
4,136,478	-		GFF4115	0.72	+1.5
4,136,479	-		GFF4115	0.72	-0.0
4,136,479	-		GFF4115	0.72	-0.8
4,136,479	-		GFF4115	0.72	-1.0
4,136,479	-		GFF4115	0.72	-0.7
4,136,479	-		GFF4115	0.72	-0.6
4,136,479	-		GFF4115	0.72	-0.5
4,136,479	-		GFF4115	0.72	+0.0
4,136,479	-		GFF4115	0.72	+0.4
4,136,481	+		GFF4115	0.72	+0.4
4,136,495	+		GFF4115	0.75	-1.5
4,136,495	-		GFF4115	0.75	+0.6
4,136,500	+		GFF4115	0.76	-0.6
4,136,508	-		GFF4115	0.77	-2.5
4,136,508	-		GFF4115	0.77	-0.4
4,136,512	+		GFF4115	0.78	+1.1
4,136,514	+		GFF4115	0.78	+0.1
4,136,584	+				-0.1
4,136,591	+				-0.5
4,136,599	-				+0.6
4,136,605	+				-0.2
4,136,656	+				+0.1
4,136,657	-				-0.6
4,136,659	+				+0.0
4,136,659	-				+1.0
4,136,668	-				-0.4
4,136,697	+				-1.5
4,136,703	+		GFF4116	0.11	-0.1
4,136,703	-		GFF4116	0.11	+1.0
4,136,705	+		GFF4116	0.12	+0.0
4,136,707	+		GFF4116	0.12	-1.0
4,136,715	-		GFF4116	0.13	+1.1
4,136,728	+		GFF4116	0.16	-0.6
4,136,728	+		GFF4116	0.16	+0.6
4,136,728	+		GFF4116	0.16	+1.6
4,136,749	+		GFF4116	0.20	-0.3
4,136,786	+		GFF4116	0.28	-1.4
4,136,859	+		GFF4116	0.42	-0.8
4,136,859	+		GFF4116	0.42	-2.2
4,136,872	-		GFF4116	0.45	+0.3
4,136,874	-		GFF4116	0.45	+1.0
4,136,882	-		GFF4116	0.47	-1.0
4,136,888	+		GFF4116	0.48	-0.0
4,136,893	+		GFF4116	0.49	+0.9
4,136,893	+		GFF4116	0.49	+0.2
4,136,896	-		GFF4116	0.49	-1.0
4,136,921	+		GFF4116	0.54	-0.4
4,136,926	+		GFF4116	0.55	-0.4
4,136,941	-		GFF4116	0.58	-1.2
4,136,950	-		GFF4116	0.60	-0.0
4,136,961	+		GFF4116	0.62	-0.8
4,136,961	+		GFF4116	0.62	-1.5
4,136,961	+		GFF4116	0.62	+1.6
4,136,961	+		GFF4116	0.62	-2.3
4,136,961	+		GFF4116	0.62	+1.1
4,136,969	-		GFF4116	0.64	+1.1
4,136,969	-		GFF4116	0.64	-0.4
4,136,969	-		GFF4116	0.64	-1.2
4,136,981	+		GFF4116	0.66	+0.4
4,136,983	+		GFF4116	0.67	-2.5
4,136,989	-		GFF4116	0.68	+0.8
4,137,010	+		GFF4116	0.72	-0.5
4,137,035	+		GFF4116	0.77	-1.4
4,137,040	+		GFF4116	0.78	-1.1
4,137,041	-		GFF4116	0.78	-1.0
4,137,043	-		GFF4116	0.79	-0.3
4,137,043	-		GFF4116	0.79	+0.1
4,137,043	-		GFF4116	0.79	-1.0
4,137,043	-		GFF4116	0.79	+0.5
4,137,055	+		GFF4116	0.81	-0.4
4,137,063	-		GFF4116	0.83	-0.2
4,137,063	-		GFF4116	0.83	-2.0
4,137,074	+		GFF4116	0.85	-1.0
4,137,077	-		GFF4116	0.85	+0.7
4,137,080	+		GFF4116	0.86	-0.4
4,137,082	-		GFF4116	0.86	+0.0
4,137,088	+		GFF4116	0.88	-2.0
