Strain Fitness in Sphingobium sp. HT1-2 around GFF3746

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,787,609	+				-2.4
3,787,617	-				-0.6
3,787,617	-				-0.7
3,787,626	+				-1.0
3,787,626	+				+0.7
3,787,634	-				-0.4
3,787,647	+				-1.1
3,787,659	-				-1.1
3,787,666	+				-0.4
3,787,683	-				-0.5
3,787,683	-				-0.2
3,787,684	-				-0.0
3,787,694	-				+0.6
3,787,699	+				-0.0
3,787,699	+				-0.9
3,787,699	+				-1.7
3,787,699	+				-1.7
3,787,709	+				+0.1
3,787,734	+				+0.6
3,787,742	-				+0.7
3,787,742	-				-0.9
3,787,748	+				-0.4
3,787,748	-				+0.5
3,787,750	+				-1.2
3,787,750	+				+1.0
3,787,756	-				+0.6
3,787,830	+				-0.7
3,787,854	+		GFF3746	0.11	-0.6
3,787,854	+		GFF3746	0.11	-1.0
3,787,854	+		GFF3746	0.11	-1.0
3,787,862	-		GFF3746	0.11	-0.8
3,787,863	-		GFF3746	0.12	-1.9
3,787,863	-		GFF3746	0.12	-0.9
3,787,863	-		GFF3746	0.12	-0.9
3,787,867	+		GFF3746	0.12	-1.0
3,787,868	-		GFF3746	0.12	-0.3
3,787,879	-		GFF3746	0.13	-2.4
3,787,891	+		GFF3746	0.15	-1.8
3,787,902	+		GFF3746	0.16	-0.8
3,787,984	+		GFF3746	0.25	-0.8
3,788,007	+		GFF3746	0.27	-1.2
3,788,007	+		GFF3746	0.27	-1.4
3,788,054	-		GFF3746	0.32	-0.7
3,788,061	-		GFF3746	0.33	-0.9
3,788,068	+		GFF3746	0.34	-0.9
3,788,153	+		GFF3746	0.43	-1.4
3,788,154	+		GFF3746	0.43	-1.4
3,788,154	+		GFF3746	0.43	-1.4
3,788,154	+		GFF3746	0.43	-1.5
3,788,154	+		GFF3746	0.43	-1.1
3,788,162	-		GFF3746	0.44	-1.2
3,788,181	+		GFF3746	0.46	-1.8
3,788,182	+		GFF3746	0.46	-0.6
3,788,211	-		GFF3746	0.49	-1.4
3,788,228	+		GFF3746	0.51	-0.9
3,788,230	-		GFF3746	0.51	-1.6
3,788,236	-		GFF3746	0.52	-1.6
3,788,236	-		GFF3746	0.52	-2.2
3,788,284	-		GFF3746	0.57	-0.9
3,788,309	-		GFF3746	0.60	-1.6
3,788,316	-		GFF3746	0.60	-1.8
3,788,322	+		GFF3746	0.61	-0.9
3,788,327	+		GFF3746	0.62	-0.7
3,788,330	-		GFF3746	0.62	-0.6
3,788,332	+		GFF3746	0.62	-1.7
3,788,358	+		GFF3746	0.65	-0.9
3,788,372	+		GFF3746	0.66	-1.1
3,788,377	+		GFF3746	0.67	-1.2
3,788,378	+		GFF3746	0.67	-1.1
3,788,385	-		GFF3746	0.68	-0.4
3,788,395	+		GFF3746	0.69	-1.3
3,788,427	+		GFF3746	0.72	-1.2
3,788,447	-		GFF3746	0.75	-0.7
3,788,449	+		GFF3746	0.75	-1.3
3,788,449	+		GFF3746	0.75	-0.9
3,788,449	+		GFF3746	0.75	-0.6
3,788,449	+		GFF3746	0.75	-1.7
3,788,449	+		GFF3746	0.75	-1.1
3,788,449	+		GFF3746	0.75	-0.4
3,788,452	-		GFF3746	0.75	-1.2
3,788,457	-		GFF3746	0.76	+0.4
3,788,457	-		GFF3746	0.76	-0.7
3,788,567	+		GFF3746	0.87	-1.7
3,788,589	+		GFF3746	0.90	-1.3
