Strain Fitness in Sphingobium sp. HT1-2 around GFF4006

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,035,921	+				-0.4
4,035,923	-				+0.1
4,035,929	-				+0.9
4,035,933	+				-0.5
4,035,985	-				+0.2
4,035,997	+				+1.0
4,036,002	+				-1.8
4,036,005	-				-0.6
4,036,006	+				-1.1
4,036,007	+				-0.3
4,036,007	+				+0.2
4,036,007	+				-0.4
4,036,007	+				-0.8
4,036,007	+				+0.5
4,036,007	+				-0.4
4,036,007	+				-0.6
4,036,007	+				-0.7
4,036,007	+				-1.4
4,036,007	+				+1.0
4,036,007	+				-1.5
4,036,007	-				-1.4
4,036,010	-				-1.2
4,036,012	+				+0.4
4,036,015	-				-0.0
4,036,015	-				-0.2
4,036,015	-				-1.0
4,036,015	-				-0.1
4,036,015	-				-0.7
4,036,015	-				-2.4
4,036,015	-				-0.7
4,036,015	-				-1.0
4,036,015	-				-0.4
4,036,015	-				-1.4
4,036,015	-				-1.2
4,036,015	-				-0.1
4,036,015	-				-0.8
4,036,015	-				+1.4
4,036,015	-				-0.2
4,036,020	-				-0.5
4,036,020	-				-0.6
4,036,025	-				-1.7
4,036,045	-				+0.2
4,036,053	-				+1.0
4,036,055	+				-1.6
4,036,058	-				-0.8
4,036,063	-				-0.1
4,036,071	-		GFF4005	0.11	-2.4
4,036,073	+		GFF4005	0.11	+0.1
4,036,102	-		GFF4005	0.16	-0.5
4,036,107	+		GFF4005	0.17	+0.6
4,036,107	+		GFF4005	0.17	-0.5
4,036,107	+		GFF4005	0.17	+0.8
4,036,109	+		GFF4005	0.17	-1.4
4,036,115	-		GFF4005	0.18	-0.7
4,036,121	-		GFF4005	0.19	-0.0
4,036,126	+		GFF4005	0.20	-0.6
4,036,145	+		GFF4005	0.23	-0.2
4,036,152	-		GFF4005	0.24	+1.2
4,036,160	+		GFF4005	0.25	+0.0
4,036,168	-		GFF4005	0.26	-0.3
4,036,181	+		GFF4005	0.29	-1.3
4,036,181	+		GFF4005	0.29	-2.5
4,036,190	+		GFF4005	0.30	+1.5
4,036,190	+		GFF4005	0.30	-1.2
4,036,190	+		GFF4005	0.30	-0.6
4,036,191	+		GFF4005	0.30	+0.1
4,036,198	-		GFF4005	0.31	+0.2
4,036,206	-		GFF4005	0.33	+0.0
4,036,215	+		GFF4005	0.34	+0.5
4,036,215	+		GFF4005	0.34	-1.8
4,036,217	-		GFF4005	0.34	+0.0
4,036,219	+		GFF4005	0.35	-0.7
4,036,219	+		GFF4005	0.35	-0.4
4,036,221	-		GFF4005	0.35	+0.8
4,036,222	-		GFF4005	0.35	-1.5
4,036,232	-		GFF4005	0.37	-0.6
4,036,239	+		GFF4005	0.38	-0.2
4,036,240	-		GFF4005	0.38	-1.9
4,036,245	+		GFF4005	0.39	+0.6
4,036,247	-		GFF4005	0.39	-0.4
4,036,247	-		GFF4005	0.39	-0.3
4,036,248	+		GFF4005	0.39	-2.1
4,036,266	+		GFF4005	0.42	-2.1
4,036,266	+		GFF4005	0.42	-1.0
4,036,266	+		GFF4005	0.42	+0.6
4,036,266	+		GFF4005	0.42	+0.7
4,036,266	+		GFF4005	0.42	-1.7
4,036,266	+		GFF4005	0.42	+0.6
4,036,266	+		GFF4005	0.42	-1.3
4,036,271	+		GFF4005	0.43	-1.1
4,036,274	-		GFF4005	0.43	-0.3
4,036,274	-		GFF4005	0.43	-0.2
4,036,274	-		GFF4005	0.43	-1.7
4,036,274	-		GFF4005	0.43	-1.2
4,036,284	+		GFF4005	0.45	-1.1
4,036,288	-		GFF4005	0.46	-0.5
4,036,297	-		GFF4005	0.47	+0.3
4,036,315	+		GFF4005	0.50	-1.8
