Strain Fitness in Sphingobium sp. HT1-2 around GFF3738

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,779,776	+		GFF3735	0.65	+0.3
3,779,781	+		GFF3735	0.66	-1.4
3,779,781	+		GFF3735	0.66	+0.4
3,779,781	+		GFF3735	0.66	-1.4
3,779,789	-		GFF3735	0.66	-1.1
3,779,789	-		GFF3735	0.66	-0.1
3,779,789	-		GFF3735	0.66	+0.6
3,779,789	-		GFF3735	0.66	+0.6
3,779,797	-		GFF3735	0.67	-1.6
3,779,845	-		GFF3735	0.73	-0.4
3,779,860	+		GFF3735	0.74	-0.9
3,779,883	-		GFF3735	0.77	+0.6
3,779,884	+		GFF3735	0.77	-0.6
3,779,892	-		GFF3735	0.78	-0.3
3,779,892	-		GFF3735	0.78	-1.9
3,779,892	-		GFF3735	0.78	+1.1
3,779,892	-		GFF3735	0.78	-0.3
3,779,894	+		GFF3735	0.78	-0.9
3,779,894	+		GFF3735	0.78	+0.8
3,779,894	+		GFF3735	0.78	-0.1
3,779,894	+		GFF3735	0.78	-0.1
3,779,894	+		GFF3735	0.78	-1.7
3,779,894	+		GFF3735	0.78	+0.1
3,779,894	+		GFF3735	0.78	-1.9
3,779,894	+		GFF3735	0.78	-0.8
3,779,894	+		GFF3735	0.78	-1.7
3,779,894	+		GFF3735	0.78	+2.0
3,779,894	+		GFF3735	0.78	+0.2
3,779,894	+		GFF3735	0.78	+0.0
3,779,894	+		GFF3735	0.78	-1.0
3,779,894	+		GFF3735	0.78	+0.6
3,779,899	+		GFF3735	0.79	-0.3
3,779,902	-		GFF3735	0.79	-0.9
3,779,902	-		GFF3735	0.79	-1.1
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	+1.0
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	+0.8
3,779,902	-		GFF3735	0.79	+0.3
3,779,902	-		GFF3735	0.79	+0.1
3,779,902	-		GFF3735	0.79	+1.0
3,779,902	-		GFF3735	0.79	+0.5
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	-0.4
3,779,902	-		GFF3735	0.79	+0.3
3,779,902	-		GFF3735	0.79	+0.6
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	-0.9
3,779,902	-		GFF3735	0.79	+0.6
3,779,902	-		GFF3735	0.79	+0.2
3,779,902	-		GFF3735	0.79	-1.4
3,779,902	-		GFF3735	0.79	-0.6
3,779,902	-		GFF3735	0.79	+0.1
3,779,902	-		GFF3735	0.79	-1.2
3,779,902	-		GFF3735	0.79	-2.5
3,779,904	+		GFF3735	0.79	-0.4
3,779,904	+		GFF3735	0.79	+0.5
3,779,907	-		GFF3735	0.80	+0.3
3,779,907	-		GFF3735	0.80	+0.2
3,779,912	-		GFF3735	0.80	-0.4
3,779,920	+		GFF3735	0.81	-0.3
3,779,935	+		GFF3735	0.83	-0.2
3,779,935	+		GFF3735	0.83	+0.9
3,779,935	+		GFF3735	0.83	-1.4
3,779,935	+		GFF3735	0.83	+0.1
3,779,935	+		GFF3735	0.83	+0.3
3,779,935	+		GFF3735	0.83	-0.4
3,779,943	-		GFF3735	0.84	-2.3
3,779,943	-		GFF3735	0.84	+0.1
3,779,943	-		GFF3735	0.84	-0.5
3,779,943	-		GFF3735	0.84	+0.5
3,779,943	-		GFF3735	0.84	+0.4
3,779,950	+		GFF3735	0.85	+0.3
3,779,958	-		GFF3735	0.86	+1.1
3,779,958	-		GFF3735	0.86	-1.2
3,779,958	-		GFF3735	0.86	-0.1
3,779,959	+		GFF3735	0.86	-0.8
3,779,984	-		GFF3735	0.88	+0.5
3,779,994	-		GFF3735	0.90	-0.4
3,780,000	+				+0.9
3,780,003	-				-0.6
3,780,029	+				+0.2
3,780,029	+				+0.4
3,780,037	-				+0.1
3,780,037	-				-1.2
3,780,037	-				-0.6
