Strain Fitness in Sphingobium sp. HT1-2 around GFF3640

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,685,829	-		GFF3637	0.83	-1.4
3,685,838	-				+0.3
3,685,838	-				+0.6
3,685,862	-				-1.4
3,685,870	-				+0.7
3,685,870	-				-0.9
3,685,870	-				-0.3
3,685,870	-				-1.0
3,685,920	+				-0.5
3,685,945	+				-1.3
3,685,945	+				-1.7
3,685,945	+				+0.0
3,685,945	+				-1.4
3,685,953	-				-2.2
3,685,953	-				+0.6
3,685,953	-				-1.2
3,685,953	-				-1.9
3,685,953	-				-0.6
3,685,953	-				-0.3
3,685,955	+				+0.8
3,685,960	+				-1.3
3,685,960	+				+0.8
3,685,960	+				-1.2
3,685,963	-				+0.4
3,685,963	-				-0.3
3,685,965	+		GFF3638	0.11	+0.2
3,685,968	-		GFF3638	0.13	-1.0
3,685,968	-		GFF3638	0.13	+0.7
3,685,968	-		GFF3638	0.13	-0.7
3,685,968	-		GFF3638	0.13	-0.0
3,685,968	-		GFF3638	0.13	-0.6
3,685,968	-		GFF3638	0.13	+0.1
3,685,970	+		GFF3638	0.14	-1.1
3,685,971	-		GFF3638	0.15	-0.6
3,685,977	+		GFF3638	0.19	-0.3
3,685,977	+		GFF3638	0.19	-0.5
3,685,977	+		GFF3638	0.19	-0.8
3,685,977	+		GFF3638	0.19	-1.9
3,685,982	+		GFF3638	0.22	-1.2
3,685,985	-		GFF3638	0.24	+0.1
3,685,985	-		GFF3638	0.24	-0.7
3,685,985	-		GFF3638	0.24	-0.5
3,685,990	+		GFF3638	0.27	-0.6
3,686,000	-		GFF3638	0.34	-1.0
3,686,001	+		GFF3638	0.35	+0.4
3,686,004	-		GFF3638	0.37	+1.4
3,686,011	+		GFF3638	0.41	-0.4
3,686,046	-		GFF3638	0.64	+1.6
3,686,054	+		GFF3638	0.69	-1.6
3,686,054	+		GFF3638	0.69	-1.2
3,686,071	-		GFF3638	0.80	+0.4
3,686,072	+		GFF3638	0.81	-0.5
3,686,073	+		GFF3638	0.82	+0.0
3,686,075	-		GFF3638	0.83	-0.5
3,686,075	-		GFF3638	0.83	+0.1
3,686,075	-		GFF3638	0.83	-1.2
3,686,091	+				-0.7
3,686,104	-				-1.8
3,686,109	-				+0.0
3,686,111	+				+0.5
3,686,111	+				+0.0
3,686,115	-				-1.3
3,686,121	+				+0.1
3,686,132	+				-1.9
3,686,132	+				+0.2
3,686,140	-				+1.4
3,686,140	-				+0.2
3,686,150	-				-0.7
3,686,156	-				+0.2
3,686,156	-				+0.1
3,686,409	+				-0.5
3,686,409	+				-1.6
3,686,409	+				-0.6
3,686,409	+				-2.2
3,686,411	+				+1.0
3,686,411	+				+0.3
3,686,450	-				-0.5
3,686,460	+				-1.5
3,686,486	+				-0.5
3,686,486	+				-0.5
3,686,494	-				-0.8
3,686,494	-				+0.0
3,686,494	-				-1.8
3,686,516	-				-0.8
3,686,530	+				+0.5
3,686,541	+				+0.1
3,686,562	+				-0.8
3,686,586	-				-1.3
3,686,596	+				+0.2
3,686,602	+				+0.3
3,686,612	+				+0.4
3,686,612	+				-1.4
3,686,614	-				-0.6
3,686,614	-				+0.4
3,686,629	-				+1.5
3,686,659	-				-1.4
