Strain Fitness in Sphingobium sp. HT1-2 around GFF3760

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,797,376	+		GFF3759	0.24	-0.7
3,797,392	+		GFF3759	0.25	-0.6
3,797,431	+		GFF3759	0.28	-1.8
3,797,432	+		GFF3759	0.28	-1.9
3,797,432	+		GFF3759	0.28	-1.1
3,797,461	-		GFF3759	0.30	-0.5
3,797,470	-		GFF3759	0.31	-1.7
3,797,477	-		GFF3759	0.32	-1.2
3,797,499	+		GFF3759	0.33	-0.7
3,797,508	+		GFF3759	0.34	+0.3
3,797,508	+		GFF3759	0.34	+0.4
3,797,509	+		GFF3759	0.34	+0.2
3,797,509	+		GFF3759	0.34	+0.2
3,797,509	-		GFF3759	0.34	-1.2
3,797,514	+		GFF3759	0.35	+1.3
3,797,514	+		GFF3759	0.35	+1.3
3,797,515	-		GFF3759	0.35	-0.4
3,797,517	-		GFF3759	0.35	+0.4
3,797,517	-		GFF3759	0.35	-1.0
3,797,517	-		GFF3759	0.35	-2.4
3,797,517	-		GFF3759	0.35	-0.3
3,797,517	-		GFF3759	0.35	+0.1
3,797,519	+		GFF3759	0.35	-2.2
3,797,521	+		GFF3759	0.35	+1.2
3,797,522	-		GFF3759	0.35	-0.7
3,797,522	-		GFF3759	0.35	-0.4
3,797,522	-		GFF3759	0.35	-0.3
3,797,522	-		GFF3759	0.35	-0.6
3,797,522	-		GFF3759	0.35	-1.2
3,797,522	-		GFF3759	0.35	+1.7
3,797,522	-		GFF3759	0.35	-0.6
3,797,522	-		GFF3759	0.35	-1.3
3,797,522	-		GFF3759	0.35	+1.3
3,797,522	-		GFF3759	0.35	-0.4
3,797,522	-		GFF3759	0.35	-0.6
3,797,526	+		GFF3759	0.35	-1.2
3,797,527	-		GFF3759	0.36	+0.3
3,797,534	-		GFF3759	0.36	-0.9
3,797,552	+		GFF3759	0.38	-0.7
3,797,552	+		GFF3759	0.38	-2.0
3,797,553	-		GFF3759	0.38	+0.3
3,797,560	-		GFF3759	0.38	-0.7
3,797,560	-		GFF3759	0.38	+0.3
3,797,562	+		GFF3759	0.38	+0.7
3,797,565	-		GFF3759	0.39	-0.6
3,797,567	+		GFF3759	0.39	-0.5
3,797,567	+		GFF3759	0.39	+0.5
3,797,575	-		GFF3759	0.39	-0.4
3,797,587	+		GFF3759	0.40	-1.1
3,797,596	-		GFF3759	0.41	+0.3
3,797,597	+		GFF3759	0.41	-0.4
3,797,597	+		GFF3759	0.41	+1.4
3,797,598	+		GFF3759	0.41	-0.8
3,797,598	+		GFF3759	0.41	-0.1
3,797,605	-		GFF3759	0.42	-1.6
3,797,606	-		GFF3759	0.42	+0.3
3,797,606	-		GFF3759	0.42	-1.3
3,797,606	-		GFF3759	0.42	-1.3
3,797,606	-		GFF3759	0.42	+1.6
3,797,606	-		GFF3759	0.42	-0.2
3,797,606	-		GFF3759	0.42	+0.1
3,797,628	-		GFF3759	0.43	-0.7
3,797,628	-		GFF3759	0.43	-0.6
3,797,638	-		GFF3759	0.44	-0.1
3,797,659	+		GFF3759	0.46	+0.8
3,797,710	+		GFF3759	0.50	-1.8
3,797,720	+		GFF3759	0.51	+0.2
3,797,734	+		GFF3759	0.52	+0.8
3,797,734	+		GFF3759	0.52	-0.3
3,797,734	+		GFF3759	0.52	-1.5
3,797,734	+		GFF3759	0.52	+0.4