4,036,370	-		GFF4005	0.59	-0.3
4,036,399	-		GFF4005	0.64	-0.3
4,036,406	-		GFF4005	0.65	+0.1
4,036,407	+		GFF4005	0.65	-1.7
4,036,413	+		GFF4005	0.66	+0.4
4,036,413	+		GFF4005	0.66	-0.0
4,036,421	-		GFF4005	0.67	+0.5
4,036,435	+		GFF4005	0.69	-0.0
4,036,435	+		GFF4005	0.69	-0.8
4,036,457	+		GFF4005	0.73	-1.0
4,036,464	+		GFF4005	0.74	-1.2
4,036,468	+		GFF4005	0.75	-0.0
4,036,477	+		GFF4005	0.76	-0.8
4,036,477	+		GFF4005	0.76	+0.3
4,036,485	-		GFF4005	0.77	-0.6
4,036,518	+		GFF4005	0.83	-0.7
4,036,518	+		GFF4005	0.83	-1.2
4,036,526	-		GFF4005	0.84	+0.7
4,036,528	+		GFF4005	0.84	+0.4
4,036,538	+		GFF4005	0.86	-0.7
4,036,538	+		GFF4005	0.86	-1.1
4,036,563	+				+1.1
4,036,571	-				-1.9
4,036,571	-				-0.8
4,036,571	-				+0.6
4,036,589	+				-0.2
4,036,607	+				-1.9
4,036,616	-				-0.9
4,036,619	+				+1.4
4,036,619	+				-2.2
4,036,620	+				-0.1
4,036,622	-				-0.4
4,036,626	+				-1.4
4,036,627	-				+0.4
4,036,627	-				+0.1
4,036,634	-				-0.9
4,036,644	-				+2.0
4,036,645	+				+0.1
4,036,655	-				-0.6
4,036,660	-				-1.7
4,036,660	-				-0.1
4,036,660	-				-0.4
4,036,665	-				+1.1
4,036,665	-				+0.3
4,036,665	-				-0.8
4,036,667	-				-0.2
4,036,669	+				-0.8
4,036,669	+				-1.3
4,036,670	-				+0.4
4,036,672	-				+0.3
4,036,672	-				-1.5
4,036,672	-				-1.2
4,036,674	+				-2.1
4,036,697	+				+0.1
4,036,697	+				-1.8
4,036,705	-				-2.1
4,036,705	-				-0.5
4,036,705	-				-1.1
4,036,705	-				-0.6
4,036,705	-				-0.4
4,036,710	-				-0.3
4,036,710	-				-0.4
4,036,710	-				+0.3
4,036,710	-				-1.1
4,036,767	-				+0.7
4,036,809	-				-1.5
4,036,810	-				-1.2
4,036,814	+				+0.8
4,036,824	+				+0.9
4,036,824	+				-0.8
4,036,830	-				-1.2
4,036,832	-				-0.5
4,036,865	-				+0.5
4,036,887	+				+0.4
4,036,899	+				-0.2
4,036,899	+				-1.2
4,036,901	+				-0.9
4,036,901	+				-1.6
4,036,907	-				-0.2
4,036,909	-				-1.1
4,036,914	+				-0.4
4,036,915	+				-0.5
4,036,915	+				+1.0
4,036,915	+				+0.8
4,036,920	-				+0.9
4,036,922	-				-0.6
4,036,930	+				-1.5
4,036,930	+				+1.5
4,036,938	-		GFF4006	0.11	-1.0
4,036,938	-		GFF4006	0.11	+0.8
4,036,938	-		GFF4006	0.11	+0.4
4,036,945	+		GFF4006	0.12	-1.4
4,036,947	+		GFF4006	0.12	+0.6
4,036,947	+		GFF4006	0.12	-1.1
4,036,947	+		GFF4006	0.12	+1.7
4,036,948	-		GFF4006	0.12	-0.6
4,036,955	-		GFF4006	0.14	-0.2
4,036,962	+		GFF4006	0.15	-1.0
4,036,962	+		GFF4006	0.15	-0.7
4,036,962	+		GFF4006	0.15	-1.0
4,036,962	+		GFF4006	0.15	+0.4
4,036,970	-		GFF4006	0.16	+1.0
4,037,040	+		GFF4006	0.26	-1.8
4,037,040	+		GFF4006	0.26	-1.7
4,037,040	+		GFF4006	0.26	-0.2
4,037,040	+		GFF4006	0.26	-1.0
4,037,040	+		GFF4006	0.26	+1.4
4,037,040	+		GFF4006	0.26	-1.4
