Strain Fitness in Sphingobium sp. HT1-2 around GFF4036

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,052,340	+				+0.6
4,052,345	+				-0.7
4,052,353	-				-0.6
4,052,353	-				-1.9
4,052,368	+				-0.6
4,052,375	+				-1.3
4,052,421	-				-0.5
4,052,421	-				-2.3
4,052,431	-				+0.0
4,052,437	+				+0.8
4,052,437	+				+0.2
4,052,445	-				-1.5
4,052,450	+				+0.1
4,052,485	+				-0.2
4,052,485	+				-1.6
4,052,524	+		GFF4034	0.16	+1.3
4,052,535	-		GFF4034	0.18	-0.9
4,052,539	+		GFF4034	0.18	-1.8
4,052,549	-		GFF4034	0.20	-0.5
4,052,561	+		GFF4034	0.22	-0.5
4,052,593	+		GFF4034	0.27	-2.2
4,052,600	+		GFF4034	0.28	-0.5
4,052,600	+		GFF4034	0.28	-0.8
4,052,600	+		GFF4034	0.28	+0.0
4,052,600	+		GFF4034	0.28	-2.1
4,052,600	+		GFF4034	0.28	+0.1
4,052,600	+		GFF4034	0.28	-1.0
4,052,600	+		GFF4034	0.28	+0.1
4,052,600	+		GFF4034	0.28	-1.2
4,052,600	+		GFF4034	0.28	-0.7
4,052,608	-		GFF4034	0.29	+1.6
4,052,608	-		GFF4034	0.29	-0.9
4,052,608	-		GFF4034	0.29	+1.3
4,052,608	-		GFF4034	0.29	+0.5
4,052,608	-		GFF4034	0.29	+0.1
4,052,608	-		GFF4034	0.29	-0.9
4,052,611	-		GFF4034	0.29	+0.9
4,052,616	-		GFF4034	0.30	-1.1
4,052,628	+		GFF4034	0.32	-0.9
4,052,635	-		GFF4034	0.33	+0.9
4,052,636	-		GFF4034	0.33	-1.0
4,052,656	+		GFF4034	0.36	-0.1
4,052,664	-		GFF4034	0.38	-1.6
4,052,679	+		GFF4034	0.40	-1.5
4,052,682	-		GFF4034	0.40	+0.2
4,052,706	+		GFF4034	0.44	+0.9
4,052,706	+		GFF4034	0.44	+0.5
4,052,711	+		GFF4034	0.45	+0.6
4,052,714	-		GFF4034	0.45	-0.6
4,052,738	+		GFF4034	0.49	-1.5
4,052,767	+		GFF4034	0.53	-0.2
4,052,774	-		GFF4034	0.55	-0.6
4,052,774	-		GFF4034	0.55	-1.5
4,052,784	+		GFF4034	0.56	-0.7
4,052,804	+		GFF4034	0.59	+1.0
4,052,804	+		GFF4034	0.59	+1.1
4,052,812	-		GFF4034	0.60	-0.3
4,052,812	-		GFF4034	0.60	+1.2
4,052,812	-		GFF4034	0.60	+1.2
4,052,814	-		GFF4034	0.61	+0.6
4,052,814	-		GFF4034	0.61	-1.2
4,052,820	+		GFF4034	0.62	-1.4
4,052,828	-		GFF4034	0.63	-1.8
4,052,925	+		GFF4034	0.78	-3.2
4,052,925	+		GFF4034	0.78	-0.7
4,052,925	+		GFF4034	0.78	+1.6
4,052,933	-		GFF4034	0.79	-0.1
4,052,933	-		GFF4034	0.79	+0.4
4,052,933	-		GFF4034	0.79	-0.4
4,052,960	+		GFF4034	0.83	+0.4
4,052,971	+		GFF4034	0.85	-0.6
4,052,979	-		GFF4034	0.86	-0.9
4,052,990	-		GFF4034	0.88	+0.6
4,052,998	-		GFF4034	0.89	+0.3
4,053,011	+				+0.1
4,053,012	+				-0.3
4,053,014	-				+1.3
4,053,040	+				-0.5
4,053,046	-				-0.8
4,053,048	-				-0.4
4,053,061	-				-0.4
4,053,065	+				-0.3
4,053,072	+				-1.2
4,053,072	+				-0.7
4,053,072	+				+0.6
4,053,079	-				-2.6
4,053,080	-				-0.3
4,053,080	-				-2.3
4,053,080	-				-0.4
4,053,080	-				+0.2
4,053,080	-				+0.6
4,053,090	+		GFF4035	0.11	-1.5
4,053,097	-		GFF4035	0.13	-0.3
