Strain Fitness in Sphingobium sp. HT1-2 around GFF3809

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,849,380	+				-0.7
3,849,384	+				+1.3
3,849,394	-				-1.4
3,849,449	-		GFF3807	0.12	+0.0
3,849,451	-		GFF3807	0.13	+0.1
3,849,460	+		GFF3807	0.16	-0.5
3,849,466	-		GFF3807	0.18	-0.3
3,849,467	-		GFF3807	0.19	-0.8
3,849,468	-		GFF3807	0.19	-0.7
3,849,484	+		GFF3807	0.25	-0.8
3,849,484	-		GFF3807	0.25	-1.0
3,849,489	+		GFF3807	0.27	-0.9
3,849,492	-		GFF3807	0.28	-2.3
3,849,492	-		GFF3807	0.28	-0.2
3,849,518	-		GFF3807	0.38	-1.4
3,849,558	+		GFF3807	0.53	+0.5
3,849,564	-		GFF3807	0.55	-0.6
3,849,566	-		GFF3807	0.56	+0.3
3,849,587	+		GFF3807	0.64	-0.1
3,849,587	+		GFF3807	0.64	-0.7
3,849,595	-		GFF3807	0.67	-0.6
3,849,641	+		GFF3807	0.84	+0.3
3,849,649	-		GFF3807	0.87	+0.3
3,849,649	-		GFF3807	0.87	-0.6
3,849,650	+		GFF3807	0.87	-1.0
3,849,665	+				-1.3
3,849,705	+				-1.7
3,849,708	-				-0.0
3,849,712	+				-0.9
3,849,713	-				+0.5
3,849,713	-				+1.5
3,849,749	-		GFF3808	0.17	-2.2
3,849,760	+		GFF3808	0.20	-0.9
3,849,845	+		GFF3808	0.41	-1.0
3,849,859	-		GFF3808	0.45	+0.4
3,849,881	+		GFF3808	0.50	+0.4
3,849,883	+		GFF3808	0.51	-0.5
3,849,891	-		GFF3808	0.53	-1.6
3,849,898	-		GFF3808	0.55	+0.2
3,849,914	+		GFF3808	0.59	-0.7
3,849,914	+		GFF3808	0.59	-0.5
3,849,914	+		GFF3808	0.59	+0.3
3,849,914	+		GFF3808	0.59	-1.6
3,849,914	+		GFF3808	0.59	-0.3
3,849,919	+		GFF3808	0.60	-0.0
3,849,919	+		GFF3808	0.60	-1.6
3,849,919	+		GFF3808	0.60	-1.0
3,849,919	+		GFF3808	0.60	+0.2
3,849,921	+		GFF3808	0.60	-2.4
3,849,922	-		GFF3808	0.61	+0.1
3,849,922	-		GFF3808	0.61	-0.6
3,849,922	-		GFF3808	0.61	+0.2
3,849,922	-		GFF3808	0.61	+0.5
3,849,922	-		GFF3808	0.61	-0.7
3,849,922	-		GFF3808	0.61	-1.2
3,849,922	-		GFF3808	0.61	-0.3
3,849,922	-		GFF3808	0.61	-1.1
3,849,927	-		GFF3808	0.62	-2.5
3,849,927	-		GFF3808	0.62	+0.6
3,849,942	+		GFF3808	0.66	-0.7
3,849,942	+		GFF3808	0.66	-0.1
3,849,950	-		GFF3808	0.68	-0.2
3,849,950	-		GFF3808	0.68	-1.1
3,849,951	-		GFF3808	0.68	-1.1
3,849,970	-		GFF3808	0.73	+1.1
3,849,973	+		GFF3808	0.73	+0.8
3,849,973	+		GFF3808	0.73	-0.6
3,849,976	+		GFF3808	0.74	-0.0
3,849,976	+		GFF3808	0.74	+1.3
3,849,976	+		GFF3808	0.74	-1.7
3,849,981	-		GFF3808	0.75	+0.6
3,849,981	-		GFF3808	0.75	-1.0
3,849,981	-		GFF3808	0.75	-2.0
3,849,983	+		GFF3808	0.76	-0.9
3,850,044	+				+0.0
3,850,050	+				-1.3
3,850,063	+				-1.7
3,850,063	+				-0.3
3,850,071	-				-1.0
3,850,074	+				-0.8
3,850,080	+				-0.3
3,850,080	+				-2.4
3,850,082	+				+0.0
3,850,088	-				+0.1
3,850,088	-				-0.9
3,850,088	-				+0.3