3,686,659	-				+0.2
3,686,660	-				+0.1
3,686,677	-				-1.0
3,686,687	-				+2.0
3,686,694	+				-1.5
3,686,702	-				+0.9
3,686,717	-				-0.8
3,686,740	-				+0.6
3,686,741	-				+0.7
3,686,741	-				+0.7
3,686,742	-				-2.7
3,686,744	-				-1.0
3,686,752	-				+0.1
3,686,753	+				+0.4
3,686,754	+				-0.0
3,686,787	+				-1.7
3,686,787	+				-0.9
3,686,787	+				+0.2
3,686,787	+				-1.8
3,686,793	-				-1.7
3,686,795	-				-1.1
3,686,807	-				-2.3
3,686,829	-				-0.7
3,686,835	+				+1.2
3,686,856	+				-1.4
3,686,856	+				+0.4
3,686,856	+				+0.0
3,686,856	+				-1.1
3,686,856	+				+0.5
3,686,858	+				-1.0
3,686,864	+				-0.3
3,686,864	-				+1.8
3,686,864	-				-2.0
3,686,864	-				-0.1
3,686,864	-				-2.6
3,686,864	-				-1.0
3,686,864	-				+0.7
3,686,864	-				+0.6
3,686,864	-				+1.4
3,686,864	-				-1.4
3,686,864	-				-1.7
3,686,864	-				+0.8
3,686,864	-				-1.1
3,686,864	-				+0.5
3,686,864	-				-0.7
3,686,866	+				+0.9
3,686,866	+				+0.1
3,686,912	+		GFF3640	0.21	-0.7
3,686,920	-		GFF3640	0.23	+0.0
3,686,920	-		GFF3640	0.23	+0.7
3,686,958	+		GFF3640	0.33	-1.5
3,686,958	+		GFF3640	0.33	+1.7
3,686,958	+		GFF3640	0.33	-0.8
3,686,958	+		GFF3640	0.33	-0.5
3,686,958	+		GFF3640	0.33	-0.8
3,686,958	+		GFF3640	0.33	+1.1
3,686,958	+		GFF3640	0.33	-1.1
3,686,958	+		GFF3640	0.33	-0.8
3,686,958	+		GFF3640	0.33	+1.1
3,686,958	+		GFF3640	0.33	-1.2
3,686,958	+		GFF3640	0.33	-1.4
3,686,958	+		GFF3640	0.33	-1.6
3,686,958	+		GFF3640	0.33	-0.2
3,686,958	+		GFF3640	0.33	+0.2
3,686,959	+		GFF3640	0.33	-0.0
3,686,966	-		GFF3640	0.35	-1.3
3,686,966	-		GFF3640	0.35	-0.5
3,686,966	-		GFF3640	0.35	+0.5
3,686,966	-		GFF3640	0.35	-1.1
3,686,966	-		GFF3640	0.35	-1.3
3,686,966	-		GFF3640	0.35	-0.9
3,686,966	-		GFF3640	0.35	-0.9
3,686,966	-		GFF3640	0.35	-0.5
3,686,966	-		GFF3640	0.35	+0.6
3,686,966	-		GFF3640	0.35	-0.4
3,686,966	-		GFF3640	0.35	-0.6
3,686,966	-		GFF3640	0.35	-0.8
3,686,966	-		GFF3640	0.35	-0.3
3,686,966	-		GFF3640	0.35	-1.0
3,686,996	+		GFF3640	0.42	-1.3
3,686,996	+		GFF3640	0.42	+0.1
3,686,996	+		GFF3640	0.42	-0.3
3,686,999	-		GFF3640	0.43	-0.2
3,687,001	+		GFF3640	0.44	+1.3
3,687,001	+		GFF3640	0.44	+0.2
3,687,004	-		GFF3640	0.44	+1.4
3,687,004	-		GFF3640	0.44	-0.5
3,687,004	-		GFF3640	0.44	+1.7
3,687,009	-		GFF3640	0.46	-0.9
3,687,009	-		GFF3640	0.46	+0.6
3,687,015	+		GFF3640	0.47	+1.5
3,687,024	-		GFF3640	0.49	-1.6
3,687,030	+		GFF3640	0.51	-0.9