4,053,098	-		GFF4035	0.13	+0.2
4,053,100	+		GFF4035	0.14	-0.7
4,053,107	+		GFF4035	0.16	+1.0
4,053,107	+		GFF4035	0.16	+1.5
4,053,107	+		GFF4035	0.16	-1.1
4,053,107	+		GFF4035	0.16	-1.5
4,053,107	+		GFF4035	0.16	+0.3
4,053,107	+		GFF4035	0.16	-1.4
4,053,107	+		GFF4035	0.16	-1.3
4,053,107	+		GFF4035	0.16	-1.0
4,053,107	+		GFF4035	0.16	+0.5
4,053,112	+		GFF4035	0.18	-0.2
4,053,112	+		GFF4035	0.18	-0.6
4,053,112	+		GFF4035	0.18	-0.9
4,053,115	-		GFF4035	0.19	+0.8
4,053,115	-		GFF4035	0.19	-1.1
4,053,115	-		GFF4035	0.19	-0.2
4,053,115	-		GFF4035	0.19	-0.4
4,053,115	-		GFF4035	0.19	+0.6
4,053,115	-		GFF4035	0.19	-0.2
4,053,115	-		GFF4035	0.19	-0.5
4,053,115	-		GFF4035	0.19	+0.5
4,053,115	-		GFF4035	0.19	-0.3
4,053,115	-		GFF4035	0.19	-0.2
4,053,115	-		GFF4035	0.19	-0.8
4,053,115	-		GFF4035	0.19	-0.3
4,053,115	-		GFF4035	0.19	+0.1
4,053,115	-		GFF4035	0.19	-0.6
4,053,117	+		GFF4035	0.20	-0.4
4,053,120	-		GFF4035	0.21	-0.1
4,053,125	-		GFF4035	0.23	+0.0
4,053,125	-		GFF4035	0.23	-1.4
4,053,135	-		GFF4035	0.26	-0.3
4,053,164	+		GFF4035	0.36	-1.7
4,053,175	-		GFF4035	0.40	-1.5
4,053,182	+		GFF4035	0.42	+0.4
4,053,182	-		GFF4035	0.42	-1.0
4,053,194	+		GFF4035	0.46	-0.7
4,053,229	+		GFF4035	0.58	-0.4
4,053,229	+		GFF4035	0.58	-1.1
4,053,230	+		GFF4035	0.59	-1.2
4,053,238	-		GFF4035	0.62	-1.1
4,053,238	-		GFF4035	0.62	-1.9
4,053,238	-		GFF4035	0.62	-1.3
4,053,267	+		GFF4035	0.71	+0.0
4,053,269	+		GFF4035	0.72	+0.6
4,053,269	+		GFF4035	0.72	-1.6
4,053,274	+		GFF4035	0.74	-0.8
4,053,274	+		GFF4035	0.74	-1.7
4,053,274	+		GFF4035	0.74	-0.1
4,053,274	+		GFF4035	0.74	+0.2
4,053,274	+		GFF4035	0.74	-0.1
4,053,277	-		GFF4035	0.75	-0.2
4,053,277	-		GFF4035	0.75	+0.6
4,053,282	-		GFF4035	0.77	-0.9
4,053,282	-		GFF4035	0.77	+0.5
4,053,282	-		GFF4035	0.77	+1.1
4,053,297	+		GFF4035	0.82	+0.3
4,053,305	-		GFF4035	0.85	+0.7
4,053,324	+				-0.9
4,053,332	-				-1.5
4,053,342	+				+0.1
4,053,350	+				+0.6
4,053,350	+				+0.5
4,053,350	+				-0.2
4,053,357	+				-0.6
4,053,357	+				-1.9
4,053,357	+				-0.4
4,053,358	-				-1.3
4,053,358	-				+0.6
4,053,364	+				-1.8
4,053,364	+				-0.3
4,053,365	-				-0.7
4,053,365	-				-0.9
4,053,369	+				-0.2
4,053,372	-				-0.9
4,053,376	+				-0.3
4,053,376	+				+0.3
4,053,376	+				-2.7
4,053,376	+				+0.5
4,053,376	+				+0.3
4,053,376	+				-0.8
4,053,377	-				-1.1
4,053,377	-				-1.1
4,053,377	-				-1.6
4,053,384	-				+0.3
4,053,384	-				-0.4
4,053,384	-				-0.1
4,053,395	-				-1.1
4,053,408	-				+0.2
4,053,415	+		GFF4036	0.10	-1.6
4,053,425	+		GFF4036	0.11	-0.8
4,053,425	+		GFF4036	0.11	+0.1
4,053,438	+		GFF4036	0.13	-2.1
4,053,442	+		GFF4036	0.14	+0.3
4,053,443	+		GFF4036	0.14	+0.3