3,788,597	+				-3.0
3,788,597	-				-1.7
3,788,618	-				-0.8
3,788,618	-				-1.3
3,788,618	-				-0.9
3,788,618	-				-1.2
3,788,620	-				+0.1
3,788,621	+				-0.8
3,788,629	-				-0.6
3,788,636	-				-0.6
3,788,653	+				-0.4
3,788,653	+				-0.6
3,788,658	+				-0.2
3,788,658	+				-0.0
3,788,661	-				-2.2
3,788,661	-				-1.2
3,788,661	-				-0.3
3,788,661	-				-0.3
3,788,666	-				-0.3
3,788,666	-				-0.7
3,788,666	-				-1.1
3,788,676	+				-0.3
3,788,676	+				-1.7
3,788,676	+				+0.5
3,788,677	+				-0.9
3,788,684	-				-0.1
3,788,684	-				-0.8
3,788,684	-				+2.1
3,788,685	-				-0.6
3,788,688	+				-1.4
3,788,688	+				-0.3
3,788,688	+				+0.7
3,788,688	+				-1.0
3,788,696	-				-0.9
3,788,696	-				+0.1
3,788,725	-				+1.2
3,788,733	+				-1.6
3,788,733	+				-2.9
3,788,733	+				-1.4
3,788,738	+				-1.8
3,788,738	+				+1.2
3,788,738	+				-0.3
3,788,738	+				+0.8
3,788,738	+				-2.0
3,788,738	+				-1.1
3,788,738	+				-0.5
3,788,738	+				+0.1
3,788,738	+				-0.1
3,788,738	+				-1.7
3,788,738	+				+0.5
3,788,738	+				-0.0
3,788,738	+				+0.7
3,788,738	+				-1.3
3,788,738	+				-0.7
3,788,738	+				-0.4
3,788,738	+				-0.9
3,788,746	+				-0.4
3,788,746	-				-2.0
3,788,746	-				+0.2
3,788,746	-				+0.3
3,788,746	-				-1.8
3,788,746	-				-0.4
3,788,746	-				-1.6
3,788,746	-				+0.7
3,788,751	-				+0.4
3,788,753	+				+0.2
3,788,753	+				-0.7
3,788,758	+				-0.6
3,788,758	+				-1.0
3,788,758	+				+0.1
3,788,758	+				-1.2
3,788,758	+				+0.7
3,788,758	+				+0.0
3,788,758	+				+0.7
3,788,761	-				-0.5
3,788,764	-				-0.2
3,788,766	-				-1.6
3,788,766	-				-2.4
3,788,766	-				-0.1
3,788,803	+				-1.4
3,788,813	+				+0.7
3,788,813	+				-1.6
3,788,821	-				+0.7
3,788,831	+				-0.2
3,788,832	-				-0.0
3,788,836	+				-0.6
3,788,855	-				+0.3
3,788,868	-				-1.3
3,788,880	+				+0.8
3,788,885	+				+1.6
3,788,888	-				-1.0
3,788,890	+				-0.4
3,788,890	+				-1.2
3,788,890	+				-1.3
3,788,890	+				-1.0
3,788,890	+				-0.5
3,788,890	+				+0.1
3,788,890	+				+0.8
3,788,893	-				-0.4
3,788,895	+				-0.9
3,788,897	+		GFF3747	0.10	-0.4
3,788,898	-		GFF3747	0.10	+0.1
3,788,898	-		GFF3747	0.10	-0.2
3,788,898	-		GFF3747	0.10	-1.3
3,788,901	+		GFF3747	0.10	-0.7
3,788,909	-		GFF3747	0.11	+0.6
3,788,911	+		GFF3747	0.12	+0.0
3,788,911	+		GFF3747	0.12	+1.0
3,788,916	+		GFF3747	0.12	-0.6
3,788,916	+		GFF3747	0.12	-0.8
3,788,917	+		GFF3747	0.12	-0.3
3,788,936	+		GFF3747	0.14	-1.0
3,788,946	+		GFF3747	0.15	+0.3
