Strain Fitness in Sphingobium sp. HT1-2 around GFF3729

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,771,917	-		GFF3728	0.44	+0.3
3,771,926	+		GFF3728	0.45	-1.2
3,771,929	-		GFF3728	0.45	-0.7
3,771,942	+		GFF3728	0.45	-0.6
3,771,966	+		GFF3728	0.47	+0.1
3,771,968	+		GFF3728	0.47	-1.0
3,771,968	+		GFF3728	0.47	+0.4
3,771,973	+		GFF3728	0.47	-0.6
3,771,973	+		GFF3728	0.47	-0.1
3,771,973	+		GFF3728	0.47	-0.9
3,771,974	-		GFF3728	0.47	+0.4
3,771,976	-		GFF3728	0.47	+0.5
3,771,981	-		GFF3728	0.48	+0.2
3,771,981	-		GFF3728	0.48	-0.5
3,771,981	-		GFF3728	0.48	-1.5
3,771,981	-		GFF3728	0.48	-0.6
3,771,981	-		GFF3728	0.48	-0.1
3,772,008	+		GFF3728	0.49	-0.3
3,772,017	+		GFF3728	0.50	+1.7
3,772,020	-		GFF3728	0.50	-0.5
3,772,043	-		GFF3728	0.51	-0.5
3,772,060	+		GFF3728	0.52	+1.8
3,772,067	-		GFF3728	0.53	-2.3
3,772,081	+		GFF3728	0.53	-0.7
3,772,081	+		GFF3728	0.53	-0.3
3,772,084	-		GFF3728	0.54	+0.7
3,772,086	+		GFF3728	0.54	+0.4
3,772,086	+		GFF3728	0.54	+1.1
3,772,086	+		GFF3728	0.54	-0.3
3,772,089	-		GFF3728	0.54	-1.0
3,772,089	-		GFF3728	0.54	+0.2
3,772,094	-		GFF3728	0.54	-1.1
3,772,099	-		GFF3728	0.54	-1.6
3,772,099	-		GFF3728	0.54	-0.9
3,772,099	-		GFF3728	0.54	+0.4
3,772,110	-		GFF3728	0.55	-0.4
3,772,126	-		GFF3728	0.56	-0.4
3,772,157	+		GFF3728	0.58	-1.0
3,772,165	-		GFF3728	0.58	-0.2
3,772,172	+		GFF3728	0.59	+1.0
3,772,175	-		GFF3728	0.59	-1.5
3,772,177	+		GFF3728	0.59	+0.4
3,772,177	+		GFF3728	0.59	-0.6
3,772,183	+		GFF3728	0.59	-0.2
3,772,185	-		GFF3728	0.59	+0.2
3,772,188	+		GFF3728	0.60	+1.9
3,772,188	+		GFF3728	0.60	-2.3
3,772,188	+		GFF3728	0.60	-0.2
3,772,188	+		GFF3728	0.60	-0.4
3,772,188	+		GFF3728	0.60	-1.1
3,772,188	+		GFF3728	0.60	+1.0
3,772,188	+		GFF3728	0.60	+0.2
3,772,188	+		GFF3728	0.60	-0.6
3,772,188	+		GFF3728	0.60	+1.5
3,772,191	-		GFF3728	0.60	-0.3
3,772,196	-		GFF3728	0.60	-1.3
3,772,196	-		GFF3728	0.60	-1.0
3,772,196	-		GFF3728	0.60	-0.5
3,772,196	-		GFF3728	0.60	-2.9
3,772,201	-		GFF3728	0.60	+0.1
3,772,201	-		GFF3728	0.60	-0.0
3,772,213	+		GFF3728	0.61	-0.9
3,772,213	+		GFF3728	0.61	+0.2
3,772,213	+		GFF3728	0.61	+1.3
3,772,223	+		GFF3728	0.62	-1.6
3,772,223	+		GFF3728	0.62	+0.3
3,772,223	+		GFF3728	0.62	-0.5
3,772,223	+		GFF3728	0.62	-0.6
3,772,223	+		GFF3728	0.62	+0.4
3,772,223	+		GFF3728	0.62	-1.4
3,772,231	-		GFF3728	0.62	-0.7
3,772,231	-		GFF3728	0.62	+0.1
3,772,255	+		GFF3728	0.63	+1.5
3,772,255	+		GFF3728	0.63	-1.3
3,772,263	-		GFF3728	0.64	-2.1
3,772,277	-		GFF3728	0.65	+0.1
3,772,279	-		GFF3728	0.65	-1.2
3,772,279	-		GFF3728	0.65	+0.1
3,772,279	-		GFF3728	0.65	+1.0
3,772,279	-		GFF3728	0.65	+0.3
3,772,287	+		GFF3728	0.65	-0.7
