Strain Fitness in Sphingobium sp. HT1-2 around GFF3667

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,708,700	-		GFF3665	0.87	-0.9
3,708,734	+		GFF3665	0.90	-0.5
3,708,736	+				+0.3
3,708,742	-				-0.5
3,708,750	+				-1.1
3,708,750	+				-1.5
3,708,794	+				-0.3
3,708,865	+				+0.6
3,708,898	+				-1.4
3,708,906	-				-0.0
3,708,916	+		GFF3666	0.11	-0.3
3,708,937	+		GFF3666	0.13	+1.5
3,708,937	+		GFF3666	0.13	-1.1
3,708,937	+		GFF3666	0.13	-0.7
3,708,951	+		GFF3666	0.15	+0.7
3,708,955	-		GFF3666	0.15	-0.8
3,708,959	-		GFF3666	0.16	+0.6
3,708,959	-		GFF3666	0.16	-0.1
3,708,959	-		GFF3666	0.16	-1.0
3,708,985	-		GFF3666	0.19	+0.3
3,708,995	-		GFF3666	0.20	+0.2
3,709,028	+		GFF3666	0.24	-1.0
3,709,042	+		GFF3666	0.25	-1.4
3,709,042	+		GFF3666	0.25	+1.1
3,709,049	+		GFF3666	0.26	-0.5
3,709,053	+		GFF3666	0.27	+0.8
3,709,053	+		GFF3666	0.27	+0.5
3,709,053	+		GFF3666	0.27	-1.5
3,709,053	+		GFF3666	0.27	-0.7
3,709,053	+		GFF3666	0.27	-2.5
3,709,053	+		GFF3666	0.27	+0.0
3,709,061	-		GFF3666	0.28	-0.2
3,709,061	-		GFF3666	0.28	+0.6
3,709,061	-		GFF3666	0.28	+0.1
3,709,061	-		GFF3666	0.28	-0.8
3,709,086	+		GFF3666	0.30	+0.7
3,709,086	+		GFF3666	0.30	+0.4
3,709,086	+		GFF3666	0.30	-0.9
3,709,086	+		GFF3666	0.30	-0.0
3,709,086	+		GFF3666	0.30	+0.3
3,709,086	+		GFF3666	0.30	+0.0
3,709,086	+		GFF3666	0.30	-0.3
3,709,086	+		GFF3666	0.30	-1.3
3,709,094	-		GFF3666	0.31	-0.5
3,709,094	-		GFF3666	0.31	+0.5
3,709,094	-		GFF3666	0.31	-0.2
3,709,094	-		GFF3666	0.31	+1.1
3,709,094	-		GFF3666	0.31	-0.3
3,709,094	-		GFF3666	0.31	+0.7
3,709,094	-		GFF3666	0.31	-0.8
3,709,094	-		GFF3666	0.31	-1.6
3,709,094	-		GFF3666	0.31	+0.3
3,709,094	-		GFF3666	0.31	-0.8
3,709,094	-		GFF3666	0.31	-0.9
3,709,094	-		GFF3666	0.31	+0.4
3,709,094	-		GFF3666	0.31	-0.9
3,709,094	-		GFF3666	0.31	-0.6
3,709,094	-		GFF3666	0.31	-0.7
3,709,095	+		GFF3666	0.32	-0.8
3,709,095	+		GFF3666	0.32	+0.8
3,709,108	-		GFF3666	0.33	-0.2
3,709,195	-		GFF3666	0.43	-0.9
3,709,201	-		GFF3666	0.44	-0.6
3,709,210	-		GFF3666	0.45	-0.1
3,709,228	-		GFF3666	0.47	-0.2
3,709,230	-		GFF3666	0.47	-0.3
3,709,238	+		GFF3666	0.48	-1.1
3,709,246	-		GFF3666	0.49	+0.1
3,709,248	+		GFF3666	0.49	-0.1
3,709,248	+		GFF3666	0.49	-0.1
3,709,248	+		GFF3666	0.49	-1.5
3,709,248	+		GFF3666	0.49	-2.2
3,709,256	-		GFF3666	0.50	+0.2
3,709,256	-		GFF3666	0.50	-0.9
3,709,256	-		GFF3666	0.50	-2.1
3,709,256	-		GFF3666	0.50	-1.6
3,709,258	+		GFF3666	0.50	-0.5
3,709,260	+		GFF3666	0.50	+0.2
3,709,276	+		GFF3666	0.52	-2.1
3,709,276	-		GFF3666	0.52	-0.5
3,709,284	-		GFF3666	0.53	+1.5
