Strain Fitness in Sphingobium sp. HT1-2 around GFF3791

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,830,632	-		GFF3789	0.26	+0.2
3,830,633	-		GFF3789	0.26	-0.6
3,830,633	-		GFF3789	0.26	-0.6
3,830,637	-		GFF3789	0.26	-1.2
3,830,637	-		GFF3789	0.26	+1.1
3,830,692	+		GFF3789	0.31	-0.5
3,830,695	-		GFF3789	0.31	-0.8
3,830,699	+		GFF3789	0.32	-0.9
3,830,700	-		GFF3789	0.32	+0.6
3,830,700	-		GFF3789	0.32	+0.4
3,830,712	+		GFF3789	0.33	-0.1
3,830,766	-		GFF3789	0.38	-0.2
3,830,775	+		GFF3789	0.38	-0.3
3,830,776	-		GFF3789	0.39	-1.2
3,830,783	+		GFF3789	0.39	-1.5
3,830,785	-		GFF3789	0.39	-0.3
3,830,804	-		GFF3789	0.41	-0.8
3,830,804	-		GFF3789	0.41	-0.7
3,830,806	+		GFF3789	0.41	+0.8
3,830,806	+		GFF3789	0.41	-1.2
3,830,809	-		GFF3789	0.41	-1.2
3,830,814	-		GFF3789	0.42	-1.3
3,830,816	+		GFF3789	0.42	+0.6
3,830,821	+		GFF3789	0.42	+0.4
3,830,823	+		GFF3789	0.43	+0.9
3,830,827	+		GFF3789	0.43	+0.3
3,830,827	+		GFF3789	0.43	-0.7
3,830,840	+		GFF3789	0.44	-0.4
3,830,850	+		GFF3789	0.45	-1.0
3,830,858	-		GFF3789	0.46	-1.1
3,830,858	-		GFF3789	0.46	+0.5
3,830,858	-		GFF3789	0.46	-0.8
3,830,913	-		GFF3789	0.51	+0.8
3,830,913	-		GFF3789	0.51	-0.3
3,830,913	-		GFF3789	0.51	+0.6
3,830,914	-		GFF3789	0.51	-0.7
3,830,935	-		GFF3789	0.53	+1.4
3,831,041	+		GFF3789	0.62	-1.6
3,831,104	+		GFF3789	0.67	-1.4
3,831,104	+		GFF3789	0.67	+0.3
3,831,112	-		GFF3789	0.68	-0.2
3,831,112	-		GFF3789	0.68	-0.6
3,831,151	+		GFF3789	0.72	+0.0
3,831,151	+		GFF3789	0.72	-0.7
3,831,151	+		GFF3789	0.72	+0.2
3,831,151	+		GFF3789	0.72	-0.8
3,831,156	+		GFF3789	0.72	+1.8
3,831,159	-		GFF3789	0.72	+0.4
3,831,159	-		GFF3789	0.72	-0.3
3,831,160	-		GFF3789	0.72	-1.5
3,831,160	-		GFF3789	0.72	-0.7
3,831,160	-		GFF3789	0.72	-3.0
3,831,162	+		GFF3789	0.72	+0.2
3,831,207	-		GFF3789	0.76	-0.2
3,831,217	+		GFF3789	0.77	+1.4
3,831,243	+		GFF3789	0.80	-0.3
3,831,243	+		GFF3789	0.80	-1.8
3,831,248	+		GFF3789	0.80	+0.2
3,831,248	+		GFF3789	0.80	-0.5
3,831,251	-		GFF3789	0.80	+0.1
3,831,251	-		GFF3789	0.80	-1.5
3,831,256	-		GFF3789	0.81	+0.0
3,831,302	+		GFF3789	0.85	+0.2
3,831,317	+		GFF3789	0.86	+0.4
3,831,325	-		GFF3789	0.87	-1.3
3,831,336	+		GFF3789	0.88	+1.0
3,831,351	-		GFF3789	0.89	-1.2
3,831,381	+				-0.6
