Strain Fitness in Sphingobium sp. HT1-2 around GFF368

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
359,324	+		GFF367	0.14	-0.8
359,356	+		GFF367	0.18	-0.4
359,388	+		GFF367	0.22	+0.5
359,425	+		GFF367	0.27	-1.7
359,425	+		GFF367	0.27	-0.7
359,428	+		GFF367	0.27	+0.4
359,431	-		GFF367	0.28	+0.3
359,431	-		GFF367	0.28	-0.1
359,458	+		GFF367	0.31	-0.4
359,458	+		GFF367	0.31	-1.0
359,458	+		GFF367	0.31	-0.6
359,466	-		GFF367	0.32	-0.5
359,466	-		GFF367	0.32	+0.5
359,468	+		GFF367	0.33	-0.6
359,468	+		GFF367	0.33	-0.2
359,473	+		GFF367	0.33	+1.0
359,481	+		GFF367	0.34	-0.5
359,481	+		GFF367	0.34	-0.7
359,489	-		GFF367	0.35	-1.4
359,489	-		GFF367	0.35	-0.9
359,489	-		GFF367	0.35	-0.6
359,489	-		GFF367	0.35	-1.1
359,503	+		GFF367	0.37	-0.0
359,503	+		GFF367	0.37	+0.4
359,503	+		GFF367	0.37	+0.7
359,503	+		GFF367	0.37	-2.9
359,511	-		GFF367	0.38	+0.2
359,511	-		GFF367	0.38	-1.4
359,511	-		GFF367	0.38	-0.8
359,535	+		GFF367	0.42	-0.6
359,535	+		GFF367	0.42	+1.0
359,535	+		GFF367	0.42	+1.4
359,535	+		GFF367	0.42	-0.9
359,543	-		GFF367	0.43	-0.5
359,543	-		GFF367	0.43	-0.6
359,543	-		GFF367	0.43	-0.4
359,549	-		GFF367	0.43	+0.2
359,551	+		GFF367	0.44	+0.4
359,551	+		GFF367	0.44	+0.4
359,551	+		GFF367	0.44	+0.8
359,553	-		GFF367	0.44	-1.0
359,559	-		GFF367	0.45	-0.3
359,559	-		GFF367	0.45	-1.6
359,559	-		GFF367	0.45	+0.4
359,570	+		GFF367	0.46	+0.3
359,577	+		GFF367	0.47	-0.6
359,578	+		GFF367	0.47	-2.3
359,585	-		GFF367	0.48	-0.5
359,586	-		GFF367	0.48	-0.9
359,598	+		GFF367	0.50	-0.9
359,604	+		GFF367	0.51	-1.3
359,606	-		GFF367	0.51	-0.1
359,606	-		GFF367	0.51	+0.2
359,611	-		GFF367	0.52	+1.4
359,611	-		GFF367	0.52	-1.0
359,613	+		GFF367	0.52	+0.2
359,616	-		GFF367	0.52	-1.7
359,630	+		GFF367	0.54	-1.7
359,635	+		GFF367	0.55	-1.4
359,635	+		GFF367	0.55	-1.4
359,635	+		GFF367	0.55	-0.0
359,635	+		GFF367	0.55	-0.9
359,635	+		GFF367	0.55	-0.3
359,635	+		GFF367	0.55	-0.6
359,643	-		GFF367	0.56	+1.2
359,643	-		GFF367	0.56	-1.0
359,643	-		GFF367	0.56	+0.1
359,643	-		GFF367	0.56	-0.9
359,643	-		GFF367	0.56	-0.8
359,643	-		GFF367	0.56	+0.5
359,643	-		GFF367	0.56	-0.6
359,644	+		GFF367	0.56	+1.3
359,673	-		GFF367	0.60	+1.3
359,680	-		GFF367	0.61	+0.1
359,697	-		GFF367	0.63	-1.3
359,723	+		GFF367	0.67	+0.7
359,758	+		GFF367	0.71	-1.9
359,758	+		GFF367	0.71	+0.7
359,760	-		GFF367	0.71	+0.7
359,791	-		GFF367	0.76	+0.3
359,817	+		GFF367	0.79	-0.6
359,825	-		GFF367	0.80	-0.2
359,829	+		GFF367	0.81	+1.1
359,839	+		GFF367	0.82	-1.3
359,839	+		GFF367	0.82	+0.4
359,839	+		GFF367	0.82	+0.3
359,839	+		GFF367	0.82	+0.4
359,839	+		GFF367	0.82	+1.1
359,839	+		GFF367	0.82	-0.5