3,850,088	-				-0.5
3,850,088	-				-1.5
3,850,090	-				-0.2
3,850,095	+				-0.6
3,850,097	+				-1.4
3,850,097	+				-1.2
3,850,097	+				-0.8
3,850,097	+				+0.5
3,850,097	+				-0.4
3,850,097	+				-1.0
3,850,105	-				-1.7
3,850,105	-				-0.7
3,850,105	-				+1.0
3,850,105	-				-1.5
3,850,137	+				-1.0
3,850,145	-				-1.1
3,850,145	-				-0.5
3,850,153	+				-0.3
3,850,210	+				-0.5
3,850,218	-				+0.4
3,850,218	-				-0.6
3,850,231	-		GFF3809	0.10	-0.8
3,850,233	+		GFF3809	0.10	+0.7
3,850,234	+		GFF3809	0.11	-0.8
3,850,234	+		GFF3809	0.11	-2.1
3,850,236	-		GFF3809	0.11	-1.1
3,850,241	-		GFF3809	0.11	-0.8
3,850,283	-		GFF3809	0.14	-0.0
3,850,283	-		GFF3809	0.14	-0.6
3,850,285	-		GFF3809	0.14	-0.2
3,850,329	+		GFF3809	0.17	-1.7
3,850,349	+		GFF3809	0.18	-0.3
3,850,363	+		GFF3809	0.19	+0.3
3,850,373	+		GFF3809	0.20	-0.5
3,850,392	+		GFF3809	0.21	-2.2
3,850,392	+		GFF3809	0.21	+0.1
3,850,392	+		GFF3809	0.21	-1.3
3,850,392	+		GFF3809	0.21	+0.3
3,850,400	-		GFF3809	0.21	-0.1
3,850,400	-		GFF3809	0.21	-1.0
3,850,416	+		GFF3809	0.23	-0.1
3,850,416	+		GFF3809	0.23	-1.1
3,850,422	+		GFF3809	0.23	-0.1
3,850,424	-		GFF3809	0.23	-1.3
3,850,430	-		GFF3809	0.23	+0.3
3,850,430	-		GFF3809	0.23	-1.9
3,850,430	-		GFF3809	0.23	+0.8
3,850,438	-		GFF3809	0.24	+0.4
3,850,448	+		GFF3809	0.25	-0.5
3,850,452	-		GFF3809	0.25	+0.4
3,850,459	+		GFF3809	0.25	-0.8
3,850,459	+		GFF3809	0.25	-0.5
3,850,459	+		GFF3809	0.25	-1.2
3,850,467	-		GFF3809	0.26	+0.2
3,850,497	+		GFF3809	0.28	-0.6
3,850,500	+		GFF3809	0.28	+0.1
3,850,505	+		GFF3809	0.28	-0.8
3,850,505	+		GFF3809	0.28	-0.5
3,850,505	+		GFF3809	0.28	-0.6
3,850,505	+		GFF3809	0.28	-0.3
3,850,513	-		GFF3809	0.29	-0.3
3,850,513	-		GFF3809	0.29	-0.9
3,850,513	-		GFF3809	0.29	-0.3
3,850,533	-		GFF3809	0.30	-0.8
3,850,547	-		GFF3809	0.31	-1.0
3,850,577	+		GFF3809	0.33	-1.0
3,850,587	+		GFF3809	0.34	-0.2
3,850,595	-		GFF3809	0.34	-0.4
3,850,602	-		GFF3809	0.35	-0.1
3,850,619	+		GFF3809	0.36	-0.0
3,850,667	-		GFF3809	0.39	-0.3
3,850,684	+		GFF3809	0.40	-1.6
3,850,686	-		GFF3809	0.40	+0.4
3,850,692	+		GFF3809	0.41	+0.7
3,850,692	+		GFF3809	0.41	+1.0
3,850,692	+		GFF3809	0.41	+0.2
3,850,692	+		GFF3809	0.41	-0.7
3,850,697	+		GFF3809	0.41	-0.6
3,850,697	+		GFF3809	0.41	-0.8
3,850,697	+		GFF3809	0.41	-0.5
3,850,697	+		GFF3809	0.41	+0.6
3,850,697	+		GFF3809	0.41	-1.3
3,850,697	+		GFF3809	0.41	-1.3
3,850,703	+		GFF3809	0.42	-1.0
3,850,703	+		GFF3809	0.42	-1.8
3,850,705	-		GFF3809	0.42	-1.5
3,850,705	-		GFF3809	0.42	-1.2
3,850,705	-		GFF3809	0.42	-1.0
3,850,705	-		GFF3809	0.42	-1.8
3,850,715	-		GFF3809	0.42	-0.3