3,772,287	+		GFF3728	0.65	+0.5
3,772,288	+		GFF3728	0.65	-1.1
3,772,295	+		GFF3728	0.66	-0.4
3,772,295	+		GFF3728	0.66	+0.5
3,772,295	-		GFF3728	0.66	-0.5
3,772,303	-		GFF3728	0.66	+1.7
3,772,308	-		GFF3728	0.66	-0.9
3,772,310	+		GFF3728	0.66	+0.4
3,772,312	+		GFF3728	0.67	-1.8
3,772,312	+		GFF3728	0.67	-0.2
3,772,312	+		GFF3728	0.67	+0.8
3,772,312	+		GFF3728	0.67	+1.9
3,772,318	-		GFF3728	0.67	-0.4
3,772,318	-		GFF3728	0.67	-0.3
3,772,320	+		GFF3728	0.67	-1.9
3,772,320	-		GFF3728	0.67	-1.8
3,772,320	-		GFF3728	0.67	-1.2
3,772,338	+		GFF3728	0.68	-0.5
3,772,338	+		GFF3728	0.68	-1.1
3,772,338	+		GFF3728	0.68	+0.8
3,772,338	+		GFF3728	0.68	-1.3
3,772,350	-		GFF3728	0.69	-0.4
3,772,351	-		GFF3728	0.69	-0.8
3,772,356	-		GFF3728	0.69	+0.3
3,772,358	-		GFF3728	0.69	-0.0
3,772,416	-		GFF3728	0.73	-0.7
3,772,439	+		GFF3728	0.74	+1.2
3,772,439	+		GFF3728	0.74	-0.2
3,772,439	+		GFF3728	0.74	-0.5
3,772,445	-		GFF3728	0.74	-0.9
3,772,445	-		GFF3728	0.74	-0.5
3,772,447	-		GFF3728	0.74	-0.9
3,772,447	-		GFF3728	0.74	-1.4
3,772,456	+		GFF3728	0.75	+0.4
3,772,456	+		GFF3728	0.75	+0.1
3,772,461	+		GFF3728	0.75	-1.0
3,772,461	+		GFF3728	0.75	+0.1
3,772,461	+		GFF3728	0.75	-0.3
3,772,469	-		GFF3728	0.76	-0.4
3,772,469	-		GFF3728	0.76	-0.3
3,772,469	-		GFF3728	0.76	-0.6
3,772,469	-		GFF3728	0.76	-0.0
3,772,469	-		GFF3728	0.76	-1.8
3,772,474	-		GFF3728	0.76	+0.5
3,772,479	+		GFF3728	0.76	-0.3
3,772,502	-		GFF3728	0.77	+0.2
3,772,510	+		GFF3728	0.78	+0.3
3,772,511	+		GFF3728	0.78	+0.4
3,772,519	-		GFF3728	0.78	-0.2
3,772,520	+		GFF3728	0.79	+0.3
3,772,520	+		GFF3728	0.79	-0.6
3,772,520	+		GFF3728	0.79	-1.3
3,772,520	+		GFF3728	0.79	+0.2
3,772,520	+		GFF3728	0.79	-0.8
3,772,520	+		GFF3728	0.79	-0.3
3,772,520	+		GFF3728	0.79	-0.6
3,772,528	-		GFF3728	0.79	-0.5
3,772,528	-		GFF3728	0.79	-0.1
3,772,528	-		GFF3728	0.79	+0.7
3,772,528	-		GFF3728	0.79	+0.9
3,772,528	-		GFF3728	0.79	-0.8
3,772,528	-		GFF3728	0.79	+0.7
3,772,528	-		GFF3728	0.79	-2.1
3,772,528	-		GFF3728	0.79	-0.6
3,772,528	-		GFF3728	0.79	+0.1
3,772,528	-		GFF3728	0.79	-0.9
3,772,528	-		GFF3728	0.79	-0.3
3,772,528	-		GFF3728	0.79	-1.6
3,772,528	-		GFF3728	0.79	-1.0
3,772,528	-		GFF3728	0.79	+1.7
3,772,528	-		GFF3728	0.79	-1.0
3,772,528	-		GFF3728	0.79	-0.8
3,772,528	-		GFF3728	0.79	-0.6
3,772,528	-		GFF3728	0.79	-0.3
3,772,528	-		GFF3728	0.79	-0.7
3,772,528	-		GFF3728	0.79	-0.9
3,772,534	+		GFF3728	0.79	+0.5
3,772,535	+		GFF3728	0.79	+0.4
3,772,535	+		GFF3728	0.79	+0.1
3,772,535	-		GFF3728	0.79	-0.6
3,772,542	-		GFF3728	0.80	+0.3
3,772,545	+		GFF3728	0.80	-0.0
3,772,549	+		GFF3728	0.80	+0.1
3,772,553	-		GFF3728	0.80	-2.1