359,839	+		GFF367	0.82	-0.3
359,839	+		GFF367	0.82	-0.8
359,839	+		GFF367	0.82	+1.5
359,840	-		GFF367	0.82	-0.0
359,840	-		GFF367	0.82	-1.1
359,846	+		GFF367	0.83	-0.3
359,847	-		GFF367	0.83	-0.4
359,847	-		GFF367	0.83	-1.5
359,847	-		GFF367	0.83	-1.1
359,883	+		GFF367	0.88	-0.3
359,891	-		GFF367	0.89	-1.0
359,891	-		GFF367	0.89	-1.6
359,891	-		GFF367	0.89	-1.0
359,891	-		GFF367	0.89	-0.5
359,891	-		GFF367	0.89	+0.0
359,936	+				+0.2
359,937	+				-0.5
359,937	+				-1.8
359,937	+				+1.4
359,937	+				+0.7
359,937	+				-0.0
359,945	-				+0.0
359,945	-				-0.7
359,977	+				-0.7
359,977	+				+0.4
359,977	+				-0.0
359,977	+				-1.0
359,984	+				-0.6
359,984	+				-0.3
359,984	+				+0.0
359,984	+				-0.6
359,984	+				+1.7
359,985	-				-0.1
359,989	+				-0.7
359,989	+				-0.0
359,992	-				-0.9
359,992	-				+1.1
359,992	-				-0.5
359,992	-				-1.2
359,992	-				-0.5
360,003	-				+0.3
360,043	+				-0.6
360,046	-				+0.2
360,052	+				-1.3
360,052	+				-0.8
360,070	-				+1.1
360,077	+				-0.6
360,080	-				-0.6
360,085	-				-1.8
360,096	-				-1.3
360,096	-				+0.3
360,099	-				-0.2
360,109	+				+0.4
360,109	+				-0.4
360,109	+				+1.0
360,112	-				+0.3
360,112	-				-0.1
360,117	-				-0.7
360,140	+				-0.2
360,142	+				-0.5
360,143	-				+0.4
360,150	-				-1.1
360,150	-				+0.3
360,150	-				+0.6
360,167	+				-0.8
360,167	+				+0.6
360,169	+				-0.3
360,175	-				-0.3
360,175	-				+0.4
360,175	-				-0.4
360,203	-				-1.5
360,207	+				-1.8
360,207	+				+1.8
360,229	+				+2.5
360,229	+				-0.9
360,229	+				+0.8
360,229	+				-1.3
360,229	+				-1.1
360,230	+				-1.0
360,237	-				-0.8
360,237	-				-0.8
360,237	-				-1.2
360,237	-				-0.7
360,237	-				+0.2
360,246	+				-1.8
360,254	-				-1.1
360,254	-				-0.3
360,265	+				+0.3
360,265	+				+0.7
360,272	-				-0.6
360,273	-				+0.3
360,273	-				-0.7
360,276	+				+1.1
360,280	+				+0.5
360,288	-				+0.4
360,314	-				-0.2
360,319	-				-0.9
360,324	-				+0.3
360,329	+				-1.9
360,332	-				-0.4
360,337	-				-0.4
360,337	-				+2.0
360,337	-				+0.1
360,340	+				+0.5
360,342	-				-1.5
360,349	+				+0.5
360,380	+				+0.3
360,380	+				-0.5
360,380	+				+0.4
360,380	+				-1.1
360,382	-				-1.0
360,382	-				+0.5
360,386	+				-0.8
360,387	+				-1.8
360,388	-				-0.7
360,388	-				-0.6
360,395	+				+0.1
360,395	+				-0.5
360,399	+				-0.1
360,403	-				-2.0
360,403	-				-0.8
360,405	+				-1.2
360,410	-				-1.0
360,412	+		GFF368	0.10	-1.2
360,412	+		GFF368	0.10	-0.5
360,412	-		GFF368	0.10	-0.5
360,412	-		GFF368	0.10	-0.9
360,412	-		GFF368	0.10	-1.2
360,413	-		GFF368	0.10	+0.1
360,420	-		GFF368	0.11	-0.6
360,446	+		GFF368	0.13	-0.3
