Strain Fitness in Sphingobium sp. HT1-2 around GFF3752

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,791,471	+		GFF3750	0.73	+0.6
3,791,491	-		GFF3750	0.76	+0.0
3,791,493	+		GFF3750	0.77	+0.4
3,791,493	+		GFF3750	0.77	-1.0
3,791,498	+		GFF3750	0.78	+0.6
3,791,513	-		GFF3750	0.80	-0.8
3,791,517	+		GFF3750	0.80	-0.7
3,791,517	+		GFF3750	0.80	+0.9
3,791,522	+		GFF3750	0.81	-1.2
3,791,540	+		GFF3750	0.84	+0.6
3,791,541	+		GFF3750	0.84	+1.3
3,791,561	-		GFF3750	0.87	-0.9
3,791,580	+				-0.9
3,791,610	+				+0.4
3,791,610	+				-0.3
3,791,626	+				+1.2
3,791,634	-				+0.7
3,791,636	+				-1.8
3,791,643	+				+0.0
3,791,643	+				-1.2
3,791,651	-				+0.1
3,791,653	+				-0.2
3,791,653	+				+1.9
3,791,653	+				-0.7
3,791,658	+				+0.6
3,791,658	+				-0.8
3,791,658	+				-0.7
3,791,658	+				-0.9
3,791,661	-				-0.9
3,791,661	-				-0.9
3,791,661	-				-1.6
3,791,666	-				-1.6
3,791,666	-				-1.0
3,791,695	-				-1.7
3,791,718	+				-0.6
3,791,742	+		GFF3751	0.12	-1.8
3,791,776	+		GFF3751	0.17	-1.3
3,791,784	-		GFF3751	0.19	-0.7
3,791,802	-		GFF3751	0.21	+1.3
3,791,820	+		GFF3751	0.24	+0.8
3,791,837	+		GFF3751	0.26	-1.3
3,791,837	+		GFF3751	0.26	-1.8
3,791,842	+		GFF3751	0.27	-1.2
3,791,842	+		GFF3751	0.27	-0.3
3,791,842	+		GFF3751	0.27	-0.7
3,791,850	-		GFF3751	0.28	-1.0
3,791,850	-		GFF3751	0.28	-0.3
3,791,850	-		GFF3751	0.28	+0.7
3,791,850	-		GFF3751	0.28	+0.8
3,791,850	-		GFF3751	0.28	+0.0
3,791,850	-		GFF3751	0.28	-1.3
3,791,873	+		GFF3751	0.31	-0.3
3,791,878	+		GFF3751	0.32	-0.9
3,791,908	-		GFF3751	0.36	-1.8
3,791,908	-		GFF3751	0.36	-1.1
3,791,924	+		GFF3751	0.39	-0.5
3,791,932	-		GFF3751	0.40	+0.5
3,791,980	+		GFF3751	0.47	-0.3
3,791,980	+		GFF3751	0.47	-1.1
3,791,980	+		GFF3751	0.47	-1.0
3,791,980	+		GFF3751	0.47	-2.2
3,791,986	+		GFF3751	0.48	-0.5
3,791,986	+		GFF3751	0.48	-0.8
3,791,986	+		GFF3751	0.48	-0.1
3,791,986	+		GFF3751	0.48	+0.1
3,791,986	+		GFF3751	0.48	+0.7
3,791,988	-		GFF3751	0.48	-0.1
3,791,988	-		GFF3751	0.48	-0.7
3,791,988	-		GFF3751	0.48	-0.8
3,791,993	-		GFF3751	0.49	+0.3
3,791,994	-		GFF3751	0.49	+0.2
3,791,994	-		GFF3751	0.49	-1.4
3,792,005	+		GFF3751	0.50	-0.1
3,792,010	+		GFF3751	0.51	-1.0
3,792,010	+		GFF3751	0.51	-1.3
3,792,010	+		GFF3751	0.51	-1.3
3,792,013	-		GFF3751	0.51	-0.4
3,792,013	-		GFF3751	0.51	-1.1
3,792,015	-		GFF3751	0.52	-2.0
3,792,032	-		GFF3751	0.54	-0.2
3,792,050	+		GFF3751	0.57	-1.0
3,792,058	-		GFF3751	0.58	-0.6
3,792,067	+		GFF3751	0.59	+0.4
3,792,114	-		GFF3751	0.66	-1.3
3,792,116	-		GFF3751	0.66	-1.7
3,792,143	+		GFF3751	0.70	+0.8
3,792,155	+		GFF3751	0.72	+0.9
3,792,158	-		GFF3751	0.72	+0.2
3,792,160	+		GFF3751	0.73	-0.8
3,792,160	+		GFF3751	0.73	+0.5
3,792,160	+		GFF3751	0.73	+0.2
3,792,160	+		GFF3751	0.73	-1.7
3,792,160	+		GFF3751	0.73	-1.2
3,792,163	-		GFF3751	0.73	-1.2
3,792,168	-		GFF3751	0.74	-0.4
3,792,168	-		GFF3751	0.74	-1.7
3,792,168	-		GFF3751	0.74	+0.1
3,792,168	-		GFF3751	0.74	+0.3
3,792,168	-		GFF3751	0.74	-1.3
3,792,168	-		GFF3751	0.74	+0.9
3,792,168	-		GFF3751	0.74	-0.2
3,792,186	+		GFF3751	0.76	-0.4
3,792,199	-		GFF3751	0.78	-0.5
