Strain Fitness in Sphingobium sp. HT1-2 around GFF3579

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,625,551	+		GFF3578	0.69	+0.4
3,625,556	+		GFF3578	0.70	+0.9
3,625,556	+		GFF3578	0.70	-0.4
3,625,556	+		GFF3578	0.70	-1.1
3,625,564	-		GFF3578	0.73	-0.3
3,625,568	+		GFF3578	0.74	-0.7
3,625,568	+		GFF3578	0.74	-0.3
3,625,576	-		GFF3578	0.76	-0.4
3,625,583	-		GFF3578	0.78	-0.3
3,625,590	+		GFF3578	0.80	-0.3
3,625,598	-		GFF3578	0.82	-1.1
3,625,671	+				-0.7
3,625,706	-				-1.6
3,625,706	-				-1.1
3,625,706	-				-1.0
3,625,716	+				+0.2
3,625,716	+				-0.2
3,625,716	+				-0.7
3,625,720	-				-0.4
3,625,734	+				-0.5
3,625,753	-				-1.5
3,625,760	+				-1.1
3,625,809	+				-2.1
3,625,875	-				+0.4
3,625,965	-				+0.6
3,625,977	-				-1.1
3,626,003	-				-1.0
3,626,018	-				+0.9
3,626,093	-				+0.5
3,626,095	+				-1.2
3,626,101	-				+0.8
3,626,110	-				-1.5
3,626,115	-				+0.7
3,626,153	-				-1.1
3,626,170	-				+0.4
3,626,179	+				-1.2
3,626,179	+				-1.1
3,626,179	+				-0.9
3,626,179	+				-0.2
3,626,179	+				+0.7
3,626,179	+				+0.5
3,626,179	+				-1.7
3,626,179	+				-0.4
3,626,179	+				+0.4
3,626,179	+				+0.6
3,626,186	+				-0.3
3,626,186	+				-0.3
3,626,187	-				-0.9
3,626,187	-				-0.7
3,626,187	-				-0.3
3,626,187	-				-0.8
3,626,187	-				-0.6
3,626,187	-				+1.0
3,626,187	-				-0.3
3,626,187	-				-0.7
3,626,187	-				+0.4
3,626,187	-				-0.2
3,626,187	-				-1.0
3,626,187	-				+0.8
3,626,187	-				-0.5
3,626,187	-				-0.8
3,626,194	-				-1.9
3,626,194	-				-0.6
3,626,194	-				+0.2
3,626,194	-				+1.5
3,626,194	-				+1.3
3,626,194	-				+0.2
3,626,194	-				+0.0
3,626,194	-				-0.8
3,626,195	-				+0.7
3,626,197	-				+0.5
3,626,204	-				-0.6
3,626,205	+				+0.3
3,626,205	+				-0.6
3,626,205	+				-0.5
3,626,205	-				-0.8
3,626,205	-				-1.1
3,626,205	-				-0.6
3,626,205	-				-0.6
3,626,205	-				+0.8
3,626,205	-				+0.5
3,626,207	+				+0.8
3,626,213	-				+1.1
3,626,224	-				-0.3
3,626,229	+				+0.5
3,626,229	-				+0.4
3,626,230	-				+1.5
3,626,235	+				+0.8
3,626,235	+				-1.5
3,626,236	+				+2.0
3,626,236	+				+0.8
3,626,237	+				-1.9
3,626,237	-				+0.7
3,626,237	-				-1.2
3,626,243	-				+0.7
3,626,264	+				-0.4
3,626,277	+				-0.7
3,626,285	-				-0.8
3,626,306	+				-1.8
3,626,309	-				+0.9
3,626,313	-				-0.6
3,626,316	+				-0.7
3,626,320	+				-1.0
3,626,320	+				-0.3
3,626,320	+				+0.5
3,626,320	+				-0.7
3,626,320	+				-0.3
3,626,320	+				-0.3
3,626,324	-				+1.2
3,626,328	-				+0.2
3,626,328	-				-0.5
3,626,328	-				-1.4
3,626,328	-				-0.6
3,626,328	-				+1.0
3,626,333	-				-2.0
3,626,335	+				-1.1
3,626,335	+				-0.5
3,626,335	+				-0.6
3,626,335	+				-1.2
3,626,335	+				-0.6
3,626,335	+				-1.1
3,626,335	+				-1.1
3,626,337	+				+0.3
3,626,338	-				-0.4
3,626,343	-				+1.1
3,626,343	-				-0.3
3,626,343	-				-1.3
3,626,343	-				-0.2
3,626,343	-				-0.8
3,626,343	-				+0.9
3,626,343	-				-0.8
3,626,343	-				+0.7
3,626,343	-				+0.7
3,626,343	-				+0.4
3,626,343	-				+0.5
3,626,343	-				-0.1
3,626,343	-				-0.9
3,626,343	-				-1.0
3,626,343	-				-0.4
3,626,345	+				+1.6
3,626,353	-				+0.0
3,626,362	+				+0.2
3,626,364	+				-1.4
3,626,364	+				-0.4
3,626,364	+				-0.6
3,626,364	+				-0.7
3,626,364	+				+0.8
3,626,364	-				+0.6
3,626,364	-				-0.7
3,626,364	-				-1.5
3,626,367	+				-0.3
3,626,372	+				-0.0