4,037,040	+		GFF4006	0.26	-0.7
4,037,040	+		GFF4006	0.26	+1.6
4,037,047	+		GFF4006	0.27	-0.6
4,037,047	+		GFF4006	0.27	-1.0
4,037,047	-		GFF4006	0.27	+0.4
4,037,047	-		GFF4006	0.27	+0.6
4,037,047	-		GFF4006	0.27	-0.9
4,037,047	-		GFF4006	0.27	+0.4
4,037,048	-		GFF4006	0.27	-0.6
4,037,048	-		GFF4006	0.27	+0.0
4,037,048	-		GFF4006	0.27	+0.1
4,037,048	-		GFF4006	0.27	+1.6
4,037,055	-		GFF4006	0.28	-1.2
4,037,055	-		GFF4006	0.28	-0.6
4,037,055	-		GFF4006	0.28	-1.6
4,037,055	-		GFF4006	0.28	-0.2
4,037,055	-		GFF4006	0.28	-1.1
4,037,065	+		GFF4006	0.30	-1.7
4,037,082	-		GFF4006	0.32	+0.5
4,037,084	-		GFF4006	0.33	-0.3
4,037,122	+		GFF4006	0.38	-0.9
4,037,122	+		GFF4006	0.38	-0.3
4,037,122	+		GFF4006	0.38	-0.9
4,037,130	+		GFF4006	0.40	-0.7
4,037,130	+		GFF4006	0.40	+0.7
4,037,130	-		GFF4006	0.40	+0.8
4,037,137	+		GFF4006	0.41	-1.2
4,037,138	-		GFF4006	0.41	-0.4
4,037,138	-		GFF4006	0.41	-0.5
4,037,143	+		GFF4006	0.42	+0.2
4,037,151	-		GFF4006	0.43	-1.7
4,037,151	-		GFF4006	0.43	+1.3
4,037,151	-		GFF4006	0.43	+0.6
4,037,177	+		GFF4006	0.47	-0.7
4,037,190	+		GFF4006	0.49	+0.6
4,037,198	-		GFF4006	0.50	+0.3
4,037,223	-		GFF4006	0.53	-1.0
4,037,224	+		GFF4006	0.54	-0.7
4,037,224	+		GFF4006	0.54	-0.5
4,037,224	+		GFF4006	0.54	+1.0
4,037,224	+		GFF4006	0.54	-0.2
4,037,232	-		GFF4006	0.55	+0.4
4,037,244	+		GFF4006	0.57	-1.8
4,037,255	-		GFF4006	0.58	+0.3
4,037,263	+		GFF4006	0.59	+0.6
4,037,272	+		GFF4006	0.61	-0.7
4,037,278	+		GFF4006	0.62	-0.6
4,037,282	+		GFF4006	0.62	-1.8
4,037,290	-		GFF4006	0.63	+0.2
4,037,290	-		GFF4006	0.63	-2.5
4,037,299	-		GFF4006	0.65	-0.5
4,037,302	+		GFF4006	0.65	+0.3
4,037,308	-		GFF4006	0.66	-0.4
4,037,310	-		GFF4006	0.66	-0.2
4,037,310	-		GFF4006	0.66	-0.3
4,037,314	+		GFF4006	0.67	-0.8
4,037,319	+		GFF4006	0.68	-2.1
4,037,319	+		GFF4006	0.68	-1.0
4,037,319	+		GFF4006	0.68	-1.5
4,037,327	-		GFF4006	0.69	-0.5
4,037,327	-		GFF4006	0.69	-1.6
4,037,327	-		GFF4006	0.69	-1.0
4,037,327	-		GFF4006	0.69	+1.1
4,037,350	-		GFF4006	0.72	+1.0
4,037,352	+		GFF4006	0.73	-1.9
4,037,360	-		GFF4006	0.74	+0.7
4,037,360	-		GFF4006	0.74	-0.7
4,037,368	-		GFF4006	0.75	+0.6
4,037,375	+		GFF4006	0.76	-0.5
4,037,378	-		GFF4006	0.76	+0.5
4,037,378	-		GFF4006	0.76	-1.0
4,037,383	-		GFF4006	0.77	-0.6
4,037,410	-		GFF4006	0.81	-0.2
4,037,445	-		GFF4006	0.86	-1.3
4,037,456	+		GFF4006	0.88	-0.4
4,037,462	+		GFF4006	0.89	-1.1
4,037,470	-				-1.6
4,037,474	+				+0.5
4,037,482	+				+1.6
4,037,507	+				-1.0
4,037,550	+				+0.5
4,037,552	+		GFF4007	0.10	-0.9
4,037,566	+		GFF4007	0.17	+0.2
4,037,566	+		GFF4007	0.17	-1.8
4,037,566	+		GFF4007	0.17	+1.4
4,037,587	+		GFF4007	0.28	-1.8
4,037,587	+		GFF4007	0.28	-0.1