3,772,557	-		GFF3728	0.81	-2.0
3,772,572	+		GFF3728	0.81	-0.6
3,772,578	+		GFF3728	0.82	-1.0
3,772,580	-		GFF3728	0.82	-1.0
3,772,580	-		GFF3728	0.82	-0.3
3,772,580	-		GFF3728	0.82	-0.3
3,772,580	-		GFF3728	0.82	+0.9
3,772,586	-		GFF3728	0.82	-1.0
3,772,595	+		GFF3728	0.83	+0.5
3,772,625	+		GFF3728	0.85	-0.3
3,772,670	-		GFF3728	0.87	-0.1
3,772,677	+		GFF3728	0.87	-1.2
3,772,685	+		GFF3728	0.88	-0.9
3,772,686	+		GFF3728	0.88	-0.0
3,772,694	-		GFF3728	0.88	+1.6
3,772,736	+				+0.1
3,772,748	-				-1.1
3,772,773	-				+0.3
3,772,777	-				+0.5
3,772,780	+				+0.1
3,772,780	+				-1.3
3,772,780	+				-0.5
3,772,780	+				+0.2
3,772,786	+				-0.1
3,772,786	+				-0.5
3,772,786	+				+0.3
3,772,787	-				+1.0
3,772,787	-				+0.1
3,772,788	-				-0.9
3,772,788	-				+0.0
3,772,788	-				-1.0
3,772,788	-				-0.5
3,772,788	-				-1.0
3,772,791	+				-1.1
3,772,794	-				-0.9
3,772,794	-				-1.5
3,772,803	+				-0.1
3,772,806	-				+0.9
3,772,846	+				-0.1
3,772,846	+				+0.5
3,772,846	+				+0.2
3,772,848	-				+0.4
3,772,853	-				+1.3
3,772,854	-				+0.1
3,772,854	-				+0.5
3,772,898	-				+0.3
3,772,918	-				-0.8
3,772,921	+				+0.0
3,772,921	+				+0.5
3,772,928	-				-1.1
3,772,929	-				+1.9
3,772,929	-				-0.0
3,772,929	-				+1.2
3,772,934	-				+0.2
3,772,940	+				+0.3
3,772,950	+				-0.2
3,772,968	+				+0.5
3,772,968	+				-1.6
3,772,968	+				-0.1
3,772,968	+				-0.3
3,772,973	+				-0.6
3,772,976	-				-0.0
3,772,976	-				-1.1
3,772,976	-				+0.4
3,772,976	-				+0.1
3,772,976	-				-0.8
3,772,976	-				+0.9
3,772,978	+				-0.6
3,772,978	+				-2.0
3,772,986	-				-0.1
3,772,986	-				+0.3
3,773,009	-		GFF3729	0.12	-0.6
3,773,011	-		GFF3729	0.12	-0.1
3,773,022	+		GFF3729	0.13	+1.0
3,773,029	+		GFF3729	0.14	-1.6
3,773,030	-		GFF3729	0.14	+0.0
3,773,070	-		GFF3729	0.18	+1.0
3,773,097	+		GFF3729	0.21	-0.9
3,773,104	-		GFF3729	0.21	-0.4
3,773,105	-		GFF3729	0.21	-2.4
3,773,106	+		GFF3729	0.21	-2.4
3,773,114	-		GFF3729	0.22	-2.2
3,773,128	-		GFF3729	0.24	+1.1
3,773,160	+		GFF3729	0.27	-0.3
3,773,162	-		GFF3729	0.27	+0.7
3,773,183	+		GFF3729	0.29	-0.3
3,773,183	+		GFF3729	0.29	+0.9
3,773,186	-		GFF3729	0.29	+0.1
3,773,196	-		GFF3729	0.30	-1.3
3,773,198	+		GFF3729	0.30	+1.1
3,773,207	-		GFF3729	0.31	-0.9
3,773,216	+		GFF3729	0.32	-1.2
3,773,216	+		GFF3729	0.32	-1.3
3,773,219	+		GFF3729	0.33	-0.9
3,773,219	-		GFF3729	0.33	-0.5
3,773,224	-		GFF3729	0.33	-1.3
3,773,227	-		GFF3729	0.33	-0.8
3,773,264	-		GFF3729	0.37	-0.6
3,773,269	-		GFF3729	0.37	-0.3
3,773,276	+		GFF3729	0.38	-1.2
3,773,284	-		GFF3729	0.39	+0.5
3,773,374	-		GFF3729	0.48	+1.1
3,773,407	+		GFF3729	0.51	-0.3
3,773,407	+		GFF3729	0.51	-0.0
3,773,427	-		GFF3729	0.53	-0.0
