Strain Fitness in Sphingobium sp. HT1-2 around GFF3567

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,608,608	+		GFF3565	0.77	-1.0
3,608,616	-		GFF3565	0.77	+1.0
3,608,634	+		GFF3565	0.79	+0.7
3,608,634	+		GFF3565	0.79	+0.4
3,608,634	+		GFF3565	0.79	-0.4
3,608,634	+		GFF3565	0.79	+0.6
3,608,634	+		GFF3565	0.79	-1.6
3,608,639	+		GFF3565	0.80	-0.5
3,608,639	+		GFF3565	0.80	-0.0
3,608,639	+		GFF3565	0.80	+0.1
3,608,639	+		GFF3565	0.80	+0.6
3,608,639	+		GFF3565	0.80	+0.7
3,608,639	+		GFF3565	0.80	+0.3
3,608,642	-		GFF3565	0.80	-0.7
3,608,642	-		GFF3565	0.80	+1.3
3,608,647	+		GFF3565	0.81	-2.0
3,608,647	-		GFF3565	0.81	+1.1
3,608,647	-		GFF3565	0.81	+1.5
3,608,647	-		GFF3565	0.81	-1.1
3,608,647	-		GFF3565	0.81	-0.1
3,608,647	-		GFF3565	0.81	+0.4
3,608,647	-		GFF3565	0.81	-0.3
3,608,647	-		GFF3565	0.81	-0.4
3,608,647	-		GFF3565	0.81	+0.3
3,608,647	-		GFF3565	0.81	+0.1
3,608,668	-		GFF3565	0.83	-0.3
3,608,673	-		GFF3565	0.84	+1.2
3,608,686	+		GFF3565	0.85	+0.3
3,608,687	-		GFF3565	0.85	-0.1
3,608,693	+		GFF3565	0.86	+0.3
3,608,698	+		GFF3565	0.87	-1.3
3,608,698	+		GFF3565	0.87	-0.9
3,608,703	-		GFF3565	0.87	+0.4
3,608,715	-		GFF3565	0.88	-0.6
3,608,719	-		GFF3565	0.89	-0.3
3,608,753	-				-1.2
3,608,761	+				-0.4
3,608,762	+				+0.0
3,608,796	+				-1.1
3,608,813	+				+2.2
3,608,820	+				-0.4
3,608,826	+				-1.3
3,608,828	+				-0.2
3,608,828	+				+1.2
3,608,828	-				+1.1
3,608,830	-				-0.9
3,608,842	+				-0.2
3,608,850	-				-0.1
3,608,850	-				-1.6
3,608,850	-				+1.3
3,608,850	-				+1.6
3,608,850	-				-1.2
3,608,850	-				+0.3
3,608,862	+				+0.3
3,608,862	+				+0.4
3,608,862	+				-1.2
3,608,870	-				+1.0
3,608,870	-				-0.5
3,608,870	-				-0.6
3,608,870	-				-0.2
3,608,870	-				+1.1
3,608,875	+				-0.8
3,608,875	+				+0.2
3,608,875	+				-0.6
3,608,875	+				-0.0
3,608,875	+				+0.9
3,608,883	-				-0.7
3,608,883	-				-1.9
3,608,883	-				+1.5
3,608,883	-				+0.7
3,608,923	+				-0.6
3,608,932	-				+0.4
3,608,934	+				+0.6
3,608,942	-				-0.7
3,608,964	-				+0.5
3,609,007	-		GFF3566	0.14	+0.4
3,609,020	+		GFF3566	0.17	+0.4
3,609,021	+		GFF3566	0.17	+0.7
3,609,021	+		GFF3566	0.17	-0.1
3,609,029	-		GFF3566	0.19	-1.2
3,609,029	-		GFF3566	0.19	-0.2
3,609,045	+		GFF3566	0.22	-0.4
3,609,048	-		GFF3566	0.23	-1.1
3,609,050	+		GFF3566	0.23	-0.8
3,609,053	-		GFF3566	0.24	-1.9
3,609,053	-		GFF3566	0.24	-0.5
3,609,055	+		GFF3566	0.25	+0.8
3,609,055	+		GFF3566	0.25	+0.5
3,609,055	+		GFF3566	0.25	+2.4
3,609,055	+		GFF3566	0.25	-0.1
3,609,055	+		GFF3566	0.25	+0.4
3,609,055	+		GFF3566	0.25	-0.6
3,609,055	+		GFF3566	0.25	-1.0