4,037,587	+		GFF4007	0.28	-0.5
4,037,593	+		GFF4007	0.31	-1.1
4,037,595	-		GFF4007	0.32	+1.1
4,037,595	-		GFF4007	0.32	-0.4
4,037,595	-		GFF4007	0.32	-0.4
4,037,595	-		GFF4007	0.32	+0.7
4,037,610	+		GFF4007	0.40	-0.6
4,037,610	+		GFF4007	0.40	-1.2
4,037,610	+		GFF4007	0.40	+0.2
4,037,610	+		GFF4007	0.40	+1.1
4,037,610	+		GFF4007	0.40	-0.8
4,037,610	+		GFF4007	0.40	-0.3
4,037,610	+		GFF4007	0.40	-1.0
4,037,610	+		GFF4007	0.40	-1.5
4,037,616	-		GFF4007	0.43	-0.8
4,037,618	-		GFF4007	0.44	-1.4
4,037,618	-		GFF4007	0.44	+0.9
4,037,618	-		GFF4007	0.44	+1.1
4,037,618	-		GFF4007	0.44	+0.2
4,037,618	-		GFF4007	0.44	-1.0
4,037,618	-		GFF4007	0.44	+1.1
4,037,665	+		GFF4007	0.68	-0.7
4,037,665	+		GFF4007	0.68	-0.4
4,037,680	-		GFF4007	0.76	-0.4
4,037,680	-		GFF4007	0.76	-0.2
4,037,685	-		GFF4007	0.78	-1.5
4,037,693	-		GFF4007	0.83	-0.7
4,037,693	-		GFF4007	0.83	+0.7
4,037,708	+				-1.3
4,037,711	-				-0.7
4,037,716	-				-0.0
4,037,723	+				+0.1
4,037,735	+				-1.9
4,037,764	+		GFF4008	0.25	+0.5
4,037,777	-		GFF4008	0.33	-0.6
4,037,781	+		GFF4008	0.36	+0.2
4,037,789	-		GFF4008	0.41	-1.9
4,037,791	+		GFF4008	0.42	+1.2
4,037,791	+		GFF4008	0.42	+0.1
4,037,791	+		GFF4008	0.42	+0.0
4,037,791	+		GFF4008	0.42	-0.5
4,037,791	+		GFF4008	0.42	+0.0
4,037,791	+		GFF4008	0.42	+0.1
4,037,791	+		GFF4008	0.42	-1.9
4,037,791	+		GFF4008	0.42	+1.6
4,037,791	+		GFF4008	0.42	-0.1
4,037,799	-		GFF4008	0.48	-1.2
4,037,799	-		GFF4008	0.48	+1.5
4,037,799	-		GFF4008	0.48	+1.5
4,037,799	-		GFF4008	0.48	-0.5
4,037,799	-		GFF4008	0.48	-1.7
4,037,799	-		GFF4008	0.48	+0.8
4,037,799	-		GFF4008	0.48	-0.4
4,037,799	-		GFF4008	0.48	+0.4
4,037,799	-		GFF4008	0.48	+0.5
4,037,799	-		GFF4008	0.48	+1.0
4,037,799	-		GFF4008	0.48	+0.1
4,037,799	-		GFF4008	0.48	+1.0
4,037,816	+		GFF4008	0.59	+1.1
4,037,829	+		GFF4008	0.67	+0.9
4,037,851	+		GFF4008	0.82	+0.6
4,037,862	+		GFF4008	0.89	+0.9
4,037,886	+				-1.4
4,037,894	-				-0.8
4,037,917	+				+1.4
4,037,925	-				-0.5
4,037,933	+				-0.8
4,037,955	+				-1.8
4,037,958	-				-0.5
4,037,963	-				-2.2
4,037,969	+				+0.9
4,037,969	+				+0.1
4,037,977	-				+0.2
4,037,978	-				-0.4
4,037,978	-				+0.5
4,037,980	+				-0.1
4,038,006	-				+1.3
4,038,006	-				+1.3
4,038,053	-				-0.1
4,038,063	+				-0.9
4,038,071	-				+0.7
4,038,076	-				+0.1
4,038,156	+		GFF4009	0.21	-1.3
4,038,171	+		GFF4009	0.23	-1.9
4,038,179	-		GFF4009	0.25	+0.5
4,038,181	-		GFF4009	0.25	+0.3
4,038,183	+		GFF4009	0.25	+0.4
4,038,183	+		GFF4009	0.25	+0.3
4,038,183	-		GFF4009	0.25	-1.2
4,038,191	-		GFF4009	0.27	+0.1
4,038,191	-		GFF4009	0.27	+0.6
4,038,192	+		GFF4009	0.27	-0.7
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