3,709,284	-		GFF3666	0.53	-2.0
3,709,286	+		GFF3666	0.53	-1.5
3,709,299	-		GFF3666	0.55	+0.3
3,709,299	-		GFF3666	0.55	-0.7
3,709,302	+		GFF3666	0.55	-1.9
3,709,302	+		GFF3666	0.55	-1.4
3,709,302	+		GFF3666	0.55	-0.1
3,709,304	-		GFF3666	0.55	+0.7
3,709,310	-		GFF3666	0.56	+0.5
3,709,310	-		GFF3666	0.56	-1.1
3,709,310	-		GFF3666	0.56	-0.5
3,709,326	+		GFF3666	0.58	+0.1
3,709,326	+		GFF3666	0.58	-2.3
3,709,354	-		GFF3666	0.61	-0.8
3,709,361	+		GFF3666	0.62	-0.9
3,709,369	-		GFF3666	0.63	+0.7
3,709,385	+		GFF3666	0.65	-0.0
3,709,387	+		GFF3666	0.65	-0.6
3,709,387	+		GFF3666	0.65	+0.2
3,709,387	+		GFF3666	0.65	+1.1
3,709,395	-		GFF3666	0.66	+0.1
3,709,395	-		GFF3666	0.66	-0.0
3,709,395	-		GFF3666	0.66	+0.1
3,709,395	-		GFF3666	0.66	-0.3
3,709,395	-		GFF3666	0.66	-1.6
3,709,405	-		GFF3666	0.67	-1.1
3,709,411	+		GFF3666	0.68	-0.6
3,709,411	+		GFF3666	0.68	-0.5
3,709,419	-		GFF3666	0.69	-0.3
3,709,419	-		GFF3666	0.69	+0.8
3,709,429	+		GFF3666	0.70	+0.0
3,709,440	+		GFF3666	0.71	-1.4
3,709,440	+		GFF3666	0.71	-0.0
3,709,440	+		GFF3666	0.71	-0.6
3,709,440	+		GFF3666	0.71	+0.5
3,709,440	+		GFF3666	0.71	-2.0
3,709,441	+		GFF3666	0.71	-1.0
3,709,446	+		GFF3666	0.72	-1.1
3,709,457	+		GFF3666	0.73	-1.1
3,709,457	+		GFF3666	0.73	-0.3
3,709,465	-		GFF3666	0.74	+0.3
3,709,465	-		GFF3666	0.74	-0.7
3,709,478	+		GFF3666	0.75	+1.9
3,709,480	+		GFF3666	0.76	-0.2
3,709,497	+		GFF3666	0.78	-0.3
3,709,497	+		GFF3666	0.78	-0.3
3,709,497	+		GFF3666	0.78	-0.9
3,709,497	+		GFF3666	0.78	-1.4
3,709,505	-		GFF3666	0.78	-1.7
3,709,505	-		GFF3666	0.78	-1.7
3,709,505	-		GFF3666	0.78	-1.0
3,709,505	-		GFF3666	0.78	+0.2
3,709,524	-		GFF3666	0.81	+0.0
3,709,571	-		GFF3666	0.86	+0.6
3,709,602	+		GFF3666	0.90	-1.3
3,709,602	+		GFF3666	0.90	+0.2
3,709,610	-				-1.6
3,709,610	-				-1.5
3,709,615	-				-1.3
3,709,656	+				+1.3
3,709,663	+				-2.3
3,709,663	+				-1.8
3,709,677	+				+0.0
3,709,681	+				-0.2
3,709,694	-				-0.3
3,709,700	-				-0.3
3,709,707	-				-1.0
3,709,707	-				+0.3
3,709,729	+				+0.6
3,709,748	-				+0.1
3,709,753	+				-0.8
3,709,758	+				+1.3
3,709,758	+				-0.3
3,709,766	-				-0.6
3,709,774	+				-1.6
3,709,774	+				-0.6
3,709,774	+				-0.6
3,709,774	+				+0.4
3,709,774	+				-1.9
3,709,782	-				+0.3
3,709,782	-				-0.8
3,709,782	-				-0.7
3,709,787	-				-0.1
3,709,797	+				+0.3
3,709,797	+				-1.8
3,709,800	-				+0.9
3,709,802	+		GFF3667	0.10	+0.9
3,709,807	+		GFF3667	0.10	-1.0
3,709,815	-		GFF3667	0.11	+1.1
3,709,822	+		GFF3667	0.12	-1.0
3,709,830	-		GFF3667	0.12	-1.6
3,709,841	-		GFF3667	0.13	-1.1