3,609,055	+		GFF3566	0.25	+0.4
3,609,055	+		GFF3566	0.25	-0.5
3,609,055	+		GFF3566	0.25	-0.2
3,609,055	+		GFF3566	0.25	+1.2
3,609,055	+		GFF3566	0.25	-1.5
3,609,055	+		GFF3566	0.25	-1.0
3,609,055	+		GFF3566	0.25	-0.5
3,609,055	+		GFF3566	0.25	-0.8
3,609,055	+		GFF3566	0.25	-0.6
3,609,055	+		GFF3566	0.25	+0.7
3,609,055	+		GFF3566	0.25	-0.4
3,609,055	+		GFF3566	0.25	+0.2
3,609,058	-		GFF3566	0.25	-0.7
3,609,060	+		GFF3566	0.26	-0.3
3,609,063	-		GFF3566	0.26	-0.3
3,609,063	-		GFF3566	0.26	-0.4
3,609,063	-		GFF3566	0.26	-2.0
3,609,063	-		GFF3566	0.26	-2.1
3,609,063	-		GFF3566	0.26	-0.3
3,609,063	-		GFF3566	0.26	-1.4
3,609,063	-		GFF3566	0.26	-1.0
3,609,063	-		GFF3566	0.26	+0.4
3,609,065	+		GFF3566	0.27	-0.5
3,609,065	+		GFF3566	0.27	-1.5
3,609,065	+		GFF3566	0.27	-2.0
3,609,065	+		GFF3566	0.27	-0.5
3,609,065	+		GFF3566	0.27	-1.5
3,609,065	+		GFF3566	0.27	-0.5
3,609,068	-		GFF3566	0.27	+0.2
3,609,073	-		GFF3566	0.29	-0.8
3,609,073	-		GFF3566	0.29	+0.0
3,609,073	-		GFF3566	0.29	-0.3
3,609,131	-		GFF3566	0.41	-0.9
3,609,149	+		GFF3566	0.45	+0.3
3,609,149	+		GFF3566	0.45	-0.2
3,609,157	-		GFF3566	0.47	-0.9
3,609,157	-		GFF3566	0.47	-0.8
3,609,178	+		GFF3566	0.52	+0.3
3,609,186	-		GFF3566	0.53	-0.4
3,609,195	+		GFF3566	0.55	+0.8
3,609,203	-		GFF3566	0.57	-0.6
3,609,322	+		GFF3566	0.83	+0.3
3,609,322	+		GFF3566	0.83	-0.5
3,609,330	-		GFF3566	0.85	+0.2
3,609,330	-		GFF3566	0.85	-2.5
3,609,343	+		GFF3566	0.88	+0.3
3,609,343	+		GFF3566	0.88	-0.5
3,609,409	+				-0.4
3,609,412	-				-1.1
3,609,415	+				-1.1
3,609,417	-				+1.7
3,609,417	-				+2.0
3,609,422	+				+0.5
3,609,422	+				+0.8
3,609,439	+				-0.5
3,609,447	-				-0.3
3,609,447	-				-0.6
3,609,450	-				+0.3
3,609,510	+				-0.4
3,609,510	+				-0.7
3,609,515	+				-0.4
3,609,522	+				-0.8
3,609,525	-				-0.1
3,609,525	-				-0.3
3,609,530	-				-1.3
3,609,531	+				-1.0
3,609,539	-				+0.2
3,609,539	-				-0.6
3,609,558	-				-0.1
3,609,567	-				-0.4
3,609,569	-				+1.2
3,609,575	-				+0.2
3,609,576	+				+2.0
3,609,577	+				-0.4
3,609,577	-				-0.1
3,609,577	-				-0.8
3,609,577	-				+0.1
3,609,585	-				+0.7
3,609,591	+				-1.1
3,609,591	-				+0.4
3,609,628	+		GFF3567	0.17	-1.3
3,609,628	+		GFF3567	0.17	+1.0
3,609,628	-		GFF3567	0.17	-0.3
3,609,629	+		GFF3567	0.18	-1.1
3,609,629	+		GFF3567	0.18	-1.1
3,609,629	+		GFF3567	0.18	-1.3
3,609,629	+		GFF3567	0.18	-0.3
3,609,637	-		GFF3567	0.24	-1.2
3,609,637	-		GFF3567	0.24	-0.3
3,609,637	-		GFF3567	0.24	-0.5
3,609,649	+		GFF3567	0.33	+0.4
3,609,657	-		GFF3567	0.39	-1.7
3,609,675	+		GFF3567	0.53	+0.4
3,609,688	-		GFF3567	0.63	-1.3