3,780,039	-				-0.8
3,780,068	-				-1.6
3,780,070	+				-0.9
3,780,088	+				-0.8
3,780,121	+		GFF3736	0.12	+1.0
3,780,121	+		GFF3736	0.12	-0.4
3,780,121	+		GFF3736	0.12	-1.1
3,780,121	+		GFF3736	0.12	+0.1
3,780,121	+		GFF3736	0.12	+0.3
3,780,121	+		GFF3736	0.12	-0.9
3,780,127	-		GFF3736	0.13	+0.6
3,780,129	-		GFF3736	0.14	+0.9
3,780,129	-		GFF3736	0.14	-0.1
3,780,129	-		GFF3736	0.14	-0.4
3,780,129	-		GFF3736	0.14	-1.1
3,780,161	-		GFF3736	0.23	+0.5
3,780,176	+		GFF3736	0.28	-1.3
3,780,178	+		GFF3736	0.28	+2.4
3,780,186	-		GFF3736	0.31	+0.6
3,780,186	-		GFF3736	0.31	+0.1
3,780,196	+		GFF3736	0.34	+0.6
3,780,201	+		GFF3736	0.35	+0.3
3,780,209	-		GFF3736	0.37	+1.2
3,780,214	-		GFF3736	0.39	-0.3
3,780,219	-		GFF3736	0.40	-1.9
3,780,222	-		GFF3736	0.41	+0.6
3,780,232	+		GFF3736	0.44	+0.6
3,780,232	+		GFF3736	0.44	+0.1
3,780,240	-		GFF3736	0.47	-1.1
3,780,241	-		GFF3736	0.47	-1.3
3,780,244	+		GFF3736	0.48	-0.0
3,780,244	+		GFF3736	0.48	-0.5
3,780,265	-		GFF3736	0.54	+0.1
3,780,265	-		GFF3736	0.54	-1.1
3,780,293	+		GFF3736	0.62	-2.5
3,780,293	+		GFF3736	0.62	+0.7
3,780,296	-		GFF3736	0.63	+0.7
3,780,296	-		GFF3736	0.63	-0.3
3,780,300	+		GFF3736	0.64	-0.7
3,780,301	-		GFF3736	0.65	-1.8
3,780,308	-		GFF3736	0.67	-0.8
3,780,324	+		GFF3736	0.71	-0.7
3,780,324	+		GFF3736	0.71	+0.0
3,780,324	+		GFF3736	0.71	+0.4
3,780,324	+		GFF3736	0.71	-0.7
3,780,324	+		GFF3736	0.71	+1.2
3,780,324	+		GFF3736	0.71	+0.1
3,780,324	+		GFF3736	0.71	-1.1
3,780,330	+		GFF3736	0.73	-0.4
3,780,332	-		GFF3736	0.74	+0.1
3,780,332	-		GFF3736	0.74	-0.3
3,780,332	-		GFF3736	0.74	+0.7
3,780,332	-		GFF3736	0.74	+0.1
3,780,332	-		GFF3736	0.74	-0.1
3,780,348	-		GFF3736	0.78	+0.7
3,780,348	-		GFF3736	0.78	+0.7
3,780,390	-				-0.6
3,780,401	+				+0.4
3,780,409	-				+0.1
3,780,409	-				-1.7
3,780,416	+				+0.1
3,780,416	+				+0.0
3,780,424	-				-0.9
3,780,453	-				+0.1
3,780,477	+				-1.4
3,780,483	+				-0.9
3,780,484	+				-0.3
3,780,509	-				-0.6
3,780,553	+		GFF3737	0.19	-0.4
3,780,556	-		GFF3737	0.20	+0.7
3,780,565	-		GFF3737	0.23	-0.7
3,780,568	+		GFF3737	0.24	-0.8
3,780,606	-		GFF3737	0.39	+0.1
3,780,635	+		GFF3737	0.50	-0.9
3,780,635	+		GFF3737	0.50	-0.3
3,780,643	-		GFF3737	0.53	-0.4
3,780,643	-		GFF3737	0.53	-1.2
3,780,647	+		GFF3737	0.54	-0.2
3,780,661	-		GFF3737	0.59	+0.1
3,780,666	-		GFF3737	0.61	+0.1
3,780,673	+		GFF3737	0.64	+0.5
3,780,675	-		GFF3737	0.65	-0.6
3,780,691	-		GFF3737	0.71	-0.3
3,780,715	+		GFF3737	0.80	-0.3
3,780,715	+		GFF3737	0.80	+1.1
3,780,717	-		GFF3737	0.81	+0.7
3,780,717	-		GFF3737	0.81	-0.8
3,780,717	-		GFF3737	0.81	+0.7
3,780,717	-		GFF3737	0.81	-0.8
3,780,723	-		GFF3737	0.83	-1.5
3,780,723	-		GFF3737	0.83	+1.1
3,780,726	+		GFF3737	0.84	+1.0
3,780,749	+				+0.7