3,850,720	+		GFF3809	0.43	+1.3
3,850,742	+		GFF3809	0.44	+0.3
3,850,742	+		GFF3809	0.44	-0.8
3,850,750	-		GFF3809	0.45	-0.9
3,850,750	-		GFF3809	0.45	+0.2
3,850,750	-		GFF3809	0.45	+0.7
3,850,750	-		GFF3809	0.45	-1.5
3,850,750	-		GFF3809	0.45	-1.3
3,850,750	-		GFF3809	0.45	-0.7
3,850,790	+		GFF3809	0.47	-0.0
3,850,825	-		GFF3809	0.50	+0.2
3,850,858	+		GFF3809	0.52	+0.0
3,850,858	+		GFF3809	0.52	+0.4
3,850,858	+		GFF3809	0.52	-0.6
3,850,858	+		GFF3809	0.52	+0.2
3,850,858	+		GFF3809	0.52	-0.0
3,850,858	+		GFF3809	0.52	+0.2
3,850,858	+		GFF3809	0.52	+1.6
3,850,858	+		GFF3809	0.52	-1.4
3,850,858	+		GFF3809	0.52	+0.6
3,850,858	+		GFF3809	0.52	-1.4
3,850,858	+		GFF3809	0.52	+0.8
3,850,866	-		GFF3809	0.52	+0.5
3,850,866	-		GFF3809	0.52	-1.2
3,850,866	-		GFF3809	0.52	-1.0
3,850,866	-		GFF3809	0.52	-0.8
3,850,866	-		GFF3809	0.52	+0.3
3,850,866	-		GFF3809	0.52	+0.5
3,850,866	-		GFF3809	0.52	-0.9
3,850,866	-		GFF3809	0.52	-0.8
3,850,866	-		GFF3809	0.52	-1.1
3,850,866	-		GFF3809	0.52	-0.9
3,850,870	+		GFF3809	0.53	-1.5
3,850,884	-		GFF3809	0.54	+0.1
3,850,908	+		GFF3809	0.55	+1.5
3,850,925	+		GFF3809	0.56	-0.5
3,850,939	+		GFF3809	0.57	-1.5
3,850,957	-		GFF3809	0.58	-1.0
3,850,960	+		GFF3809	0.59	-0.7
3,850,968	-		GFF3809	0.59	-1.0
3,850,968	-		GFF3809	0.59	-1.7
3,850,977	+		GFF3809	0.60	-0.2
3,850,985	-		GFF3809	0.60	-0.5
3,850,994	+		GFF3809	0.61	-1.0
3,851,002	-		GFF3809	0.61	+1.0
3,851,002	-		GFF3809	0.61	-0.7
3,851,012	-		GFF3809	0.62	+0.9
3,851,021	+		GFF3809	0.63	+0.6
3,851,047	+		GFF3809	0.64	+0.3
3,851,069	-		GFF3809	0.66	-1.6
3,851,076	+		GFF3809	0.66	-0.6
3,851,077	+		GFF3809	0.66	+0.7
3,851,084	+		GFF3809	0.67	-0.7
3,851,089	+		GFF3809	0.67	+0.3
3,851,090	+		GFF3809	0.67	-1.1
3,851,100	+		GFF3809	0.68	+1.3
3,851,108	-		GFF3809	0.68	+0.9
3,851,108	-		GFF3809	0.68	+0.7
3,851,108	-		GFF3809	0.68	-1.6
3,851,117	+		GFF3809	0.69	-0.0
3,851,125	-		GFF3809	0.69	+0.7
3,851,132	+		GFF3809	0.70	-0.8
3,851,151	+		GFF3809	0.71	+0.3
3,851,151	+		GFF3809	0.71	+1.2
3,851,167	+		GFF3809	0.72	-0.6
3,851,169	-		GFF3809	0.72	+0.1
3,851,173	+		GFF3809	0.73	-0.5
3,851,175	-		GFF3809	0.73	-0.0
3,851,190	-		GFF3809	0.74	-1.2
3,851,212	+		GFF3809	0.75	+0.6
3,851,238	-		GFF3809	0.77	+0.3
3,851,241	-		GFF3809	0.77	-1.0
3,851,270	-		GFF3809	0.79	+0.4
3,851,287	+		GFF3809	0.80	-0.5
3,851,292	+		GFF3809	0.80	-1.4
3,851,292	+		GFF3809	0.80	-0.5
3,851,292	+		GFF3809	0.80	-0.3
3,851,292	+		GFF3809	0.80	+0.4
3,851,292	+		GFF3809	0.80	-0.6
3,851,292	+		GFF3809	0.80	-2.3
3,851,292	+		GFF3809	0.80	-0.5
3,851,292	+		GFF3809	0.80	+1.1