3,609,705	-		GFF3567	0.76	-0.4
3,609,707	+		GFF3567	0.77	-0.4
3,609,707	+		GFF3567	0.77	-0.1
3,609,707	+		GFF3567	0.77	-0.5
3,609,707	-		GFF3567	0.77	-0.5
3,609,712	+		GFF3567	0.81	-1.6
3,609,720	-		GFF3567	0.87	+0.1
3,609,727	+				+1.6
3,609,728	-				-0.3
3,609,736	-				-0.3
3,609,750	-				-0.6
3,609,757	+				-1.2
3,609,770	+				+1.1
3,609,783	-				-1.7
3,609,840	-				+1.1
3,609,840	-				-1.3
3,609,840	-				-0.5
3,609,840	-				-1.6
3,609,840	-				-1.6
3,609,866	-				-0.5
3,609,891	+				+0.7
3,609,894	-				+1.3
3,609,894	-				+0.4
3,609,894	-				-0.4
3,609,899	-				-0.8
3,609,899	-				-1.5
3,609,908	+				+0.4
3,609,920	+				+0.6
3,609,920	+				-0.0
3,609,920	+				+0.7
3,609,920	+				-1.7
3,609,920	+				-0.5
3,609,923	-				+0.8
3,609,928	-				+0.2
3,609,928	-				-1.0
3,609,928	-				+1.1
3,609,928	-				+0.7
3,609,928	-				-0.1
3,609,928	-				-1.3
3,609,929	+				+0.7
3,609,929	+				+0.7
3,609,929	+				-1.1
3,609,929	+				-0.7
3,609,933	-				+0.5
3,609,937	-				-0.6
3,609,937	-				-0.2
3,609,937	-				-1.5
3,609,937	-				+0.1
3,609,937	-				+2.1
3,609,937	-				+0.2
3,609,937	-				+0.3
3,609,944	+				+0.6
3,609,944	+				-0.9
3,609,952	-				-1.9
3,609,952	-				-0.4
3,609,955	+				-1.3
3,609,955	+				-0.4
3,609,963	-				+0.5
3,609,963	-				+0.2
3,609,963	-				+0.7
3,609,974	+				+1.2
3,609,982	+				+1.3
3,609,982	-				-0.2
3,609,982	-				-0.5
3,609,982	-				-0.3
3,609,982	-				+0.2
3,609,982	-				-0.7
3,609,994	+				+0.8
3,610,002	-				-0.2
3,610,049	-				+0.9
3,610,051	+				+1.1
3,610,051	+				-0.6
3,610,051	+				-0.9
3,610,054	+				+1.3
3,610,059	-				-1.8
3,610,061	+				+0.9
3,610,070	-				-0.1
3,610,074	-				-0.7
3,610,078	+				-0.1
3,610,078	+				-0.5
3,610,083	+				-0.6
3,610,086	+				+0.2
3,610,086	+				-0.3
3,610,094	-				-1.1
3,610,094	-				-1.1
3,610,094	-				-0.3
3,610,094	-				-0.5
3,610,094	-				+1.8
3,610,094	-				+0.3
3,610,096	+				-0.4
3,610,096	+				+1.3
3,610,096	+				-0.6
3,610,096	+				+1.9
3,610,096	+				-1.1
3,610,098	+				-1.6
3,610,098	+				-0.8
3,610,098	+				-1.3
3,610,098	+				-1.4
3,610,098	+				+0.0
3,610,098	+				-0.4
3,610,098	+				-0.3
3,610,098	-				+1.3
3,610,104	-				+1.1
3,610,104	-				-0.9
3,610,104	-				-0.7
3,610,104	-				-1.5
3,610,104	-				-0.5
3,610,104	-				+0.0
3,610,106	-				+0.2
3,610,106	-				-1.1
3,610,106	-				-0.9
3,610,108	+				+1.9
3,610,123	+				-0.2
3,610,123	+				+0.3
3,610,131	-				+0.0
3,610,131	-				-0.4
3,610,136	-				-0.7
3,610,141	+				-1.1
3,610,141	+				-1.2
3,610,149	-				+0.8
3,610,149	-				-0.4
3,610,162	+		GFF3568	0.10	-0.3
3,610,202	+		GFF3568	0.11	+0.5