3,780,749	+				+1.5
3,780,749	+				+0.6
3,780,757	-				+0.5
3,780,785	+				-0.1
3,780,797	+				-0.3
3,780,797	+				-0.5
3,780,797	-				-0.4
3,780,807	+				-1.0
3,780,813	+				-0.7
3,780,813	+				-0.4
3,780,818	+				+1.0
3,780,818	+				+0.2
3,780,821	-				+0.2
3,780,821	-				+0.1
3,780,828	+				-1.4
3,780,828	+				-0.5
3,780,828	+				-0.6
3,780,828	+				-0.6
3,780,828	+				+0.3
3,780,828	+				-0.7
3,780,836	-		GFF3738	0.10	-0.7
3,780,848	+		GFF3738	0.12	-0.5
3,780,851	-		GFF3738	0.12	+0.4
3,780,856	-		GFF3738	0.13	-0.6
3,780,874	+		GFF3738	0.15	-1.1
3,780,874	+		GFF3738	0.15	+0.5
3,780,874	+		GFF3738	0.15	+1.1
3,780,874	+		GFF3738	0.15	-1.5
3,780,874	+		GFF3738	0.15	+0.1
3,780,874	+		GFF3738	0.15	+1.3
3,780,879	+		GFF3738	0.15	-1.0
3,780,879	+		GFF3738	0.15	+0.3
3,780,882	-		GFF3738	0.16	+0.2
3,780,882	-		GFF3738	0.16	+0.1
3,780,882	-		GFF3738	0.16	-1.1
3,780,882	-		GFF3738	0.16	+0.7
3,780,882	-		GFF3738	0.16	+0.1
3,780,882	-		GFF3738	0.16	-0.0
3,780,882	-		GFF3738	0.16	-1.6
3,780,882	-		GFF3738	0.16	+0.8
3,780,905	-		GFF3738	0.19	+0.5
3,780,905	-		GFF3738	0.19	-0.0
3,780,931	+		GFF3738	0.22	+0.0
3,780,938	+		GFF3738	0.23	+0.2
3,780,938	+		GFF3738	0.23	+0.8
3,780,946	+		GFF3738	0.24	-0.2
3,780,946	-		GFF3738	0.24	-0.9
3,780,947	+		GFF3738	0.24	-0.7
3,780,956	-		GFF3738	0.25	+0.6
3,780,957	+		GFF3738	0.25	-0.6
3,780,964	+		GFF3738	0.26	+1.2
3,780,981	-		GFF3738	0.28	-1.4
3,781,003	-		GFF3738	0.31	-0.9
3,781,037	+		GFF3738	0.35	+0.1
3,781,039	-		GFF3738	0.36	+0.1
3,781,043	+		GFF3738	0.36	-0.8
3,781,058	+		GFF3738	0.38	-0.6
3,781,072	-		GFF3738	0.40	+0.6
3,781,072	-		GFF3738	0.40	+0.1
3,781,074	+		GFF3738	0.40	-1.1
3,781,079	+		GFF3738	0.41	-0.1
3,781,079	+		GFF3738	0.41	-2.2
3,781,079	+		GFF3738	0.41	-0.3
3,781,079	+		GFF3738	0.41	+0.6
3,781,079	+		GFF3738	0.41	+1.4
3,781,082	-		GFF3738	0.41	-0.8
3,781,082	-		GFF3738	0.41	-0.3
3,781,084	+		GFF3738	0.41	-0.0
3,781,087	-		GFF3738	0.42	+0.7
3,781,087	-		GFF3738	0.42	-0.6
3,781,087	-		GFF3738	0.42	-0.1
3,781,087	-		GFF3738	0.42	-1.4
3,781,087	-		GFF3738	0.42	-1.3
3,781,087	-		GFF3738	0.42	-0.5
3,781,087	-		GFF3738	0.42	+0.8
3,781,087	-		GFF3738	0.42	+0.0
3,781,087	-		GFF3738	0.42	-1.7
3,781,087	-		GFF3738	0.42	-1.3
3,781,089	+		GFF3738	0.42	+1.0
3,781,089	+		GFF3738	0.42	-0.5
3,781,089	+		GFF3738	0.42	+0.9
3,781,092	-		GFF3738	0.42	-1.4
3,781,097	-		GFF3738	0.43	-0.6
3,781,097	-		GFF3738	0.43	-1.0
3,781,103	+		GFF3738	0.44	+0.1
3,781,121	-		GFF3738	0.46	-0.4
3,781,123	+		GFF3738	0.46	-0.2
3,781,128	+		GFF3738	0.47	-0.9
3,781,128	+		GFF3738	0.47	-1.0
3,781,135	+		GFF3738	0.48	-0.9
3,781,136	-		GFF3738	0.48	+0.1
3,781,136	-		GFF3738	0.48	+0.7
3,781,141	+		GFF3738	0.49	+0.1
3,781,143	-		GFF3738	0.49	+0.4