3,831,381	+				-0.5
3,831,404	+				+0.0
3,831,447	+				-0.4
3,831,455	-				+1.3
3,831,487	+				-2.1
3,831,496	+				+0.2
3,831,566	+		GFF3790	0.54	+0.7
3,831,621	+				-0.9
3,831,621	+				+0.2
3,831,653	+				-0.4
3,831,653	+				+0.6
3,831,720	-				-2.3
3,831,767	-				-1.0
3,831,813	+				-0.4
3,831,840	+				+3.2
3,831,847	-				-0.0
3,831,850	+				-1.5
3,831,873	+				-0.4
3,831,881	-				-0.4
3,831,886	-				-0.4
3,831,887	+				-0.3
3,831,929	-		GFF3791	0.12	-0.4
3,831,931	-		GFF3791	0.12	+0.5
3,831,936	-		GFF3791	0.12	-0.0
3,831,966	+		GFF3791	0.13	-0.5
3,831,974	-		GFF3791	0.13	+1.6
3,831,989	-		GFF3791	0.14	-1.3
3,832,021	+		GFF3791	0.15	-0.8
3,832,065	+		GFF3791	0.17	-1.2
3,832,073	-		GFF3791	0.17	+0.4
3,832,080	+		GFF3791	0.17	-0.6
3,832,083	-		GFF3791	0.18	-1.0
3,832,131	+		GFF3791	0.19	-0.2
3,832,132	+		GFF3791	0.19	+2.2
3,832,139	-		GFF3791	0.20	-0.1
3,832,140	-		GFF3791	0.20	-2.2
3,832,156	+		GFF3791	0.20	-1.1
3,832,164	-		GFF3791	0.21	+1.1
3,832,164	-		GFF3791	0.21	+0.2
3,832,186	-		GFF3791	0.22	+0.9
3,832,193	-		GFF3791	0.22	-1.1
3,832,193	-		GFF3791	0.22	-1.4
3,832,193	-		GFF3791	0.22	-0.0
3,832,193	-		GFF3791	0.22	-0.7
3,832,193	-		GFF3791	0.22	-0.4
3,832,210	-		GFF3791	0.23	+0.5
3,832,215	-		GFF3791	0.23	-0.8
3,832,215	-		GFF3791	0.23	+0.4
3,832,235	+		GFF3791	0.23	-1.0
3,832,235	+		GFF3791	0.23	+0.2
3,832,240	+		GFF3791	0.24	-0.7
3,832,242	+		GFF3791	0.24	+0.7
3,832,245	+		GFF3791	0.24	-0.2
3,832,248	-		GFF3791	0.24	-1.4
3,832,255	-		GFF3791	0.24	-1.2
3,832,281	+		GFF3791	0.25	-0.0
3,832,291	-		GFF3791	0.26	-1.5
3,832,294	-		GFF3791	0.26	+0.1
3,832,294	-		GFF3791	0.26	+2.0
3,832,321	-		GFF3791	0.27	+0.3
3,832,321	-		GFF3791	0.27	-2.0
3,832,326	-		GFF3791	0.27	-0.6
3,832,336	-		GFF3791	0.27	-0.2
3,832,411	+		GFF3791	0.30	+1.0
3,832,453	+		GFF3791	0.32	+1.1
3,832,471	-		GFF3791	0.33	-0.7
3,832,499	+		GFF3791	0.34	-0.8
3,832,499	+		GFF3791	0.34	-0.9
3,832,499	+		GFF3791	0.34	+1.1
3,832,507	-		GFF3791	0.34	-1.3
3,832,507	-		GFF3791	0.34	+0.5
3,832,509	+		GFF3791	0.34	+0.2
3,832,509	+		GFF3791	0.34	-0.2
3,832,522	-		GFF3791	0.35	-0.0
3,832,583	-		GFF3791	0.37	-0.8
3,832,605	+		GFF3791	0.38	+0.1
3,832,611	-		GFF3791	0.38	-0.8
3,832,623	+		GFF3791	0.39	+0.2
3,832,631	-		GFF3791	0.39	-0.8