3,709,858	+		GFF3667	0.15	+1.0
3,709,865	+		GFF3667	0.16	-1.0
3,709,890	+		GFF3667	0.18	-0.1
3,709,890	+		GFF3667	0.18	-1.4
3,709,890	+		GFF3667	0.18	+1.4
3,709,890	+		GFF3667	0.18	+1.1
3,709,890	+		GFF3667	0.18	-1.1
3,709,890	+		GFF3667	0.18	-0.1
3,709,890	+		GFF3667	0.18	-0.0
3,709,890	+		GFF3667	0.18	+0.7
3,709,890	+		GFF3667	0.18	-3.1
3,709,890	+		GFF3667	0.18	-0.3
3,709,890	+		GFF3667	0.18	-1.1
3,709,890	+		GFF3667	0.18	+0.4
3,709,890	+		GFF3667	0.18	-0.2
3,709,890	+		GFF3667	0.18	-1.9
3,709,890	+		GFF3667	0.18	-1.0
3,709,898	-		GFF3667	0.18	-0.6
3,709,898	-		GFF3667	0.18	-0.5
3,709,898	-		GFF3667	0.18	-0.3
3,709,898	-		GFF3667	0.18	-1.9
3,709,898	-		GFF3667	0.18	+1.0
3,709,898	-		GFF3667	0.18	+0.1
3,709,898	-		GFF3667	0.18	-0.2
3,709,898	-		GFF3667	0.18	-0.1
3,709,898	-		GFF3667	0.18	-1.8
3,709,898	-		GFF3667	0.18	-0.7
3,709,898	-		GFF3667	0.18	-0.7
3,709,898	-		GFF3667	0.18	-0.7
3,709,898	-		GFF3667	0.18	-0.7
3,709,955	+		GFF3667	0.24	-0.7
3,709,955	+		GFF3667	0.24	-1.1
3,709,955	+		GFF3667	0.24	+0.1
3,709,963	-		GFF3667	0.24	+0.1
3,710,017	-		GFF3667	0.29	+0.0
3,710,078	-		GFF3667	0.34	+0.1
3,710,086	+		GFF3667	0.35	-1.0
3,710,091	+		GFF3667	0.36	-1.8
3,710,091	+		GFF3667	0.36	+0.0
3,710,104	-		GFF3667	0.37	+0.4
3,710,105	+		GFF3667	0.37	+0.1
3,710,105	+		GFF3667	0.37	-0.5
3,710,105	+		GFF3667	0.37	-0.8
3,710,120	+		GFF3667	0.38	+1.0
3,710,120	+		GFF3667	0.38	-0.7
3,710,121	-		GFF3667	0.38	-0.3
3,710,128	-		GFF3667	0.39	-0.6
3,710,141	+		GFF3667	0.40	-1.8
3,710,160	-		GFF3667	0.42	+1.1
3,710,164	+		GFF3667	0.42	+0.5
3,710,172	-		GFF3667	0.43	-0.1
3,710,174	+		GFF3667	0.43	+0.0
3,710,174	+		GFF3667	0.43	+0.0
3,710,182	-		GFF3667	0.44	+0.2
3,710,182	-		GFF3667	0.44	-1.1
3,710,193	+		GFF3667	0.45	-0.8
3,710,200	-		GFF3667	0.45	-2.3
3,710,217	+		GFF3667	0.47	-1.1
3,710,219	+		GFF3667	0.47	-0.6
3,710,225	-		GFF3667	0.47	-0.5
3,710,225	-		GFF3667	0.47	-0.5
3,710,255	+		GFF3667	0.50	+0.2
3,710,266	+		GFF3667	0.51	+0.1
3,710,275	-		GFF3667	0.52	-0.7
3,710,296	+		GFF3667	0.54	-1.0
3,710,299	-		GFF3667	0.54	-1.3
3,710,299	-		GFF3667	0.54	-0.5
3,710,318	+		GFF3667	0.56	-1.4
3,710,318	+		GFF3667	0.56	-0.8
3,710,323	+		GFF3667	0.56	-1.1
3,710,326	-		GFF3667	0.56	-0.0
3,710,334	+		GFF3667	0.57	-1.1
3,710,339	+		GFF3667	0.57	-0.1
3,710,346	+		GFF3667	0.58	-1.9
3,710,354	-		GFF3667	0.59	-1.2
3,710,362	-		GFF3667	0.60	-0.3
3,710,375	+		GFF3667	0.61	-0.2
3,710,378	-		GFF3667	0.61	+1.7
3,710,383	-		GFF3667	0.61	-1.4
3,710,405	+		GFF3667	0.63	-1.5
3,710,420	+		GFF3667	0.65	-0.8