3,781,148	-		GFF3738	0.50	-0.2
3,781,157	-		GFF3738	0.51	-0.2
3,781,162	+		GFF3738	0.51	-0.9
3,781,169	-		GFF3738	0.52	-0.4
3,781,169	-		GFF3738	0.52	-1.3
3,781,170	-		GFF3738	0.52	-1.6
3,781,170	-		GFF3738	0.52	+0.6
3,781,175	-		GFF3738	0.53	-0.7
3,781,204	+		GFF3738	0.57	-1.9
3,781,204	+		GFF3738	0.57	-0.1
3,781,204	+		GFF3738	0.57	-0.4
3,781,212	-		GFF3738	0.58	-0.7
3,781,212	-		GFF3738	0.58	-0.7
3,781,244	+		GFF3738	0.62	-0.3
3,781,244	+		GFF3738	0.62	-0.1
3,781,244	+		GFF3738	0.62	+0.5
3,781,244	+		GFF3738	0.62	+1.4
3,781,244	+		GFF3738	0.62	+1.0
3,781,244	+		GFF3738	0.62	-1.4
3,781,244	+		GFF3738	0.62	+1.1
3,781,252	-		GFF3738	0.63	+0.2
3,781,252	-		GFF3738	0.63	+0.8
3,781,252	-		GFF3738	0.63	+0.1
3,781,279	+		GFF3738	0.66	-0.1
3,781,289	+		GFF3738	0.67	-2.3
3,781,291	+		GFF3738	0.68	-0.3
3,781,291	+		GFF3738	0.68	+0.1
3,781,291	+		GFF3738	0.68	-0.6
3,781,299	-		GFF3738	0.69	+0.6
3,781,299	-		GFF3738	0.69	+0.6
3,781,299	-		GFF3738	0.69	+0.5
3,781,299	-		GFF3738	0.69	-1.3
3,781,299	-		GFF3738	0.69	-0.4
3,781,306	-		GFF3738	0.70	-0.3
3,781,341	+		GFF3738	0.74	+1.0
3,781,341	+		GFF3738	0.74	-1.6
3,781,341	+		GFF3738	0.74	-0.9
3,781,347	-		GFF3738	0.75	-1.2
3,781,349	-		GFF3738	0.75	-0.6
3,781,349	-		GFF3738	0.75	-0.4
3,781,374	+		GFF3738	0.78	+0.7
3,781,374	+		GFF3738	0.78	+0.4
3,781,382	-		GFF3738	0.79	+0.9
3,781,423	-		GFF3738	0.84	-1.4
3,781,424	+		GFF3738	0.85	-0.1
3,781,440	+		GFF3738	0.87	-1.0
3,781,457	+		GFF3738	0.89	-0.7
3,781,466	+		GFF3738	0.90	-1.1
3,781,466	+		GFF3738	0.90	-1.2
3,781,474	-				-1.7
3,781,475	-				+0.3
3,781,476	+				-1.2
3,781,476	+				+0.6
3,781,476	+				-0.4
3,781,491	+				-1.2
3,781,492	+				-1.3
3,781,509	+				+0.0
3,781,519	-				+0.7
3,781,538	+				-1.2
3,781,543	+				-0.7
3,781,561	-				-0.3
3,781,581	+				-0.2
3,781,581	+				-0.9
3,781,581	+				-0.1
3,781,589	-		GFF3739	0.12	+1.0
3,781,589	-		GFF3739	0.12	-0.2
3,781,589	-		GFF3739	0.12	+0.5
3,781,598	-		GFF3739	0.15	-0.4
3,781,600	+		GFF3739	0.16	-0.3
3,781,608	-		GFF3739	0.19	-2.7
3,781,608	-		GFF3739	0.19	-0.8
3,781,645	+		GFF3739	0.33	-1.0
3,781,645	+		GFF3739	0.33	-0.6
3,781,645	+		GFF3739	0.33	-1.8
3,781,645	+		GFF3739	0.33	-0.6
3,781,645	+		GFF3739	0.33	-1.9
3,781,653	-		GFF3739	0.36	-2.2
3,781,653	-		GFF3739	0.36	+0.2
3,781,653	-		GFF3739	0.36	+0.5
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3,781,809	+				-0.2
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3,781,866	+				+0.5
3,781,892	-				+0.0
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3,782,459	+		GFF3740	0.81	-1.1
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3,782,467	-		GFF3740	0.82	-1.8
3,782,467	-		GFF3740	0.82	+0.0
3,782,503	+		GFF3740	0.87	+0.5