3,797,734	+		GFF3759	0.52	-0.8
3,797,734	+		GFF3759	0.52	+0.2
3,797,742	-		GFF3759	0.52	-1.6
3,797,742	-		GFF3759	0.52	-1.7
3,797,742	-		GFF3759	0.52	-0.7
3,797,742	-		GFF3759	0.52	+0.1
3,797,742	-		GFF3759	0.52	+1.5
3,797,742	-		GFF3759	0.52	+0.4
3,797,742	-		GFF3759	0.52	+0.3
3,797,742	-		GFF3759	0.52	+0.3
3,797,742	-		GFF3759	0.52	-0.6
3,797,742	-		GFF3759	0.52	-0.3
3,797,742	-		GFF3759	0.52	-0.7
3,797,749	+		GFF3759	0.53	+0.5
3,797,756	+		GFF3759	0.53	+0.1
3,797,756	+		GFF3759	0.53	+0.4
3,797,757	-		GFF3759	0.53	+1.0
3,797,764	-		GFF3759	0.54	-0.1
3,797,768	+		GFF3759	0.54	-0.6
3,797,783	+		GFF3759	0.55	+1.0
3,797,783	-		GFF3759	0.55	-1.5
3,797,792	+		GFF3759	0.56	+0.6
3,797,792	+		GFF3759	0.56	+0.3
3,797,792	+		GFF3759	0.56	-1.9
3,797,792	+		GFF3759	0.56	-0.8
3,797,792	+		GFF3759	0.56	+0.7
3,797,800	-		GFF3759	0.57	-1.1
3,797,800	-		GFF3759	0.57	-0.8
3,797,800	-		GFF3759	0.57	-0.4
3,797,820	-		GFF3759	0.58	+1.0
3,797,830	+		GFF3759	0.59	+0.7
3,797,850	+		GFF3759	0.61	-0.9
3,797,888	+		GFF3759	0.63	-0.4
3,797,912	+		GFF3759	0.65	+0.3
3,797,920	-		GFF3759	0.66	-0.9
3,797,964	+		GFF3759	0.69	-0.6
3,797,964	+		GFF3759	0.69	-1.4
3,798,042	-		GFF3759	0.75	-0.9
3,798,049	+		GFF3759	0.76	-0.2
3,798,052	+		GFF3759	0.76	+0.9
3,798,054	+		GFF3759	0.76	-0.4
3,798,059	+		GFF3759	0.77	-0.3
3,798,067	-		GFF3759	0.77	-0.8
3,798,067	-		GFF3759	0.77	-2.6
3,798,083	+		GFF3759	0.79	+1.2
3,798,094	+		GFF3759	0.79	+0.4
3,798,102	-		GFF3759	0.80	-0.9
3,798,102	-		GFF3759	0.80	-0.6
3,798,154	-		GFF3759	0.84	-0.6
3,798,182	+		GFF3759	0.86	-1.1
3,798,182	+		GFF3759	0.86	-0.7
3,798,185	-		GFF3759	0.86	+0.7
3,798,187	+		GFF3759	0.87	-1.7
3,798,190	-		GFF3759	0.87	-0.6
3,798,215	+		GFF3759	0.89	-0.6
3,798,221	-		GFF3759	0.89	-1.8
3,798,281	+				+0.3
3,798,289	-				-2.1
3,798,308	+				+1.1
3,798,311	-				-0.4
3,798,311	-				+0.3
3,798,325	-				+0.5
3,798,331	-				+0.3
3,798,340	+				-0.9
3,798,367	+				+0.1
3,798,369	-				+0.6
3,798,380	-				-0.7
3,798,381	-				-1.2
3,798,395	-				+0.6
3,798,401	+				+0.2
3,798,414	-				-0.8
3,798,414	-				-0.9
3,798,427	+				-0.1
3,798,446	+				-0.6
3,798,446	+				-1.8
3,798,454	-				+0.8
3,798,458	-				-0.2
3,798,467	+		GFF3760	0.11	+0.0
3,798,480	-		GFF3760	0.12	-1.1
3,798,500	-		GFF3760	0.15	+0.0
3,798,511	-		GFF3760	0.16	-1.2
3,798,517	+		GFF3760	0.17	+0.3