3,792,214	+		GFF3751	0.80	-0.4
3,792,219	+		GFF3751	0.81	-0.7
3,792,225	+		GFF3751	0.82	-0.2
3,792,227	-		GFF3751	0.82	-1.8
3,792,227	-		GFF3751	0.82	-1.0
3,792,227	-		GFF3751	0.82	+0.6
3,792,232	-		GFF3751	0.83	+0.3
3,792,266	-		GFF3751	0.88	-0.3
3,792,321	+				+0.0
3,792,321	+				-0.6
3,792,324	-				+0.7
3,792,329	-				+0.6
3,792,329	-				-0.2
3,792,329	-				-2.1
3,792,329	-				-0.4
3,792,329	-				+0.6
3,792,329	-				+0.7
3,792,329	-				-1.8
3,792,340	-				-0.4
3,792,360	-				-0.8
3,792,372	+				+0.4
3,792,380	-				+0.4
3,792,399	+				+0.5
3,792,419	-				-1.7
3,792,421	-				-0.1
3,792,426	+				+1.1
3,792,449	+				+0.4
3,792,494	+		GFF3752	0.14	-1.2
3,792,502	-		GFF3752	0.17	+0.2
3,792,505	-		GFF3752	0.18	-1.1
3,792,511	+		GFF3752	0.20	-0.9
3,792,519	-		GFF3752	0.23	-0.3
3,792,519	-		GFF3752	0.23	+1.0
3,792,519	-		GFF3752	0.23	-0.2
3,792,519	-		GFF3752	0.23	-0.3
3,792,521	+		GFF3752	0.23	+0.5
3,792,524	+		GFF3752	0.24	-0.8
3,792,524	+		GFF3752	0.24	+1.1
3,792,537	-		GFF3752	0.29	-0.9
3,792,552	+		GFF3752	0.34	-0.5
3,792,560	-		GFF3752	0.37	-0.0
3,792,624	+		GFF3752	0.59	+0.1
3,792,632	+		GFF3752	0.62	-0.5
3,792,634	+		GFF3752	0.62	+1.4
3,792,634	-		GFF3752	0.62	+0.6
3,792,637	+		GFF3752	0.64	-0.5
3,792,640	-		GFF3752	0.65	-0.1
3,792,673	+		GFF3752	0.76	-1.4
3,792,708	+		GFF3752	0.88	+0.6
3,792,716	+				-1.6
3,792,716	-				-1.8
3,792,724	-				+0.5
3,792,724	-				+1.5
3,792,724	-				+0.0
3,792,736	-				-0.7
3,792,736	-				-0.3
3,792,750	+				-0.1
3,792,750	+				+0.6
3,792,750	+				+0.9
3,792,766	-				-1.0
3,792,814	+				-1.3
3,792,822	-				-0.3
3,792,824	+				-0.7
3,792,824	+				-0.2
3,792,832	-				-0.6
3,792,837	+				-1.0
3,792,838	-				+0.0
3,792,858	-				+2.3
3,793,498	+				+0.0
3,793,498	+				-1.9
3,793,499	-				-0.3
3,793,499	-				-0.5
3,793,499	-				+1.5
3,793,515	+				-1.7
3,793,515	+				-1.1
3,793,515	+				+0.2
3,793,515	+				-1.6
3,793,515	+				-0.8
3,793,520	+				-1.3
3,793,523	-				-0.7
3,793,523	-				+0.0
3,793,523	-				-0.7
3,793,523	-				+0.5
3,793,544	+				-0.5
3,793,559	+				+0.5
3,793,564	+				+1.1
3,793,564	+				+0.9
3,793,564	+				+0.2
3,793,564	+				-0.8
3,793,564	+				+0.5
3,793,564	+				+0.1
3,793,564	+				-1.0
3,793,564	+				-1.0
3,793,564	+				-0.6
3,793,564	+				+0.7
3,793,564	+				+0.0
3,793,564	+				-0.5
3,793,567	-				-0.2
3,793,569	+				+1.4
3,793,569	+				-0.2
3,793,569	+				+1.5
3,793,569	+				+0.3
3,793,570	+				-0.8
3,793,572	-				+0.3
3,793,572	-				-2.0
3,793,572	-				+1.3
3,793,572	-				+0.0
3,793,576	+				-1.6
3,793,576	+				+0.5
3,793,576	+				+0.8
3,793,577	-				-0.3
3,793,577	-				-1.2
3,793,577	-				-0.9
3,793,577	-				-1.2
3,793,577	-				+0.2
3,793,577	-				-1.8
3,793,584	-				+1.1
3,793,584	-				+0.8
3,793,584	-				-0.4
3,793,584	-				+0.5
3,793,584	-				+0.1
3,793,584	-				-1.0
3,793,616	-				-0.5
3,793,635	+				-0.9
3,793,656	+				-1.7
3,793,661	-				-1.3
3,793,661	-				-1.3
3,793,669	+		GFF3754	0.11	-0.6
3,793,674	+		GFF3754	0.11	-0.5
3,793,674	-		GFF3754	0.11	-0.3
3,793,691	+		GFF3754	0.13	+1.0
3,793,699	-		GFF3754	0.14	+0.3
3,793,725	+		GFF3754	0.18	+1.5