3,788,957	-		GFF3747	0.17	-1.8
3,788,958	+		GFF3747	0.17	-0.7
3,788,962	-		GFF3747	0.17	-1.0
3,788,962	-		GFF3747	0.17	+0.6
3,788,966	-		GFF3747	0.18	+0.7
3,788,966	-		GFF3747	0.18	-1.6
3,788,976	+		GFF3747	0.19	-0.7
3,788,979	-		GFF3747	0.19	+0.1
3,788,981	-		GFF3747	0.19	+0.2
3,788,985	+		GFF3747	0.20	-0.8
3,788,985	+		GFF3747	0.20	+1.1
3,788,993	-		GFF3747	0.21	+1.2
3,788,993	-		GFF3747	0.21	+0.5
3,788,999	-		GFF3747	0.21	-1.0
3,789,004	+		GFF3747	0.22	-0.4
3,789,004	+		GFF3747	0.22	+0.0
3,789,012	-		GFF3747	0.23	+0.5
3,789,026	-		GFF3747	0.24	-0.9
3,789,048	+		GFF3747	0.27	-0.8
3,789,086	-		GFF3747	0.31	-0.5
3,789,128	+		GFF3747	0.36	+0.1
3,789,128	+		GFF3747	0.36	+1.1
3,789,136	-		GFF3747	0.36	+0.2
3,789,137	+		GFF3747	0.37	+0.6
3,789,145	-		GFF3747	0.37	+0.8
3,789,145	-		GFF3747	0.37	+0.6
3,789,155	-		GFF3747	0.39	-0.6
3,789,155	-		GFF3747	0.39	+0.3
3,789,173	+		GFF3747	0.41	+1.0
3,789,173	+		GFF3747	0.41	-0.4
3,789,181	-		GFF3747	0.41	-0.8
3,789,207	+		GFF3747	0.44	-0.0
3,789,230	-		GFF3747	0.47	+0.2
3,789,235	-		GFF3747	0.47	-0.5
3,789,237	+		GFF3747	0.48	-0.3
3,789,247	+		GFF3747	0.49	-2.1
3,789,257	+		GFF3747	0.50	+0.4
3,789,274	-		GFF3747	0.52	+0.1
3,789,276	+		GFF3747	0.52	-0.6
3,789,305	+		GFF3747	0.55	+0.6
3,789,316	+		GFF3747	0.56	-0.4
3,789,316	+		GFF3747	0.56	-0.6
3,789,316	+		GFF3747	0.56	+0.6
3,789,316	+		GFF3747	0.56	-0.6
3,789,316	+		GFF3747	0.56	-3.0
3,789,324	-		GFF3747	0.57	-0.7
3,789,324	-		GFF3747	0.57	-1.1
3,789,324	-		GFF3747	0.57	-0.8
3,789,330	-		GFF3747	0.58	-0.4
3,789,353	-		GFF3747	0.60	-0.8
3,789,365	-		GFF3747	0.62	-0.2
3,789,391	-		GFF3747	0.65	+0.3
3,789,432	+		GFF3747	0.69	-0.4
3,789,432	+		GFF3747	0.69	-0.0
3,789,440	-		GFF3747	0.70	-1.9
3,789,444	+		GFF3747	0.70	+1.7
3,789,449	+		GFF3747	0.71	-0.8
3,789,449	+		GFF3747	0.71	+0.0
3,789,454	+		GFF3747	0.72	+0.0
3,789,457	-		GFF3747	0.72	-0.3
3,789,472	-		GFF3747	0.74	-0.4
3,789,488	-		GFF3747	0.75	-1.6
3,789,491	+		GFF3747	0.76	+1.3
3,789,509	-		GFF3747	0.78	-1.0
3,789,511	+		GFF3747	0.78	-0.8
3,789,511	+		GFF3747	0.78	-0.4
3,789,518	-		GFF3747	0.79	-1.0
3,789,520	-		GFF3747	0.79	-0.3
3,789,541	-		GFF3747	0.81	-0.3
3,789,546	+		GFF3747	0.82	-1.2
3,789,552	+		GFF3747	0.82	-0.8
3,789,555	-		GFF3747	0.83	-0.6
3,789,561	+		GFF3747	0.83	+1.1
3,789,568	-		GFF3747	0.84	-0.4
3,789,636	+				+0.6
3,789,644	-				+0.2
3,789,673	-				+0.5
3,789,675	+				+1.1
3,789,675	+				+0.4
3,789,675	+				-0.6