3,798,562	+		GFF3760	0.22	-1.3
3,798,573	+		GFF3760	0.23	-1.7
3,798,573	+		GFF3760	0.23	-0.6
3,798,573	+		GFF3760	0.23	-0.4
3,798,573	+		GFF3760	0.23	-0.0
3,798,573	+		GFF3760	0.23	-0.4
3,798,573	+		GFF3760	0.23	-1.0
3,798,581	-		GFF3760	0.24	-0.3
3,798,581	-		GFF3760	0.24	-1.2
3,798,581	-		GFF3760	0.24	-1.2
3,798,581	-		GFF3760	0.24	-0.9
3,798,581	-		GFF3760	0.24	+1.4
3,798,581	-		GFF3760	0.24	+0.6
3,798,583	+		GFF3760	0.25	-1.1
3,798,590	-		GFF3760	0.25	-0.0
3,798,591	-		GFF3760	0.26	-1.5
3,798,592	+		GFF3760	0.26	-0.4
3,798,592	+		GFF3760	0.26	+0.9
3,798,592	+		GFF3760	0.26	+0.6
3,798,600	-		GFF3760	0.27	+0.5
3,798,600	-		GFF3760	0.27	+0.1
3,798,602	+		GFF3760	0.27	+1.1
3,798,610	-		GFF3760	0.28	-2.8
3,798,612	+		GFF3760	0.28	-0.1
3,798,619	-		GFF3760	0.29	+1.0
3,798,619	-		GFF3760	0.29	-1.9
3,798,627	-		GFF3760	0.30	-0.6
3,798,648	-		GFF3760	0.32	-1.4
3,798,650	+		GFF3760	0.33	-1.3
3,798,651	+		GFF3760	0.33	-1.4
3,798,652	+		GFF3760	0.33	-1.4
3,798,658	-		GFF3760	0.33	-0.6
3,798,680	+		GFF3760	0.36	-1.2
3,798,680	+		GFF3760	0.36	+1.1
3,798,685	+		GFF3760	0.37	+0.0
3,798,685	+		GFF3760	0.37	+0.7
3,798,688	-		GFF3760	0.37	+0.1
3,798,688	-		GFF3760	0.37	-0.3
3,798,708	+		GFF3760	0.39	+0.1
3,798,725	+		GFF3760	0.41	+0.1
3,798,725	+		GFF3760	0.41	-0.9
3,798,725	+		GFF3760	0.41	+0.1
3,798,730	+		GFF3760	0.42	-0.4
3,798,730	+		GFF3760	0.42	-1.2
3,798,731	+		GFF3760	0.42	-0.9
3,798,731	+		GFF3760	0.42	+0.6
3,798,731	+		GFF3760	0.42	-1.1
3,798,732	-		GFF3760	0.42	-0.4
3,798,732	-		GFF3760	0.42	-0.2
3,798,733	-		GFF3760	0.42	+1.6
3,798,739	-		GFF3760	0.43	+0.7
3,798,739	-		GFF3760	0.43	+0.1
3,798,808	+		GFF3760	0.51	-0.7
3,798,808	+		GFF3760	0.51	-0.4
3,798,816	-		GFF3760	0.52	-0.8
3,798,816	-		GFF3760	0.52	-0.3
3,798,844	-		GFF3760	0.55	+0.4
3,798,866	+		GFF3760	0.58	-1.0
3,798,874	-		GFF3760	0.59	-1.2
3,798,874	-		GFF3760	0.59	+0.4
3,798,876	+		GFF3760	0.59	+0.1
3,798,883	+		GFF3760	0.60	-0.3
3,798,916	+		GFF3760	0.64	-0.7
3,798,916	+		GFF3760	0.64	+0.3
3,798,924	-		GFF3760	0.65	+1.4
3,798,924	-		GFF3760	0.65	-0.4
3,798,924	-		GFF3760	0.65	+0.8
3,798,942	+		GFF3760	0.67	-1.7
3,798,950	+		GFF3760	0.68	-0.4
3,798,958	+		GFF3760	0.69	-1.0
3,798,958	-		GFF3760	0.69	+0.7
3,798,958	-		GFF3760	0.69	+2.1
3,798,958	-		GFF3760	0.69	-1.2
3,798,959	-		GFF3760	0.69	+0.4