3,851,292	+		GFF3809	0.80	-1.3
3,851,292	+		GFF3809	0.80	+0.8
3,851,292	+		GFF3809	0.80	-0.7
3,851,292	+		GFF3809	0.80	-0.5
3,851,292	+		GFF3809	0.80	-1.6
3,851,292	+		GFF3809	0.80	-1.1
3,851,292	+		GFF3809	0.80	+0.1
3,851,295	-		GFF3809	0.81	+1.0
3,851,300	-		GFF3809	0.81	+0.3
3,851,300	-		GFF3809	0.81	-1.0
3,851,300	-		GFF3809	0.81	-0.2
3,851,300	-		GFF3809	0.81	+0.3
3,851,300	-		GFF3809	0.81	-1.9
3,851,300	-		GFF3809	0.81	-1.8
3,851,300	-		GFF3809	0.81	+1.1
3,851,300	-		GFF3809	0.81	+0.3
3,851,300	-		GFF3809	0.81	-0.3
3,851,300	-		GFF3809	0.81	-0.5
3,851,300	-		GFF3809	0.81	-0.6
3,851,300	-		GFF3809	0.81	-0.4
3,851,300	-		GFF3809	0.81	-0.6
3,851,300	-		GFF3809	0.81	-0.1
3,851,300	-		GFF3809	0.81	+0.1
3,851,300	-		GFF3809	0.81	-0.6
3,851,300	-		GFF3809	0.81	+0.4
3,851,300	-		GFF3809	0.81	+0.5
3,851,300	-		GFF3809	0.81	+0.2
3,851,300	-		GFF3809	0.81	-1.0
3,851,300	-		GFF3809	0.81	+0.4
3,851,300	-		GFF3809	0.81	-1.6
3,851,300	-		GFF3809	0.81	-1.4
3,851,300	-		GFF3809	0.81	-0.6
3,851,313	+		GFF3809	0.82	-0.9
3,851,388	+		GFF3809	0.87	-0.8
3,851,388	+		GFF3809	0.87	+0.0
3,851,394	+		GFF3809	0.87	-1.8
3,851,396	-		GFF3809	0.87	-0.3
3,851,396	-		GFF3809	0.87	-0.5
3,851,396	-		GFF3809	0.87	+0.5
3,851,410	+		GFF3809	0.88	+0.5
3,851,412	+		GFF3809	0.88	+0.5
3,851,412	+		GFF3809	0.88	+1.3
3,851,412	+		GFF3809	0.88	-1.0
3,851,412	+		GFF3809	0.88	+0.1
3,851,418	-		GFF3809	0.89	+1.0
3,851,418	-		GFF3809	0.89	-2.2
3,851,420	-		GFF3809	0.89	-0.4
3,851,424	+		GFF3809	0.89	+0.4
3,851,425	+		GFF3809	0.89	-0.0
3,851,425	+		GFF3809	0.89	-0.7
3,851,425	+		GFF3809	0.89	-0.1
3,851,425	+		GFF3809	0.89	+0.8
3,851,479	+				-1.3
3,851,484	+				-0.7
3,851,485	+				-0.3
3,851,485	+				-2.2
3,851,492	-				-1.8
3,851,493	-				-0.4
3,851,495	+				-1.7
3,851,534	-				-1.9
3,851,571	+				+0.4
3,851,571	+				-0.1
3,851,572	+				+0.9
3,851,579	-				-0.3
3,851,602	-				-1.6
3,851,682	+		GFF3810	0.15	-0.5
3,851,700	+		GFF3810	0.22	+0.0
3,851,708	-		GFF3810	0.25	-1.0
3,851,719	+		GFF3810	0.29	-0.4
3,851,723	+		GFF3810	0.30	-0.6
3,851,723	+		GFF3810	0.30	-0.0
3,851,746	+		GFF3810	0.38	-0.6
3,851,751	+		GFF3810	0.40	-1.9
3,851,751	+		GFF3810	0.40	+0.7
3,851,751	+		GFF3810	0.40	-0.4
3,851,751	+		GFF3810	0.40	+0.5
3,851,751	+		GFF3810	0.40	+0.7
3,851,751	+		GFF3810	0.40	+1.3
3,851,751	+		GFF3810	0.40	-1.0
3,851,751	+		GFF3810	0.40	-1.8
3,851,759	-		GFF3810	0.43	-0.7
3,851,759	-		GFF3810	0.43	-0.3
3,851,759	-		GFF3810	0.43	-1.5
3,851,793	+		GFF3810	0.56	-0.1
3,851,862	+		GFF3810	0.81	-0.6
3,851,907	+				+1.0
3,851,915	-				+0.7