3,710,420	+		GFF3667	0.65	-0.7
3,710,420	+		GFF3667	0.65	+0.1
3,710,443	-		GFF3667	0.67	-1.1
3,710,464	+		GFF3667	0.69	-0.9
3,710,464	+		GFF3667	0.69	+0.0
3,710,464	-		GFF3667	0.69	+0.2
3,710,497	+		GFF3667	0.71	-0.3
3,710,502	+		GFF3667	0.72	+1.1
3,710,502	+		GFF3667	0.72	-0.3
3,710,502	+		GFF3667	0.72	+0.0
3,710,505	-		GFF3667	0.72	+0.3
3,710,510	-		GFF3667	0.73	-1.0
3,710,510	-		GFF3667	0.73	+1.5
3,710,517	+		GFF3667	0.73	-0.9
3,710,520	-		GFF3667	0.73	-1.2
3,710,522	+		GFF3667	0.74	-0.7
3,710,525	-		GFF3667	0.74	-0.7
3,710,546	+		GFF3667	0.76	+1.1
3,710,583	+		GFF3667	0.79	+0.1
3,710,592	+		GFF3667	0.80	-1.2
3,710,594	+		GFF3667	0.80	+0.4
3,710,607	-		GFF3667	0.81	-0.6
3,710,610	-		GFF3667	0.81	-0.5
3,710,619	+		GFF3667	0.82	-0.7
3,710,629	+		GFF3667	0.83	-0.7
3,710,647	+		GFF3667	0.85	-1.3
3,710,654	-		GFF3667	0.85	-1.4
3,710,657	+		GFF3667	0.86	-0.8
3,710,657	+		GFF3667	0.86	+0.1
3,710,665	-		GFF3667	0.86	+1.3
3,710,673	-		GFF3667	0.87	+1.1
3,710,709	+				-2.2
3,710,716	+				-1.0
3,710,716	+				+0.2
3,710,723	-				-1.2
3,710,723	-				-1.6
3,710,728	+				-0.9
3,710,728	+				-1.2
3,710,728	+				-0.7
3,710,729	-				+0.5
3,710,734	+				-0.5
3,710,734	+				-1.0
3,710,736	-				+0.5
3,710,742	-				-0.7
3,710,742	-				-0.6
3,710,744	+				-0.3
3,710,770	+				+0.6
3,710,782	-				+0.2
3,710,796	+				-1.9
3,710,796	+				+0.7
3,710,796	+				-0.9
3,710,796	+				-0.5
3,710,796	+				+0.3
3,710,800	+				-0.7
3,710,800	+				-0.7
3,710,804	-				+0.9
3,710,804	-				+0.0
3,710,815	+				-0.8
3,710,815	+				+0.9
3,710,815	+				-1.5
3,710,816	-				+0.3
3,710,820	+				-0.5
3,710,820	+				+0.0
3,710,823	-				-0.1
3,710,823	-				+0.0
3,710,823	-				-1.5
3,710,823	-				-1.2
3,710,828	-				-1.0
3,710,828	-				-0.1
3,710,864	+				-1.3
3,710,864	+				+0.7
3,710,864	+				-0.7
3,710,876	+				+0.2
3,710,884	-				-0.7
3,710,886	+				-0.6
3,710,904	-				+1.2
3,710,910	+				+1.1
3,710,912	+				-0.3
3,710,920	-				-2.9
3,710,920	-				-0.0
3,710,920	-				-0.6
3,710,920	-				-0.7
3,710,951	-				+0.7
3,710,988	+				-1.0
3,711,002	-				+1.5
3,711,006	+				-0.2
3,711,054	+				-0.4
3,711,069	-				+0.4
3,711,104	+		GFF3668	0.11	-1.6
3,711,104	+		GFF3668	0.11	+0.6
3,711,107	+		GFF3668	0.11	-0.7
3,711,114	-		GFF3668	0.12	-0.9
3,711,117	+		GFF3668	0.12	-1.1
3,711,119	-		GFF3668	0.12	-0.7
3,711,150	+		GFF3668	0.15	-0.7
3,711,163	+		GFF3668	0.17	-0.5
3,711,165	+		GFF3668	0.17	+0.8
3,711,165	+		GFF3668	0.17	-1.3
3,711,165	-		GFF3668	0.17	-1.3
3,711,171	-		GFF3668	0.17	-0.2
3,711,173	+		GFF3668	0.18	-1.0
3,711,173	-		GFF3668	0.18	-1.2