3,798,966	-		GFF3760	0.70	-1.4
3,798,979	+		GFF3760	0.71	+0.7
3,798,979	+		GFF3760	0.71	-0.2
3,798,985	-		GFF3760	0.72	-2.2
3,798,985	-		GFF3760	0.72	+1.1
3,799,010	+		GFF3760	0.75	-0.7
3,799,028	-		GFF3760	0.77	-0.9
3,799,077	-		GFF3760	0.83	-1.1
3,799,100	-		GFF3760	0.86	-0.4
3,799,161	+				-0.4
3,799,166	+				-0.4
3,799,166	+				-0.4
3,799,174	-				-0.6
3,799,174	-				+0.6
3,799,174	-				+0.6
3,799,182	-				+0.6
3,799,195	-				+0.1
3,799,221	+				+0.0
3,799,221	+				-0.3
3,799,272	-				+1.0
3,799,287	-				+0.1
3,799,316	-				-0.3
3,799,329	+				-0.0
3,799,329	+				-0.3
3,799,329	+				-0.4
3,799,329	+				-0.4
3,799,329	+				-0.5
3,799,337	-				-2.0
3,799,337	-				-0.4
3,799,337	-				-1.6
3,799,337	-				+1.9
3,799,337	-				-0.5
3,799,339	+				+0.6
3,799,347	-				-2.4
3,799,347	-				+0.4
3,799,357	-		GFF3761	0.10	-0.4
3,799,385	-		GFF3761	0.15	-0.1
3,799,385	-		GFF3761	0.15	-0.0
3,799,399	+		GFF3761	0.18	+0.1
3,799,405	+		GFF3761	0.19	-0.7
3,799,408	-		GFF3761	0.20	+1.0
3,799,413	-		GFF3761	0.20	-0.9
3,799,437	+		GFF3761	0.25	-0.3
3,799,439	+		GFF3761	0.25	+0.6
3,799,447	-		GFF3761	0.27	-0.2
3,799,454	+		GFF3761	0.28	-0.6
3,799,454	+		GFF3761	0.28	+0.4
3,799,454	+		GFF3761	0.28	-1.4
3,799,454	+		GFF3761	0.28	-0.5
3,799,454	+		GFF3761	0.28	-1.3
3,799,454	+		GFF3761	0.28	-0.8
3,799,454	+		GFF3761	0.28	-0.3
3,799,462	-		GFF3761	0.30	+1.6
3,799,462	-		GFF3761	0.30	-1.4
3,799,462	-		GFF3761	0.30	+1.7
3,799,462	-		GFF3761	0.30	-1.2
3,799,472	+		GFF3761	0.31	-1.7
3,799,472	+		GFF3761	0.31	+0.8
3,799,472	-		GFF3761	0.31	-1.2
3,799,480	-		GFF3761	0.33	-0.0
3,799,480	-		GFF3761	0.33	+1.3
3,799,487	+		GFF3761	0.34	+0.5
3,799,487	+		GFF3761	0.34	+0.1
3,799,487	+		GFF3761	0.34	-0.8
3,799,487	+		GFF3761	0.34	-0.7
3,799,487	+		GFF3761	0.34	-0.7
3,799,495	-		GFF3761	0.36	+0.6
3,799,495	-		GFF3761	0.36	-0.9
3,799,495	-		GFF3761	0.36	-0.6
3,799,495	-		GFF3761	0.36	+1.3
3,799,495	-		GFF3761	0.36	+0.6
3,799,495	-		GFF3761	0.36	-1.4
3,799,512	-		GFF3761	0.39	-0.6
3,799,521	+		GFF3761	0.41	+0.6
3,799,521	+		GFF3761	0.41	+0.1
3,799,521	+		GFF3761	0.41	-1.7
3,799,521	+		GFF3761	0.41	-1.5
3,799,521	+		GFF3761	0.41	-1.0
3,799,521	+		GFF3761	0.41	-1.4
3,799,521	+		GFF3761	0.41	+0.1
3,799,528	+		GFF3761	0.42	-0.6
3,799,529	-		GFF3761	0.42	-0.3
3,799,529	-		GFF3761	0.42	-1.7
3,799,529	-		GFF3761	0.42	-0.6