3,832,646	-		GFF3791	0.39	-0.0
3,832,658	+		GFF3791	0.40	-0.3
3,832,658	+		GFF3791	0.40	-0.0
3,832,705	-		GFF3791	0.42	-1.8
3,832,705	-		GFF3791	0.42	-0.0
3,832,705	-		GFF3791	0.42	-0.0
3,832,705	-		GFF3791	0.42	-0.8
3,832,705	-		GFF3791	0.42	+0.4
3,832,719	+		GFF3791	0.42	-1.0
3,832,724	+		GFF3791	0.43	+0.4
3,832,724	+		GFF3791	0.43	+0.4
3,832,728	+		GFF3791	0.43	-1.3
3,832,735	+		GFF3791	0.43	-2.2
3,832,749	-		GFF3791	0.43	+0.2
3,832,759	-		GFF3791	0.44	+1.1
3,832,771	+		GFF3791	0.44	+0.1
3,832,772	+		GFF3791	0.44	-0.5
3,832,790	-		GFF3791	0.45	-0.2
3,832,805	-		GFF3791	0.46	-0.2
3,832,834	+		GFF3791	0.47	+1.5
3,832,842	-		GFF3791	0.47	-0.2
3,832,882	-		GFF3791	0.49	+1.3
3,832,882	-		GFF3791	0.49	-0.3
3,832,882	-		GFF3791	0.49	+1.2
3,832,886	+		GFF3791	0.49	-0.0
3,832,923	+		GFF3791	0.50	-0.7
3,832,923	-		GFF3791	0.50	+0.4
3,832,944	-		GFF3791	0.51	-1.1
3,832,944	-		GFF3791	0.51	-1.8
3,832,972	+		GFF3791	0.52	-0.9
3,832,986	+		GFF3791	0.53	-1.6
3,832,992	+		GFF3791	0.53	+0.6
3,833,038	+		GFF3791	0.55	-0.9
3,833,052	+		GFF3791	0.55	-0.3
3,833,060	-		GFF3791	0.56	-1.2
3,833,068	+		GFF3791	0.56	-2.4
3,833,075	+		GFF3791	0.56	-0.6
3,833,076	-		GFF3791	0.56	+1.0
3,833,076	-		GFF3791	0.56	+0.8
3,833,076	-		GFF3791	0.56	-2.4
3,833,082	-		GFF3791	0.56	-0.2
3,833,083	-		GFF3791	0.57	+0.1
3,833,083	-		GFF3791	0.57	-0.2
3,833,088	-		GFF3791	0.57	-0.2
3,833,160	+		GFF3791	0.60	-0.5
3,833,221	-		GFF3791	0.62	+0.4
3,833,221	-		GFF3791	0.62	-0.0
3,833,224	+		GFF3791	0.62	-0.5
3,833,226	-		GFF3791	0.62	-0.4
3,833,250	+		GFF3791	0.63	+0.8
3,833,250	+		GFF3791	0.63	-0.5
3,833,250	+		GFF3791	0.63	+1.4
3,833,250	+		GFF3791	0.63	-0.3
3,833,250	+		GFF3791	0.63	+0.2
3,833,250	+		GFF3791	0.63	+0.0
3,833,258	-		GFF3791	0.63	+0.1
3,833,258	-		GFF3791	0.63	-1.0
3,833,258	-		GFF3791	0.63	-1.9
3,833,260	+		GFF3791	0.63	+0.8
3,833,260	+		GFF3791	0.63	+0.8
3,833,268	-		GFF3791	0.64	-0.5
3,833,268	-		GFF3791	0.64	+1.2
3,833,268	-		GFF3791	0.64	-2.2
3,833,287	-		GFF3791	0.64	-1.3
3,833,305	+		GFF3791	0.65	-1.8
3,833,305	-		GFF3791	0.65	+0.2
3,833,305	-		GFF3791	0.65	+1.1
3,833,334	+		GFF3791	0.66	+0.7
3,833,346	+		GFF3791	0.67	-0.4
3,833,358	+		GFF3791	0.67	+2.8
3,833,366	-		GFF3791	0.68	-0.9