360,446	+		GFF368	0.13	-1.0
360,454	-		GFF368	0.14	+0.5
360,459	+		GFF368	0.15	-0.9
360,462	-		GFF368	0.15	-0.5
360,464	+		GFF368	0.15	-0.7
360,465	-		GFF368	0.15	-0.6
360,467	-		GFF368	0.15	-1.2
360,467	-		GFF368	0.15	-0.6
360,472	-		GFF368	0.16	+0.4
360,472	-		GFF368	0.16	+1.1
360,484	-		GFF368	0.17	+0.1
360,516	-		GFF368	0.20	-0.7
360,540	-		GFF368	0.22	-0.8
360,546	-		GFF368	0.23	-0.9
360,546	-		GFF368	0.23	-0.5
360,546	-		GFF368	0.23	-0.5
360,559	+		GFF368	0.24	+0.3
360,559	+		GFF368	0.24	-0.9
360,564	-		GFF368	0.25	-1.9
360,580	+		GFF368	0.26	-0.1
360,588	-		GFF368	0.27	+1.1
360,588	-		GFF368	0.27	-0.6
360,588	-		GFF368	0.27	+0.5
360,600	-		GFF368	0.28	-0.3
360,603	+		GFF368	0.28	-1.1
360,604	-		GFF368	0.28	+1.2
360,604	-		GFF368	0.28	+0.1
360,612	-		GFF368	0.29	+1.1
360,622	+		GFF368	0.30	-1.4
360,634	+		GFF368	0.31	-1.6
360,649	+		GFF368	0.33	-0.3
360,649	+		GFF368	0.33	+0.8
360,657	-		GFF368	0.33	+1.2
360,657	-		GFF368	0.33	-1.7
360,657	-		GFF368	0.33	+0.2
360,657	-		GFF368	0.33	-2.0
360,657	-		GFF368	0.33	-0.6
360,657	-		GFF368	0.33	+0.2
360,657	-		GFF368	0.33	-1.3
360,657	-		GFF368	0.33	-1.0
360,657	-		GFF368	0.33	-1.4
360,657	-		GFF368	0.33	-0.8
360,657	-		GFF368	0.33	+1.1
360,657	-		GFF368	0.33	-0.3
360,657	-		GFF368	0.33	-0.7
360,672	+		GFF368	0.35	+1.7
360,675	+		GFF368	0.35	-0.3
360,698	-		GFF368	0.37	+0.5
360,709	+		GFF368	0.38	-0.8
360,729	+		GFF368	0.40	-0.0
360,729	+		GFF368	0.40	-2.0
360,730	+		GFF368	0.40	-0.4
360,735	+		GFF368	0.41	+0.4
360,752	+		GFF368	0.42	-1.1
360,755	-		GFF368	0.43	-0.1
360,800	+		GFF368	0.47	-0.7
360,802	+		GFF368	0.47	-1.8
360,808	-		GFF368	0.48	+0.6
360,827	-		GFF368	0.49	+0.9
360,827	-		GFF368	0.49	-1.1
360,828	-		GFF368	0.50	-0.5
360,857	-		GFF368	0.52	+0.5
360,869	+		GFF368	0.53	-0.9
360,877	-		GFF368	0.54	+1.7
360,903	+		GFF368	0.57	+0.1
360,907	-		GFF368	0.57	-0.6
360,908	+		GFF368	0.57	-0.1
360,908	+		GFF368	0.57	-1.3
360,908	+		GFF368	0.57	-0.5
360,908	+		GFF368	0.57	-1.4
360,909	+		GFF368	0.57	+0.0
360,916	-		GFF368	0.58	+1.7
360,919	-		GFF368	0.58	-1.0
360,933	+		GFF368	0.60	+0.2
360,936	-		GFF368	0.60	+0.8
360,941	-		GFF368	0.60	-2.4
360,944	+		GFF368	0.61	-1.9
360,944	+		GFF368	0.61	-0.2
360,959	-		GFF368	0.62	-1.2
360,965	-		GFF368	0.63	+0.9
360,971	+		GFF368	0.63	+1.0
360,971	+		GFF368	0.63	+0.1
360,979	-		GFF368	0.64	-0.5
360,983	+		GFF368	0.64	-0.7
361,027	+		GFF368	0.68	-1.0
361,028	+		GFF368	0.69	-1.3
361,035	-		GFF368	0.69	+0.5
361,035	-		GFF368	0.69	+1.2
361,038	+		GFF368	0.70	-0.5
361,038	+		GFF368	0.70	+1.1
361,045	-		GFF368	0.70	-0.1
361,046	+		GFF368	0.70	-0.9
361,046	-		GFF368	0.70	+0.7