4,053,450	-		GFF4036	0.15	-1.7
4,053,468	+		GFF4036	0.17	+0.6
4,053,470	+		GFF4036	0.17	-0.0
4,053,470	+		GFF4036	0.17	+0.2
4,053,476	-		GFF4036	0.18	-0.8
4,053,478	-		GFF4036	0.18	-1.1
4,053,480	+		GFF4036	0.19	+0.2
4,053,488	-		GFF4036	0.20	-1.6
4,053,488	-		GFF4036	0.20	+0.8
4,053,488	-		GFF4036	0.20	+0.3
4,053,499	+		GFF4036	0.21	-0.7
4,053,499	+		GFF4036	0.21	-0.3
4,053,499	+		GFF4036	0.21	-0.1
4,053,499	+		GFF4036	0.21	-0.7
4,053,499	+		GFF4036	0.21	-0.1
4,053,499	+		GFF4036	0.21	-1.2
4,053,499	+		GFF4036	0.21	+0.2
4,053,499	+		GFF4036	0.21	+0.5
4,053,499	+		GFF4036	0.21	+0.7
4,053,499	+		GFF4036	0.21	-1.3
4,053,499	+		GFF4036	0.21	+0.3
4,053,499	+		GFF4036	0.21	+0.2
4,053,501	+		GFF4036	0.21	-0.3
4,053,502	+		GFF4036	0.21	+1.6
4,053,507	-		GFF4036	0.22	-1.4
4,053,507	-		GFF4036	0.22	-0.5
4,053,507	-		GFF4036	0.22	+0.3
4,053,507	-		GFF4036	0.22	-1.6
4,053,507	-		GFF4036	0.22	-0.8
4,053,510	-		GFF4036	0.23	-0.5
4,053,510	-		GFF4036	0.23	-0.4
4,053,510	-		GFF4036	0.23	-0.9
4,053,511	+		GFF4036	0.23	+1.1
4,053,511	+		GFF4036	0.23	-0.0
4,053,511	+		GFF4036	0.23	+1.5
4,053,511	+		GFF4036	0.23	-3.2
4,053,511	+		GFF4036	0.23	-0.8
4,053,511	+		GFF4036	0.23	+0.8
4,053,519	-		GFF4036	0.24	+0.4
4,053,519	-		GFF4036	0.24	+0.3
4,053,519	-		GFF4036	0.24	-1.3
4,053,519	-		GFF4036	0.24	-0.6
4,053,528	+		GFF4036	0.25	-0.3
4,053,528	+		GFF4036	0.25	-1.1
4,053,536	-		GFF4036	0.26	+0.6
4,053,556	+		GFF4036	0.29	+0.3
4,053,556	+		GFF4036	0.29	-0.8
4,053,556	+		GFF4036	0.29	-0.4
4,053,556	+		GFF4036	0.29	-0.2
4,053,556	+		GFF4036	0.29	-0.1
4,053,564	-		GFF4036	0.30	+1.6
4,053,564	-		GFF4036	0.30	-0.4
4,053,564	-		GFF4036	0.30	-0.4
4,053,564	-		GFF4036	0.30	-1.1
4,053,569	+		GFF4036	0.30	+0.8
4,053,602	+		GFF4036	0.35	-0.9
4,053,603	-		GFF4036	0.35	+0.6
4,053,643	-		GFF4036	0.40	-1.1
4,053,655	+		GFF4036	0.42	+0.6
4,053,670	+		GFF4036	0.44	-1.8
4,053,697	-		GFF4036	0.47	-0.6
4,053,710	-		GFF4036	0.49	+0.2
4,053,716	+		GFF4036	0.50	-1.5
4,053,724	-		GFF4036	0.51	+0.3
4,053,760	+		GFF4036	0.55	-0.7
4,053,760	+		GFF4036	0.55	-1.5
4,053,768	-		GFF4036	0.57	+0.4
4,053,768	-		GFF4036	0.57	-0.5
4,053,768	-		GFF4036	0.57	-2.2
4,053,816	+		GFF4036	0.63	-0.5
4,053,816	+		GFF4036	0.63	-0.7
4,053,816	+		GFF4036	0.63	-0.5
4,053,817	-		GFF4036	0.63	-0.8
4,053,821	+		GFF4036	0.64	+0.4
4,053,823	-		GFF4036	0.64	-2.0
4,053,823	-		GFF4036	0.64	+0.3
4,053,823	-		GFF4036	0.64	-1.3
4,053,829	-		GFF4036	0.65	+0.4
4,053,834	-		GFF4036	0.65	-2.2
4,053,837	+		GFF4036	0.66	-0.7
4,053,837	+		GFF4036	0.66	-0.8
4,053,837	+		GFF4036	0.66	+0.4
4,053,837	+		GFF4036	0.66	-1.0
4,053,845	-		GFF4036	0.67	-1.8