3,833,366	-		GFF3791	0.68	+0.3
3,833,389	+		GFF3791	0.68	-1.5
3,833,389	+		GFF3791	0.68	-1.3
3,833,390	+		GFF3791	0.68	-0.3
3,833,397	-		GFF3791	0.69	+0.1
3,833,408	-		GFF3791	0.69	-0.1
3,833,450	+		GFF3791	0.71	+0.4
3,833,450	+		GFF3791	0.71	-1.9
3,833,458	-		GFF3791	0.71	-1.9
3,833,492	-		GFF3791	0.72	-1.2
3,833,506	-		GFF3791	0.73	+0.6
3,833,511	-		GFF3791	0.73	-1.6
3,833,575	+		GFF3791	0.76	+0.5
3,833,575	+		GFF3791	0.76	-1.5
3,833,581	+		GFF3791	0.76	-1.3
3,833,583	-		GFF3791	0.76	-0.6
3,833,583	-		GFF3791	0.76	-0.9
3,833,598	+		GFF3791	0.77	+0.8
3,833,598	+		GFF3791	0.77	-1.1
3,833,598	+		GFF3791	0.77	-1.1
3,833,598	+		GFF3791	0.77	+1.4
3,833,621	+		GFF3791	0.77	-0.3
3,833,629	-		GFF3791	0.78	+0.8
3,833,644	+		GFF3791	0.78	+0.8
3,833,652	-		GFF3791	0.79	-1.3
3,833,652	-		GFF3791	0.79	+0.1
3,833,681	+		GFF3791	0.80	+0.6
3,833,709	+		GFF3791	0.81	-0.0
3,833,711	+		GFF3791	0.81	-0.2
3,833,717	-		GFF3791	0.81	+0.8
3,833,732	+		GFF3791	0.82	-0.9
3,833,735	+		GFF3791	0.82	-0.1
3,833,740	-		GFF3791	0.82	+0.1
3,833,743	-		GFF3791	0.82	+0.1
3,833,761	-		GFF3791	0.83	+2.4
3,833,774	-		GFF3791	0.83	+1.0
3,833,776	+		GFF3791	0.83	-0.3
3,833,782	+		GFF3791	0.84	-1.3
3,833,784	-		GFF3791	0.84	-1.0
3,833,786	+		GFF3791	0.84	-0.5
3,833,793	+		GFF3791	0.84	-1.8
3,833,794	-		GFF3791	0.84	-1.2
3,833,799	+		GFF3791	0.84	+1.0
3,833,799	+		GFF3791	0.84	+0.2
3,833,799	+		GFF3791	0.84	+1.0
3,833,807	-		GFF3791	0.85	+0.5
3,833,807	-		GFF3791	0.85	+1.6
3,833,809	+		GFF3791	0.85	-0.3
3,833,814	+		GFF3791	0.85	+0.0
3,833,821	+		GFF3791	0.85	+0.7
3,833,821	+		GFF3791	0.85	+0.6
3,833,829	-		GFF3791	0.86	-0.3
3,833,855	-		GFF3791	0.87	-0.2
3,833,859	+		GFF3791	0.87	-0.3
3,833,881	+		GFF3791	0.88	-0.8
3,833,881	+		GFF3791	0.88	-0.3
3,833,904	-		GFF3791	0.88	-0.2
3,833,913	+		GFF3791	0.89	-1.8
3,833,930	+		GFF3791	0.89	+1.4
3,833,931	-		GFF3791	0.90	+0.1
3,833,936	+		GFF3791	0.90	+0.7
3,833,936	+		GFF3791	0.90	-0.8
3,833,938	-		GFF3791	0.90	-0.6
3,833,951	+				-0.9
3,833,959	+				-0.8
3,833,959	-				+0.1
3,833,959	-				-0.3
3,833,959	-				-1.3
3,833,961	+				+0.9
3,833,966	+				-0.1
3,833,966	+				+0.5
3,833,967	+				-0.2
3,833,969	-				+0.6
3,833,979	-				-0.7
3,833,982	+				+0.4
3,833,985	-				+0.0