4,137,106	+				+1.5
4,137,145	+				-0.7
4,137,171	+				-0.4
4,137,214	+				-1.4
4,137,214	+				-0.8
4,137,214	+				-0.4
4,137,222	-				+0.5
4,137,222	-				-1.9
4,137,222	-				-0.8
4,137,222	-				+0.3
4,137,222	-				-2.1
4,137,222	-				-1.2
4,137,222	-				-1.3
4,137,222	-				-1.3
4,137,222	-				-1.2
4,137,222	-				+0.3
4,137,225	+				+0.3
4,137,240	+				-0.7
4,137,248	-				+0.3
4,137,287	-		GFF4117	0.11	+0.4
4,137,338	-		GFF4117	0.18	-0.4
4,137,341	+		GFF4117	0.19	+0.2
4,137,343	+		GFF4117	0.19	-0.9
4,137,346	+		GFF4117	0.19	-1.8
4,137,366	+		GFF4117	0.22	+0.7
4,137,366	+		GFF4117	0.22	+0.2
4,137,366	+		GFF4117	0.22	-0.5
4,137,374	-		GFF4117	0.23	-0.8
4,137,374	-		GFF4117	0.23	+0.1
4,137,374	-		GFF4117	0.23	-0.8
4,137,374	-		GFF4117	0.23	-1.7
4,137,393	-		GFF4117	0.26	-0.0
4,137,412	+		GFF4117	0.28	-0.8
4,137,442	-		GFF4117	0.32	-0.7
4,137,451	+		GFF4117	0.33	+1.5
4,137,459	-		GFF4117	0.34	+0.0
4,137,471	+		GFF4117	0.36	+0.2
4,137,494	+		GFF4117	0.39	-0.2
4,137,494	+		GFF4117	0.39	+0.2
4,137,502	-		GFF4117	0.40	-0.2
4,137,565	+		GFF4117	0.49	+0.9
4,137,573	-		GFF4117	0.50	-1.1
4,137,581	-		GFF4117	0.51	+0.0
4,137,581	-		GFF4117	0.51	+0.5
4,137,600	+		GFF4117	0.53	-0.2
4,137,608	-		GFF4117	0.54	-1.3
4,137,610	+		GFF4117	0.55	-0.1
4,137,612	-		GFF4117	0.55	-1.0
4,137,612	-		GFF4117	0.55	-1.4
4,137,612	-		GFF4117	0.55	-1.5
4,137,613	-		GFF4117	0.55	-0.4
4,137,618	-		GFF4117	0.56	-0.4
4,137,618	-		GFF4117	0.56	+0.9
4,137,618	-		GFF4117	0.56	+1.0
4,137,626	+		GFF4117	0.57	+0.1
4,137,641	+		GFF4117	0.59	-1.7
4,137,641	+		GFF4117	0.59	-0.8
4,137,649	-		GFF4117	0.60	+0.5
4,137,655	+		GFF4117	0.61	+1.5
4,137,655	+		GFF4117	0.61	-0.8
4,137,655	+		GFF4117	0.61	-1.9
4,137,655	+		GFF4117	0.61	+0.3
4,137,655	+		GFF4117	0.61	-0.1
4,137,663	-		GFF4117	0.62	-1.3
4,137,663	-		GFF4117	0.62	-1.0
4,137,663	-		GFF4117	0.62	-0.1
4,137,663	-		GFF4117	0.62	+0.7
4,137,663	-		GFF4117	0.62	-0.9
4,137,663	-		GFF4117	0.62	-1.4
4,137,663	-		GFF4117	0.62	+1.2
4,137,668	-		GFF4117	0.62	-0.6
4,137,673	-		GFF4117	0.63	-0.2
4,137,678	+		GFF4117	0.64	-0.5
4,137,678	+		GFF4117	0.64	-0.6
4,137,686	-		GFF4117	0.65	-0.3
4,137,686	-		GFF4117	0.65	-1.3
4,137,686	-		GFF4117	0.65	-1.2
4,137,701	-		GFF4117	0.67	-1.4
4,137,704	+		GFF4117	0.67	+1.0
4,137,704	+		GFF4117	0.67	-0.2
4,137,704	+		GFF4117	0.67	+0.5