3,687,030	+		GFF3640	0.51	-0.8
3,687,036	+		GFF3640	0.53	-1.4
3,687,036	+		GFF3640	0.53	-1.0
3,687,036	+		GFF3640	0.53	-1.8
3,687,036	+		GFF3640	0.53	-0.5
3,687,036	+		GFF3640	0.53	+0.7
3,687,036	+		GFF3640	0.53	-0.9
3,687,038	+		GFF3640	0.53	-1.4
3,687,038	-		GFF3640	0.53	-0.6
3,687,038	-		GFF3640	0.53	+1.3
3,687,038	-		GFF3640	0.53	+0.2
3,687,039	-		GFF3640	0.53	-1.2
3,687,044	-		GFF3640	0.55	-2.0
3,687,044	-		GFF3640	0.55	+0.2
3,687,044	-		GFF3640	0.55	-1.4
3,687,044	-		GFF3640	0.55	-0.5
3,687,046	+		GFF3640	0.55	-0.3
3,687,046	+		GFF3640	0.55	+1.1
3,687,046	+		GFF3640	0.55	+0.1
3,687,046	+		GFF3640	0.55	-0.5
3,687,054	-		GFF3640	0.57	-0.9
3,687,054	-		GFF3640	0.57	-0.7
3,687,054	-		GFF3640	0.57	-1.1
3,687,054	-		GFF3640	0.57	-0.5
3,687,072	+		GFF3640	0.62	-0.0
3,687,077	+		GFF3640	0.63	-1.3
3,687,078	+		GFF3640	0.63	-0.7
3,687,080	-		GFF3640	0.64	-0.5
3,687,085	-		GFF3640	0.65	+0.7
3,687,089	-		GFF3640	0.66	-0.9
3,687,099	+		GFF3640	0.68	-0.4
3,687,099	+		GFF3640	0.68	+1.5
3,687,118	+		GFF3640	0.73	+0.1
3,687,185	+				+0.4
3,687,193	-				-0.6
3,687,193	-				+0.2
3,687,193	-				-1.6
3,687,195	+				-0.9
3,687,418	+				-1.7
3,687,461	+				+0.7
3,687,463	+				-1.6
3,687,463	+				+1.0
3,687,471	-				-0.6
3,687,494	+				-0.5
3,687,626	-		GFF3641	0.49	-1.0
3,687,630	+		GFF3641	0.50	-0.9
3,687,686	-		GFF3641	0.69	-0.5
3,687,738	-		GFF3641	0.85	+0.7
3,687,748	+		GFF3641	0.89	-0.3
3,687,748	+		GFF3641	0.89	-0.2
3,687,748	+		GFF3641	0.89	-1.4
3,687,748	+		GFF3641	0.89	-0.9
3,687,756	-				-1.9
3,687,756	-				+0.6
3,687,756	-				-1.5
3,687,756	-				-0.2
3,687,758	+				-1.4
3,687,766	-				-0.6
3,687,823	-				+0.5
3,687,823	-				-1.5
3,687,833	-				+1.2
3,687,845	+				+0.7
3,687,845	+				-0.8
3,687,846	+				+1.0
3,687,846	+				+1.3
3,687,846	+				-1.2
3,687,846	-				+0.3
3,687,854	-				+0.6
3,687,854	-				-0.9
3,687,854	-				-1.3
3,687,854	-				+0.4
3,687,854	-				+0.9
3,687,857	+				-1.3
3,687,857	+				+1.0
3,687,857	+				-1.0
3,687,859	-				-0.0
3,687,862	+				-0.1
3,687,865	-				-1.0
3,687,867	+				-0.7
3,687,867	+				+0.3
3,687,877	-				-0.5
3,687,940	-				-0.5
3,687,940	-				-0.5
3,687,940	-				-0.3
3,687,940	-				-0.4
3,687,940	-				+0.8
3,687,940	-				+0.5
3,687,940	-				-0.7
3,687,940	-				-0.2
3,687,940	-				+1.3
3,688,088	+		GFF3642	0.27	+0.2
3,688,088	+		GFF3642	0.27	+0.8
3,688,098	+		GFF3642	0.30	+0.2
3,688,114	+		GFF3642	0.35	+1.4