3,773,427	-		GFF3729	0.53	-0.4
3,773,429	+		GFF3729	0.53	-1.6
3,773,432	-		GFF3729	0.53	-2.0
3,773,437	-		GFF3729	0.54	+0.5
3,773,437	-		GFF3729	0.54	-0.9
3,773,437	-		GFF3729	0.54	+0.9
3,773,437	-		GFF3729	0.54	-1.0
3,773,443	+		GFF3729	0.55	-0.8
3,773,453	+		GFF3729	0.56	-1.2
3,773,461	-		GFF3729	0.56	-1.2
3,773,476	+		GFF3729	0.58	-1.0
3,773,484	+		GFF3729	0.59	+0.0
3,773,497	+		GFF3729	0.60	-0.6
3,773,497	+		GFF3729	0.60	+0.1
3,773,505	-		GFF3729	0.61	-1.1
3,773,512	+		GFF3729	0.61	-1.2
3,773,520	-		GFF3729	0.62	-0.5
3,773,550	+		GFF3729	0.65	-0.5
3,773,556	-		GFF3729	0.66	+0.4
3,773,558	-		GFF3729	0.66	-3.2
3,773,558	-		GFF3729	0.66	-0.3
3,773,584	+		GFF3729	0.68	-0.3
3,773,622	+		GFF3729	0.72	-1.6
3,773,666	-		GFF3729	0.76	-1.9
3,773,668	+		GFF3729	0.77	-0.5
3,773,668	+		GFF3729	0.77	+0.3
3,773,675	+		GFF3729	0.77	+1.2
3,773,676	-		GFF3729	0.77	+0.7
3,773,679	+		GFF3729	0.78	-0.6
3,773,679	+		GFF3729	0.78	+0.9
3,773,680	+		GFF3729	0.78	-1.0
3,773,683	-		GFF3729	0.78	+0.2
3,773,687	-		GFF3729	0.79	-0.1
3,773,688	-		GFF3729	0.79	-0.8
3,773,692	+		GFF3729	0.79	-0.7
3,773,694	+		GFF3729	0.79	+0.2
3,773,694	+		GFF3729	0.79	-0.1
3,773,702	-		GFF3729	0.80	-2.3
3,773,702	-		GFF3729	0.80	+0.3
3,773,702	-		GFF3729	0.80	+0.3
3,773,728	+		GFF3729	0.83	+0.4
3,773,743	-		GFF3729	0.84	-1.3
3,773,743	-		GFF3729	0.84	-0.1
3,773,753	-		GFF3729	0.85	-0.3
3,773,758	-		GFF3729	0.86	-2.1
3,773,768	-		GFF3729	0.87	+1.0
3,773,811	-				-1.6
3,773,830	+				-1.3
3,773,832	-				+0.3
3,773,854	+				+1.4
3,773,875	-				+0.1
3,773,875	-				+0.7
3,773,885	+				-2.2
3,773,885	-				+0.5
3,773,887	+				+0.3
3,773,887	+				+0.5
3,773,887	+				-1.6
3,773,895	-				-0.4
3,773,905	+				+0.4
3,773,905	+				-0.2
3,773,913	-				+0.1
3,773,955	+				-0.7
3,773,955	+				-1.0
3,773,955	+				-1.4
3,773,958	-				-0.2
3,773,963	-				-1.5
3,773,963	-				-0.1
3,773,963	-				-0.9
3,773,994	+				-0.1
3,773,994	+				+0.7
3,773,999	+				+0.5
3,774,002	-				+0.5
3,774,002	-				+0.0
3,774,004	+				+1.1
3,774,004	+				-0.9
3,774,004	+				-0.7
3,774,012	-		GFF3730	0.11	-0.7
3,774,012	-		GFF3730	0.11	-1.5
3,774,012	-		GFF3730	0.11	-1.6
3,774,040	+		GFF3730	0.16	-1.3
3,774,102	+		GFF3730	0.26	-0.0
3,774,102	+		GFF3730	0.26	-0.3
3,774,102	+		GFF3730	0.26	-0.5
3,774,102	+		GFF3730	0.26	-0.8
3,774,102	+		GFF3730	0.26	-0.8
3,774,102	+		GFF3730	0.26	-0.5
3,774,102	+		GFF3730	0.26	+0.8
3,774,102	+		GFF3730	0.26	+1.4
3,774,102	+		GFF3730	0.26	-0.4
3,774,107	+		GFF3730	0.27	-0.7
3,774,108	-		GFF3730	0.27	-0.3
3,774,110	-		GFF3730	0.27	-0.5
3,774,110	-		GFF3730	0.27	+0.9
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