3,799,529	-		GFF3761	0.42	-0.7
3,799,560	+		GFF3761	0.48	-2.1
3,799,563	+		GFF3761	0.48	-0.2
3,799,596	+		GFF3761	0.55	+1.1
3,799,596	-		GFF3761	0.55	-1.2
3,799,604	-		GFF3761	0.56	+1.0
3,799,604	-		GFF3761	0.56	-1.3
3,799,618	-		GFF3761	0.59	-1.2
3,799,618	-		GFF3761	0.59	-0.4
3,799,688	-		GFF3761	0.72	-1.2
3,799,698	-		GFF3761	0.74	-0.9
3,799,698	-		GFF3761	0.74	-0.9
3,799,698	-		GFF3761	0.74	+0.8
3,799,746	+		GFF3761	0.82	-2.3
3,799,746	+		GFF3761	0.82	-1.2
3,799,754	-		GFF3761	0.84	-1.6
3,799,765	+		GFF3761	0.86	-1.1
3,799,770	+		GFF3761	0.87	-0.6
3,799,789	+				+0.3
3,799,792	-				+0.1
3,799,794	+				-0.3
3,799,796	+				+1.7
3,799,801	+				-1.6
3,799,801	+				-0.1
3,799,801	+				-1.1
3,799,807	-				-1.9
3,799,809	-				+0.3
3,799,809	-				-0.4
3,799,816	+				-1.5
3,799,847	-				-1.4
3,799,907	+				-0.4
3,799,907	+				+0.2
3,799,915	-				-0.9
3,799,959	-				-0.4
3,799,975	-				-0.0
3,799,976	-				+0.2
3,799,978	+				+0.6
3,800,031	+		GFF3762	0.11	+1.7
3,800,034	-		GFF3762	0.11	-0.9
3,800,034	-		GFF3762	0.11	-0.4
3,800,052	+		GFF3762	0.13	+0.4
3,800,060	-		GFF3762	0.14	-0.1
3,800,062	+		GFF3762	0.14	+0.2
3,800,062	+		GFF3762	0.14	-0.2
3,800,062	+		GFF3762	0.14	-1.8
3,800,062	+		GFF3762	0.14	-0.4
3,800,062	+		GFF3762	0.14	-0.0
3,800,065	-		GFF3762	0.14	+0.3
3,800,065	-		GFF3762	0.14	-0.7
3,800,070	-		GFF3762	0.15	+0.1
3,800,079	-		GFF3762	0.16	-2.6
3,800,079	-		GFF3762	0.16	-1.9
3,800,084	-		GFF3762	0.16	-0.8
3,800,084	-		GFF3762	0.16	-0.9
3,800,097	+		GFF3762	0.17	-0.9
3,800,097	+		GFF3762	0.17	-0.7
3,800,097	+		GFF3762	0.17	+0.1
3,800,097	+		GFF3762	0.17	-0.3
3,800,102	+		GFF3762	0.18	-0.6
3,800,102	+		GFF3762	0.18	+0.6
3,800,102	+		GFF3762	0.18	-1.8
3,800,102	+		GFF3762	0.18	-1.7
3,800,105	-		GFF3762	0.18	-1.3
3,800,105	-		GFF3762	0.18	+1.7
3,800,105	-		GFF3762	0.18	-1.3
3,800,105	-		GFF3762	0.18	+0.3
3,800,105	-		GFF3762	0.18	+0.6
3,800,105	-		GFF3762	0.18	-0.1
3,800,122	+		GFF3762	0.20	-1.3
3,800,122	+		GFF3762	0.20	-1.4
3,800,122	+		GFF3762	0.20	-0.9
3,800,122	+		GFF3762	0.20	-2.6
3,800,122	+		GFF3762	0.20	-0.9
3,800,122	+		GFF3762	0.20	-0.2
3,800,130	-		GFF3762	0.20	-1.4
3,800,130	-		GFF3762	0.20	-1.5
3,800,142	-		GFF3762	0.22	+0.9
3,800,142	-		GFF3762	0.22	-1.3
3,800,184	+		GFF3762	0.25	+1.2
3,800,191	+		GFF3762	0.26	-1.2
3,800,196	+		GFF3762	0.27	-1.4