3,833,997	+				+0.5
3,834,002	+				-0.6
3,834,002	+				-0.2
3,834,002	+				-1.1
3,834,015	-				-0.5
3,834,018	+				+0.9
3,834,018	+				-0.9
3,834,023	+				+1.2
3,834,026	-				-0.1
3,834,026	-				-1.2
3,834,031	-				+0.7
3,834,243	+				-1.8
3,834,459	+				+0.5
3,834,467	-				+2.0
3,834,492	+				-2.0
3,834,495	-				-1.2
3,834,495	-				+0.1
3,834,498	+				-0.5
3,834,511	-				-0.7
3,834,531	+		GFF3792	0.13	-1.1
3,834,532	-		GFF3792	0.13	-0.6
3,834,532	-		GFF3792	0.13	-1.9
3,834,539	-		GFF3792	0.14	-0.8
3,834,539	-		GFF3792	0.14	+0.2
3,834,539	-		GFF3792	0.14	+0.2
3,834,551	-		GFF3792	0.16	+0.6
3,834,553	+		GFF3792	0.16	-2.3
3,834,560	+		GFF3792	0.17	-0.0
3,834,560	+		GFF3792	0.17	-1.4
3,834,597	-		GFF3792	0.23	-1.3
3,834,599	+		GFF3792	0.23	-0.5
3,834,604	+		GFF3792	0.24	+0.1
3,834,611	+		GFF3792	0.25	-1.5
3,834,611	+		GFF3792	0.25	+1.0
3,834,618	+		GFF3792	0.26	+1.0
3,834,619	+		GFF3792	0.27	-0.4
3,834,634	+		GFF3792	0.29	-1.3
3,834,641	-		GFF3792	0.30	-0.3
3,834,653	-		GFF3792	0.32	-0.1
3,834,653	-		GFF3792	0.32	+0.2
3,834,666	+		GFF3792	0.34	-0.9
3,834,666	+		GFF3792	0.34	-1.0
3,834,666	+		GFF3792	0.34	+0.8
3,834,668	-		GFF3792	0.34	+0.5
3,834,671	+		GFF3792	0.35	-1.4
3,834,671	+		GFF3792	0.35	+0.3
3,834,671	+		GFF3792	0.35	-1.4
3,834,674	-		GFF3792	0.35	-0.1
3,834,679	-		GFF3792	0.36	-1.0
3,834,679	-		GFF3792	0.36	-0.3
3,834,679	-		GFF3792	0.36	+0.6
3,834,679	-		GFF3792	0.36	+0.7
3,834,701	+		GFF3792	0.40	-0.0
3,834,701	+		GFF3792	0.40	-0.4
3,834,718	-		GFF3792	0.42	+0.4
3,834,771	-		GFF3792	0.51	-1.0
3,834,798	-		GFF3792	0.55	+0.4
3,834,800	+		GFF3792	0.56	-0.6
3,834,803	-		GFF3792	0.56	+0.5
3,834,824	+		GFF3792	0.59	-1.0
3,834,824	+		GFF3792	0.59	-0.9
3,834,832	-		GFF3792	0.61	-0.2
3,834,832	-		GFF3792	0.61	+0.4
3,834,840	+		GFF3792	0.62	+0.8
3,834,848	-		GFF3792	0.63	-0.3
3,834,944	+		GFF3792	0.78	-0.4
3,834,964	+		GFF3792	0.82	+0.4
3,834,989	+		GFF3792	0.86	+0.5
3,834,989	+		GFF3792	0.86	-0.6
3,835,007	+		GFF3792	0.89	-0.9
3,835,029	+				+0.8
3,835,051	+				+0.3
3,835,094	-				-0.5
3,835,094	-				+1.1
3,835,097	+				-1.0
3,835,105	-				-0.5
3,835,105	-				-0.7
3,835,105	-				+0.5
3,835,112	+				-0.5
3,835,112	+				+0.2
3,835,152	-				-0.9
3,835,161	-				+1.1
3,835,187	+				-2.4