4,053,845	-		GFF4036	0.67	-0.6
4,053,852	-		GFF4036	0.68	-2.7
4,053,854	+		GFF4036	0.68	-0.8
4,053,890	+		GFF4036	0.73	-1.1
4,053,901	-		GFF4036	0.74	-0.5
4,053,904	+		GFF4036	0.74	-0.4
4,053,928	+		GFF4036	0.78	+0.8
4,053,936	-		GFF4036	0.79	+0.4
4,053,941	+		GFF4036	0.79	-1.5
4,053,941	+		GFF4036	0.79	-1.8
4,053,946	+		GFF4036	0.80	+0.3
4,053,949	-		GFF4036	0.80	+1.0
4,053,976	+		GFF4036	0.84	+0.6
4,053,983	+		GFF4036	0.85	-0.9
4,053,984	-		GFF4036	0.85	-1.4
4,053,994	-		GFF4036	0.86	-0.0
4,054,001	-		GFF4036	0.87	-0.5
4,054,001	-		GFF4036	0.87	-0.6
4,054,025	+				-0.6
4,054,085	-				-1.4
4,054,085	-				-1.8
4,054,098	+				+0.2
4,054,103	+				+0.1
4,054,103	+				+0.3
4,054,106	-				+0.7
4,054,109	-				-0.1
4,054,111	-				+0.7
4,054,111	-				-1.1
4,054,111	-				-2.1
4,054,111	-				-0.3
4,054,123	-				-1.2
4,054,163	-				-0.3
4,054,163	-				-2.6
4,054,172	-				-1.1
4,054,174	+				-1.3
4,054,182	+				-0.5
4,054,183	+				-0.3
4,054,191	-				+0.3
4,054,202	+				+1.0
4,054,204	-				-1.6
4,054,205	-				+0.4
4,054,210	-				-1.0
4,054,210	-				-1.1
4,054,210	-				-1.4
4,054,220	+				-0.7
4,054,228	-				-0.6
4,054,228	-				-0.1
4,054,228	-				-0.2
4,054,260	+				+0.5
4,054,262	+				-1.5
4,054,273	+				-0.6
4,054,273	+				+0.0
4,054,273	+				+0.0
4,054,273	+				-2.1
4,054,273	+				-0.5
4,054,273	+				-1.3
4,054,281	-				+0.1
4,054,281	-				-1.8
4,054,281	-				+0.3
4,054,281	-				-0.3
4,054,281	-				-1.1
4,054,281	-				-0.1
4,054,281	-				+0.8
4,054,281	-				-1.1
4,054,281	-				-0.7
4,054,281	-				-0.4
4,054,281	-				-0.3
4,054,309	-				-1.9
4,054,316	+				-0.7
4,054,334	+				-0.5
4,054,341	+				-2.1
4,054,341	+				-0.6
4,054,341	+				-0.2
4,054,341	+				+0.9
4,054,342	-				-1.4
4,054,349	-				-1.2
4,054,349	-				-0.6
4,054,349	-				-1.4
4,054,349	-				-1.3
4,054,372	+				+0.1
4,054,372	+				-0.0
4,054,410	+		GFF4037	0.13	-0.1
4,054,417	+		GFF4037	0.13	+1.7
4,054,417	+		GFF4037	0.13	-1.9
4,054,425	-		GFF4037	0.14	-0.4
4,054,439	-		GFF4037	0.15	-1.3
4,054,444	-		GFF4037	0.15	-0.4
4,054,454	+		GFF4037	0.16	-1.6
4,054,466	-		GFF4037	0.17	-1.1
4,054,467	-		GFF4037	0.17	-0.7
4,054,468	-		GFF4037	0.17	-1.2
4,054,499	+		GFF4037	0.20	-0.6
4,054,499	+		GFF4037	0.20	-1.6
4,054,507	-		GFF4037	0.20	+0.3
4,054,507	-		GFF4037	0.20	-1.0
4,054,515	+		GFF4037	0.21	+0.3
4,054,553	+		GFF4037	0.24	-2.0
4,054,553	+		GFF4037	0.24	+0.3
4,054,555	+		GFF4037	0.24	+0.2
4,054,556	+		GFF4037	0.24	-0.7
4,054,586	+		GFF4037	0.26	+0.8
4,054,589	-		GFF4037	0.27	-0.2
4,054,589	-		GFF4037	0.27	-0.2
4,054,589	-		GFF4037	0.27	-0.8
4,054,591	+		GFF4037	0.27	-1.0
4,054,596	+		GFF4037	0.27	-0.0
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