3,626,372	+				-0.4
3,626,372	+				-0.5
3,626,372	-				+0.5
3,626,372	-				-1.0
3,626,372	-				+0.1
3,626,377	-				+0.4
3,626,380	+				-0.5
3,626,380	-				-1.1
3,626,380	-				+1.6
3,626,387	+				-0.5
3,626,400	+				-2.4
3,626,400	+				-0.2
3,626,400	+				-0.7
3,626,408	-				-0.4
3,626,413	+				-0.5
3,626,418	-				+0.1
3,626,421	-				+0.2
3,626,421	-				+0.6
3,626,421	-				+0.5
3,626,423	+				-0.5
3,626,436	-				-0.7
3,626,459	-				+0.8
3,626,475	-		GFF3579	0.22	+1.4
3,626,478	+		GFF3579	0.25	-0.9
3,626,484	+		GFF3579	0.30	-1.0
3,626,493	+		GFF3579	0.38	+0.6
3,626,496	+		GFF3579	0.40	-0.7
3,626,503	+		GFF3579	0.46	-0.5
3,626,511	-		GFF3579	0.53	-0.8
3,626,560	-				-0.1
3,626,574	+				+0.3
3,626,598	+				-0.4
3,626,616	-				-1.5
3,626,619	+				+0.3
3,626,627	+				-0.7
3,626,627	-				+0.6
3,626,629	+				+1.2
3,626,629	+				-0.8
3,626,637	-				+1.6
3,626,637	-				-0.9
3,626,645	-				-1.5
3,626,646	+				+0.3
3,626,651	+				+0.7
3,626,651	+				+0.5
3,626,651	+				-0.3
3,626,654	-				-0.3
3,626,666	+				-0.3
3,626,669	-				-0.5
3,626,669	-				+0.2
3,626,677	-				+0.7
3,626,691	+				-0.3
3,626,693	+				-0.2
3,626,693	+				-1.0
3,626,693	+				-0.3
3,626,699	-				+1.4
3,626,699	-				-0.7
3,626,705	+				+1.7
3,626,705	+				+0.5
3,626,705	+				-0.5
3,626,705	+				-0.4
3,626,713	-				-0.2
3,626,713	-				+1.2
3,626,713	-				+0.6
3,626,713	-				+0.4
3,626,723	-				-1.3
3,626,733	+				-1.2
3,626,733	+				-0.3
3,626,739	+				+0.9
3,626,739	+				-0.9
3,626,740	-				-0.1
3,626,741	-				-0.7
3,626,741	-				-0.1
3,626,741	-				+0.5
3,626,747	-				-0.4
3,626,748	-				-0.3
3,626,748	-				-0.1
3,626,748	-				+1.0
3,626,748	-				+1.2
3,626,753	-				+0.7
3,626,759	+				-1.4
3,626,760	+				+1.3
3,626,787	+				-0.9
3,626,816	+				-1.7
3,626,821	+				+0.5
3,626,824	-				-1.4
3,626,940	+				+0.7
3,626,940	-				+1.2
3,626,965	-				+1.1
3,626,994	-				-0.1
3,627,056	-		GFF3580	0.12	+0.2
3,627,100	+		GFF3580	0.17	-0.5
3,627,108	-		GFF3580	0.18	-0.5
3,627,109	-		GFF3580	0.18	-0.0
3,627,149	-		GFF3580	0.23	-0.9
3,627,179	-		GFF3580	0.27	+0.5
3,627,181	+		GFF3580	0.27	+1.4
3,627,181	+		GFF3580	0.27	-0.5
3,627,181	-		GFF3580	0.27	+0.4
3,627,184	+		GFF3580	0.27	-0.4
3,627,186	+		GFF3580	0.27	-0.7
3,627,189	-		GFF3580	0.28	-0.4
3,627,189	-		GFF3580	0.28	-0.8
3,627,192	+		GFF3580	0.28	-0.6
3,627,192	-		GFF3580	0.28	+0.1
3,627,192	-		GFF3580	0.28	-2.0
3,627,194	-		GFF3580	0.28	-0.0
3,627,200	-		GFF3580	0.29	+0.4
3,627,200	-		GFF3580	0.29	+0.1
3,627,204	+		GFF3580	0.30	-0.3
3,627,212	-		GFF3580	0.31	-1.4
3,627,234	-		GFF3580	0.33	-1.5
3,627,253	-		GFF3580	0.36	+0.3
3,627,320	+		GFF3580	0.44	+1.1
3,627,321	-		GFF3580	0.44	-0.4
3,627,322	-		GFF3580	0.44	-0.0
3,627,338	-		GFF3580	0.46	-0.6
3,627,415	+		GFF3580	0.55	+0.3
3,627,416	-		GFF3580	0.55	-1.3
3,627,445	-		GFF3580	0.59	-0.3
3,627,455	-		GFF3580	0.60	+0.1
3,627,459	+		GFF3580	0.60	-1.3
3,627,481	-		GFF3580	0.63	-0.4
3,627,484	-		GFF3580	0.63	-0.5
3,627,484	-		GFF3580	0.63	-0.0
3,627,486	-		GFF3580	0.64	-0.7
3,627,509	+		GFF3580	0.66	-0.9
3,627,509	-		GFF3580	0.66	-1.4
3,627,534	-		GFF3580	0.69	-1.9
3,627,544	-		GFF3580	0.71	-1.2
3,627,546	+		GFF3580	0.71	-0.3
3,627,546	+		GFF3580	0.71	-0.6
3,627,553	-		GFF3580	0.72	+0.6
3,627,554	-		GFF3580	0.72	-0.9
3,627,564	-		GFF3580	0.73	+0.4