3,688,116	+		GFF3642	0.35	-0.7
3,688,116	+		GFF3642	0.35	-1.0
3,688,116	+		GFF3642	0.35	-0.2
3,688,116	+		GFF3642	0.35	-1.7
3,688,121	+		GFF3642	0.37	-1.0
3,688,121	+		GFF3642	0.37	-0.8
3,688,121	+		GFF3642	0.37	+1.2
3,688,121	+		GFF3642	0.37	+0.4
3,688,121	+		GFF3642	0.37	+0.2
3,688,121	+		GFF3642	0.37	-0.3
3,688,121	+		GFF3642	0.37	-0.9
3,688,122	-		GFF3642	0.37	-2.1
3,688,122	-		GFF3642	0.37	+0.3
3,688,124	-		GFF3642	0.38	+1.5
3,688,126	+		GFF3642	0.38	+0.4
3,688,126	+		GFF3642	0.38	+0.7
3,688,126	+		GFF3642	0.38	-0.5
3,688,126	+		GFF3642	0.38	-1.1
3,688,126	+		GFF3642	0.38	-0.2
3,688,129	-		GFF3642	0.39	-1.5
3,688,129	-		GFF3642	0.39	-1.2
3,688,129	-		GFF3642	0.39	-0.3
3,688,129	-		GFF3642	0.39	-0.7
3,688,129	-		GFF3642	0.39	+0.1
3,688,129	-		GFF3642	0.39	-0.9
3,688,129	-		GFF3642	0.39	+1.0
3,688,129	-		GFF3642	0.39	+0.9
3,688,129	-		GFF3642	0.39	-0.9
3,688,131	+		GFF3642	0.40	-0.9
3,688,134	-		GFF3642	0.40	-0.0
3,688,140	+		GFF3642	0.42	-1.5
3,688,142	+		GFF3642	0.43	-1.2
3,688,148	+		GFF3642	0.44	-0.9
3,688,148	+		GFF3642	0.44	-1.4
3,688,149	+		GFF3642	0.45	-0.3
3,688,149	+		GFF3642	0.45	-1.0
3,688,150	+		GFF3642	0.45	-0.0
3,688,150	+		GFF3642	0.45	+0.3
3,688,150	-		GFF3642	0.45	-0.3
3,688,150	-		GFF3642	0.45	-0.5
3,688,157	-		GFF3642	0.47	-1.9
3,688,157	-		GFF3642	0.47	+0.1
3,688,157	-		GFF3642	0.47	-1.0
3,688,157	-		GFF3642	0.47	-0.3
3,688,158	-		GFF3642	0.47	-1.5
3,688,158	-		GFF3642	0.47	+0.1
3,688,158	-		GFF3642	0.47	+0.9
3,688,159	+		GFF3642	0.48	+0.2
3,688,167	-		GFF3642	0.50	+0.7
3,688,167	-		GFF3642	0.50	+1.0
3,688,167	-		GFF3642	0.50	-2.0
3,688,168	+		GFF3642	0.50	+0.1
3,688,168	-		GFF3642	0.50	+1.1
3,688,169	+		GFF3642	0.50	-0.5
3,688,169	+		GFF3642	0.50	+0.7
3,688,169	+		GFF3642	0.50	+0.2
3,688,169	+		GFF3642	0.50	-0.9
3,688,171	+		GFF3642	0.51	-0.8
3,688,171	+		GFF3642	0.51	+0.0
3,688,171	+		GFF3642	0.51	+1.0
3,688,171	+		GFF3642	0.51	-0.3
3,688,171	+		GFF3642	0.51	-0.7
3,688,174	-		GFF3642	0.52	-1.6
3,688,177	-		GFF3642	0.53	+0.1
3,688,177	-		GFF3642	0.53	+0.3
3,688,179	-		GFF3642	0.53	-0.6
3,688,179	-		GFF3642	0.53	-0.1
3,688,179	-		GFF3642	0.53	-0.2
3,688,179	-		GFF3642	0.53	-1.2
3,688,179	-		GFF3642	0.53	+1.4
3,688,179	-		GFF3642	0.53	-1.9
3,688,179	-		GFF3642	0.53	-0.7
3,688,202	+		GFF3642	0.60	+0.4
3,688,202	+		GFF3642	0.60	-1.3
3,688,210	-		GFF3642	0.62	-0.0
3,688,210	-		GFF3642	0.62	+0.8
3,688,211	-		GFF3642	0.62	-2.0