3,711,178	+		GFF3668	0.18	+0.7
3,711,178	-		GFF3668	0.18	+1.1
3,711,216	+		GFF3668	0.22	+0.1
3,711,251	-		GFF3668	0.25	+0.5
3,711,268	-		GFF3668	0.27	+1.5
3,711,269	-		GFF3668	0.27	-0.7
3,711,282	+		GFF3668	0.28	-1.3
3,711,282	+		GFF3668	0.28	-1.5
3,711,290	-		GFF3668	0.29	-1.9
3,711,296	+		GFF3668	0.30	+0.8
3,711,303	-		GFF3668	0.31	-0.8
3,711,303	-		GFF3668	0.31	+0.1
3,711,304	-		GFF3668	0.31	+0.8
3,711,305	+		GFF3668	0.31	-0.7
3,711,306	+		GFF3668	0.31	-0.0
3,711,322	+		GFF3668	0.32	-0.3
3,711,322	+		GFF3668	0.32	-1.5
3,711,330	-		GFF3668	0.33	+0.1
3,711,342	+		GFF3668	0.34	+1.2
3,711,358	-		GFF3668	0.36	-0.0
3,711,369	+		GFF3668	0.37	-0.1
3,711,369	+		GFF3668	0.37	-0.5
3,711,369	+		GFF3668	0.37	+0.5
3,711,370	+		GFF3668	0.37	+0.3
3,711,370	+		GFF3668	0.37	+1.9
3,711,370	+		GFF3668	0.37	+0.9
3,711,377	-		GFF3668	0.38	-1.5
3,711,377	-		GFF3668	0.38	-0.7
3,711,377	-		GFF3668	0.38	+0.0
3,711,377	-		GFF3668	0.38	-1.1
3,711,378	-		GFF3668	0.38	+0.1
3,711,386	+		GFF3668	0.39	-1.3
3,711,391	-		GFF3668	0.39	-0.7
3,711,403	+		GFF3668	0.41	-0.6
3,711,403	+		GFF3668	0.41	+0.3
3,711,408	+		GFF3668	0.41	-0.3
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3,711,416	-		GFF3668	0.42	-0.2
3,711,434	+		GFF3668	0.44	+0.5
3,711,440	+		GFF3668	0.44	-0.8
3,711,456	-		GFF3668	0.46	-0.1
3,711,481	+		GFF3668	0.48	-0.9
3,711,489	-		GFF3668	0.49	-2.0
3,711,490	+		GFF3668	0.49	-0.3
3,711,503	-		GFF3668	0.51	-1.2
3,711,505	+		GFF3668	0.51	-1.6
3,711,505	+		GFF3668	0.51	+0.1
3,711,505	+		GFF3668	0.51	-0.3
3,711,508	-		GFF3668	0.51	+1.1
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3,711,513	-		GFF3668	0.52	-1.3
3,711,513	-		GFF3668	0.52	-1.7
3,711,530	-		GFF3668	0.53	-0.2
3,711,547	+		GFF3668	0.55	+0.6
3,711,549	+		GFF3668	0.55	-0.5
3,711,556	+		GFF3668	0.56	-0.3
3,711,556	+		GFF3668	0.56	-1.8
3,711,556	+		GFF3668	0.56	-0.6
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3,711,610	+		GFF3668	0.61	+0.8
3,711,614	+		GFF3668	0.62	-0.3
3,711,616	+		GFF3668	0.62	-1.9
3,711,616	+		GFF3668	0.62	-2.2
3,711,616	+		GFF3668	0.62	+0.3
3,711,618	-		GFF3668	0.62	-1.7
3,711,623	-		GFF3668	0.63	-1.0
3,711,624	-		GFF3668	0.63	+0.1
3,711,633	-		GFF3668	0.64	-0.6
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3,711,646	-		GFF3668	0.65	-2.3
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3,711,693	-		GFF3668	0.70	-0.5
3,711,762	+		GFF3668	0.76	-1.3
3,711,801	+		GFF3668	0.80	+1.9
3,711,816	+		GFF3668	0.82	-1.3
3,711,816	+		GFF3668	0.82	-1.0
3,711,819	-		GFF3668	0.82	-0.2
3,711,819	-		GFF3668	0.82	-0.4