4,137,704	+		GFF4117	0.67	-1.0
4,137,704	+		GFF4117	0.67	-0.5
4,137,709	+		GFF4117	0.68	+0.3
4,137,712	-		GFF4117	0.68	-0.9
4,137,712	-		GFF4117	0.68	-0.4
4,137,712	-		GFF4117	0.68	-0.3
4,137,717	-		GFF4117	0.69	+0.2
4,137,729	+		GFF4117	0.71	-0.9
4,137,730	+		GFF4117	0.71	-1.7
4,137,737	-		GFF4117	0.72	-2.6
4,137,738	-		GFF4117	0.72	-1.5
4,137,758	-		GFF4117	0.75	-0.7
4,137,762	+		GFF4117	0.75	+0.0
4,137,762	+		GFF4117	0.75	+1.1
4,137,770	-		GFF4117	0.76	-0.8
4,137,770	-		GFF4117	0.76	+0.0
4,137,770	-		GFF4117	0.76	-1.6
4,137,770	-		GFF4117	0.76	-0.7
4,137,770	-		GFF4117	0.76	+0.5
4,137,806	+		GFF4117	0.81	-1.2
4,137,806	+		GFF4117	0.81	+0.0
4,137,859	-		GFF4117	0.88	+0.5
4,137,866	+		GFF4117	0.89	+1.0
4,137,881	+				+0.9
4,137,881	+				-1.2
4,137,881	+				+0.6
4,137,883	+				-0.3
4,137,889	-				-1.5
4,137,889	-				+0.8
4,137,889	-				-0.5
4,137,889	-				+0.2
4,137,889	-				-0.6
4,137,889	-				-0.7
4,137,899	-				-0.9
4,137,914	+				-0.2
4,137,925	+				-0.2
4,137,925	+				-1.0
4,137,947	+				+0.2
4,137,949	-				-0.1
4,137,949	-				-0.1
4,137,950	-				-0.5
4,137,952	+				-0.2
4,137,952	+				-0.1
4,137,961	+				-0.1
4,137,971	+				-0.8
4,137,979	-				+0.3
4,137,986	+				+1.3
4,137,992	-				+0.0
4,137,992	-				-1.0
4,137,992	-				-0.4
4,137,992	-				-1.7
4,138,006	+				-0.7
4,138,013	+				-1.0
4,138,013	+				-0.2
4,138,013	+				-1.1
4,138,013	+				-0.8
4,138,013	+				+0.1
4,138,014	-				-0.3
4,138,019	+				-0.7
4,138,021	-				-1.4
4,138,021	-				-0.9
4,138,021	-				-0.5
4,138,021	-				+0.8
4,138,027	-				-0.4
4,138,027	-				+1.2
4,138,032	-				-0.4
4,138,045	-				-1.1
4,138,055	-				+1.3
4,138,056	+				-1.1
4,138,056	+				+0.9
4,138,056	+				-1.1
4,138,056	+				+0.5
4,138,056	+				-0.9
4,138,056	+				-1.4
4,138,056	+				-0.0
4,138,056	+				-2.0
4,138,056	-				-1.1
4,138,064	-				+0.2
4,138,064	-				-0.3
4,138,064	-				+0.0
4,138,064	-				-0.5
4,138,064	-				-1.9
4,138,064	-				+0.3
4,138,064	-				-0.3
4,138,064	-				-0.5
4,138,073	+				+0.1
4,138,074	+				-0.9
4,138,082	-				-0.8
4,138,082	-				+0.5
4,138,082	-				-1.8
4,138,082	-				-1.9
4,138,089	+				-0.8
4,138,114	+				+0.2
4,138,117	-				+0.2
4,138,138	+				+0.6
4,138,138	+				+0.2
4,138,138	+				-1.8
4,138,138	+				+0.3
4,138,141	-				+0.5
4,138,146	-				-0.7
4,138,146	-				+1.1