361,049	+		GFF368	0.71	-0.1
361,049	+		GFF368	0.71	-2.2
361,049	+		GFF368	0.71	+0.0
361,049	+		GFF368	0.71	-0.6
361,053	-		GFF368	0.71	-0.3
361,057	-		GFF368	0.71	-1.0
361,144	+		GFF368	0.80	+0.5
361,144	+		GFF368	0.80	-0.5
361,149	+		GFF368	0.80	-1.6
361,149	+		GFF368	0.80	-1.0
361,150	-		GFF368	0.80	-0.3
361,152	-		GFF368	0.80	-0.9
361,154	+		GFF368	0.81	+0.5
361,154	+		GFF368	0.81	+0.2
361,157	-		GFF368	0.81	+0.4
361,157	-		GFF368	0.81	+0.1
361,157	-		GFF368	0.81	-0.5
361,157	-		GFF368	0.81	-0.0
361,161	+		GFF368	0.81	+0.7
361,171	+		GFF368	0.82	-0.0
361,192	-		GFF368	0.84	+0.5
361,203	+		GFF368	0.85	-0.2
361,245	+		GFF368	0.89	-0.1
361,253	-				-0.1
361,274	-				-2.0
361,274	-				-1.0
361,275	+				+0.2
361,283	-				+0.7
361,286	+				-1.6
361,294	-				-1.7
361,294	-				+0.1
361,294	-				+0.6
361,294	-				-0.9
361,301	+				-0.1
361,360	-				-0.4
361,361	-				+0.1
361,384	-				-1.9
361,413	+				-0.8
361,421	-				+0.5
361,421	-				-0.6
361,491	+				-0.7
361,500	+				-0.9
361,519	-				-0.3
361,538	-		GFF369	0.12	-0.6
361,563	+		GFF369	0.14	+0.9
361,564	+		GFF369	0.14	-0.7
361,566	-		GFF369	0.14	-1.5
361,572	+		GFF369	0.15	+1.0
361,579	-		GFF369	0.16	-1.3
361,581	+		GFF369	0.16	+0.9
361,581	+		GFF369	0.16	-0.2
361,581	+		GFF369	0.16	-0.3
361,581	+		GFF369	0.16	-0.2
361,581	+		GFF369	0.16	+1.7
361,589	-		GFF369	0.17	+1.2
361,589	-		GFF369	0.17	-0.3
361,589	-		GFF369	0.17	-0.1
361,589	-		GFF369	0.17	-0.4
361,589	-		GFF369	0.17	-0.6
361,590	-		GFF369	0.17	-1.8
361,597	+		GFF369	0.17	-0.3
361,600	-		GFF369	0.18	+0.1
361,604	-		GFF369	0.18	+0.6
361,669	-		GFF369	0.24	-0.7
361,686	+		GFF369	0.26	-1.7
361,694	-		GFF369	0.27	-1.5
361,742	-		GFF369	0.31	-0.9
361,758	+		GFF369	0.33	+1.1
361,758	+		GFF369	0.33	+0.5
361,758	+		GFF369	0.33	-1.1
361,766	+		GFF369	0.34	-1.3
361,766	+		GFF369	0.34	+0.1
361,766	+		GFF369	0.34	-0.6
361,766	-		GFF369	0.34	-1.3
361,766	-		GFF369	0.34	-0.7
361,766	-		GFF369	0.34	-0.3
361,769	+		GFF369	0.34	+0.5
361,771	+		GFF369	0.34	-1.5
361,771	+		GFF369	0.34	+1.2
361,771	+		GFF369	0.34	+0.3
361,774	-		GFF369	0.34	-0.4
361,779	-		GFF369	0.35	-2.0
361,831	+		GFF369	0.40	-0.3
361,838	+		GFF369	0.41	-0.5
361,845	-		GFF369	0.41	-0.7
361,860	+		GFF369	0.43	-1.2
361,860	+		GFF369	0.43	-0.1
361,860	+		GFF369	0.43	+0.4
361,860	+		GFF369	0.43	-0.7
361,865	+		GFF369	0.43	-0.9
361,865	+		GFF369	0.43	-0.6
361,865	+		GFF369	0.43	+0.0
361,865	+		GFF369	0.43	-1.6
361,865	+		GFF369	0.43	-0.4
361,868	-		GFF369	0.43	+0.9
361,868	-		GFF369	0.43	+0.4
361,868	-		GFF369	0.43	-0.5
361,868	-		GFF369	0.43	+0.9
361,872	+		GFF369	0.44	-0.6
361,873	-		GFF369	0.44	-0.9
361,873	-		GFF369	0.44	+0.5
361,873	-		GFF369	0.44	-0.8
361,892	+		GFF369	0.46	-1.2
361,897	+		GFF369	0.46	-0.9
361,900	-		GFF369	0.47	-0.9
361,902	+		GFF369	0.47	+1.2
361,902	+		GFF369	0.47	-0.3
361,923	-		GFF369	0.49	-0.9
361,925	+		GFF369	0.49	-1.0
361,934	-		GFF369	0.50	-1.1
361,946	+		GFF369	0.51	-1.0
361,948	-		GFF369	0.51	-1.3
361,951	+		GFF369	0.51	-0.2
361,958	-		GFF369	0.52	-0.9
361,993	-		GFF369	0.55	+0.4
361,995	-		GFF369	0.56	-1.0
362,011	+		GFF369	0.57	-0.6
362,011	+		GFF369	0.57	-1.1
362,011	+		GFF369	0.57	+0.5
362,011	+		GFF369	0.57	+0.5
362,012	+		GFF369	0.57	-1.3
362,017	+		GFF369	0.58	-0.1
362,019	-		GFF369	0.58	-0.7
362,019	-		GFF369	0.58	-0.2
362,019	-		GFF369	0.58	+1.6
362,025	-		GFF369	0.59	-1.6
362,025	-		GFF369	0.59	+1.1
362,061	-		GFF369	0.62	-0.2
362,079	+		GFF369	0.64	-0.2
362,084	+		GFF369	0.64	+1.8
362,084	+		GFF369	0.64	-1.0
362,084	+		GFF369	0.64	-1.8
362,084	+		GFF369	0.64	-1.5
362,084	+		GFF369	0.64	-1.8
362,084	+		GFF369	0.64	-1.5
362,090	+		GFF369	0.65	-0.3
362,092	-		GFF369	0.65	+0.2
362,092	-		GFF369	0.65	+1.0
362,107	+		GFF369	0.66	-0.8
362,115	-		GFF369	0.67	+1.0
362,115	-		GFF369	0.67	+0.3
362,115	-		GFF369	0.67	-0.8
362,115	-		GFF369	0.67	+1.1
362,115	-		GFF369	0.67	-1.9
362,124	+		GFF369	0.68	-0.3
362,129	+		GFF369	0.69	+1.5
362,135	+		GFF369	0.69	-1.0
362,135	+		GFF369	0.69	-0.2
362,162	+		GFF369	0.72	-0.2
362,162	+		GFF369	0.72	-2.0
362,162	+		GFF369	0.72	-0.5
362,162	+		GFF369	0.72	+0.4
362,162	+		GFF369	0.72	-2.2
362,170	-		GFF369	0.73	-0.5
362,170	-		GFF369	0.73	-1.0
362,170	-		GFF369	0.73	-2.0
362,175	-		GFF369	0.73	-0.7
362,182	+		GFF369	0.74	-0.2
362,182	+		GFF369	0.74	+0.1
362,200	-		GFF369	0.75	-1.1
362,234	+		GFF369	0.79	-1.5
362,234	+		GFF369	0.79	-1.3
362,241	+		GFF369	0.79	-1.1
362,242	-		GFF369	0.79	+0.4
362,242	-		GFF369	0.79	-0.8
362,242	-		GFF369	0.79	-1.0
362,242	-		GFF369	0.79	-1.0
362,242	-		GFF369	0.79	-1.1
362,242	-		GFF369	0.79	+0.1
362,242	-		GFF369	0.79	-0.5
362,242	-		GFF369	0.79	-1.1
362,248	-		GFF369	0.80	-0.5
362,249	-		GFF369	0.80	+0.7
362,267	+		GFF369	0.82	-0.7
362,277	+		GFF369	0.83	+0.1
362,277	+		GFF369	0.83	-0.6
362,277	+		GFF369	0.83	-0.8
362,277	+		GFF369	0.83	-0.6
362,297	+		GFF369	0.85	+1.5
362,299	+		GFF369	0.85	-1.6
362,299	+		GFF369	0.85	-0.7
362,300	-		GFF369	0.85	+0.0
362,307	-		GFF369	0.86	-0.2
362,320	-		GFF369	0.87	+0.9
362,320	-		GFF369	0.87	+1.0
362,326	+		GFF369	0.88	+1.4
362,328	+		GFF369	0.88	-0.8
362,330	-		GFF369	0.88	+0.0
362,336	+		GFF369	0.89	-1.1
362,337	-		GFF369	0.89	-1.0
362,337	-		GFF369	0.89	-0.2
362,339	-		GFF369	0.89	-0.1
362,339	-		GFF369	0.89	-0.3