3,610,206	+		GFF3568	0.11	-1.9
3,610,210	-		GFF3568	0.11	+1.1
3,610,214	-		GFF3568	0.11	+0.5
3,610,214	-		GFF3568	0.11	-0.1
3,610,214	-		GFF3568	0.11	+1.3
3,610,231	+		GFF3568	0.12	-0.6
3,610,239	-		GFF3568	0.12	-0.6
3,610,245	+		GFF3568	0.12	-0.6
3,610,248	-		GFF3568	0.12	+0.5
3,610,258	-		GFF3568	0.13	-0.8
3,610,258	-		GFF3568	0.13	-1.2
3,610,288	+		GFF3568	0.13	-1.3
3,610,289	+		GFF3568	0.13	-0.4
3,610,292	-		GFF3568	0.13	-0.7
3,610,297	+		GFF3568	0.14	+1.5
3,610,297	-		GFF3568	0.14	+0.7
3,610,318	-		GFF3568	0.14	-0.1
3,610,345	+		GFF3568	0.15	+0.3
3,610,345	+		GFF3568	0.15	-1.1
3,610,346	+		GFF3568	0.15	+1.6
3,610,353	+		GFF3568	0.15	+0.2
3,610,353	-		GFF3568	0.15	+0.3
3,610,359	-		GFF3568	0.15	-0.1
3,610,359	-		GFF3568	0.15	+1.3
3,610,367	+		GFF3568	0.15	+0.4
3,610,374	-		GFF3568	0.16	-1.0
3,610,374	-		GFF3568	0.16	+1.7
3,610,374	-		GFF3568	0.16	+0.6
3,610,374	-		GFF3568	0.16	-0.2
3,610,392	-		GFF3568	0.16	+0.3
3,610,392	-		GFF3568	0.16	-0.8
3,610,392	-		GFF3568	0.16	+1.2
3,610,398	+		GFF3568	0.16	+0.2
3,610,406	-		GFF3568	0.16	-0.8
3,610,415	-		GFF3568	0.17	-0.5
3,610,416	-		GFF3568	0.17	-1.0
3,610,459	-		GFF3568	0.18	-0.8
3,610,558	-		GFF3568	0.20	-0.3
3,610,564	-		GFF3568	0.21	+1.2
3,610,564	-		GFF3568	0.21	+0.0
3,610,572	-		GFF3568	0.21	-0.5
3,610,577	-		GFF3568	0.21	+1.9
3,610,630	+		GFF3568	0.22	+1.0
3,610,630	+		GFF3568	0.22	-1.9
3,610,630	+		GFF3568	0.22	-0.2
3,610,640	+		GFF3568	0.23	-1.0
3,610,640	+		GFF3568	0.23	+1.7
3,610,640	+		GFF3568	0.23	-1.4
3,610,640	+		GFF3568	0.23	+0.0
3,610,645	+		GFF3568	0.23	-1.1
3,610,645	+		GFF3568	0.23	-1.0
3,610,645	+		GFF3568	0.23	+1.3
3,610,648	-		GFF3568	0.23	-1.1
3,610,648	-		GFF3568	0.23	-1.7
3,610,648	-		GFF3568	0.23	-1.3
3,610,648	-		GFF3568	0.23	-0.4
3,610,648	-		GFF3568	0.23	-0.4
3,610,648	-		GFF3568	0.23	+0.2
3,610,648	-		GFF3568	0.23	+0.7
3,610,653	-		GFF3568	0.23	+0.2
3,610,653	-		GFF3568	0.23	-1.1
3,610,653	-		GFF3568	0.23	-0.1
3,610,657	+		GFF3568	0.23	-0.8
3,610,657	+		GFF3568	0.23	+0.6
3,610,661	-		GFF3568	0.23	-0.0
3,610,664	+		GFF3568	0.23	+0.4
3,610,666	+		GFF3568	0.23	-1.0
3,610,666	+		GFF3568	0.23	+1.7
3,610,666	+		GFF3568	0.23	-1.4
3,610,666	+		GFF3568	0.23	-0.4
3,610,666	+		GFF3568	0.23	-0.8
3,610,666	+		GFF3568	0.23	-0.4
3,610,666	+		GFF3568	0.23	+0.4
3,610,666	+		GFF3568	0.23	-2.0
3,610,667	-		GFF3568	0.23	-0.7
3,610,673	+		GFF3568	0.23	+0.5
3,610,674	-		GFF3568	0.23	+0.5
3,610,674	-		GFF3568	0.23	-1.1
3,610,676	+		GFF3568	0.23	-2.0
3,610,676	+		GFF3568	0.23	+0.7
3,610,676	+		GFF3568	0.23	-0.8
3,610,676	+		GFF3568	0.23	+0.3
3,610,676	+		GFF3568	0.23	-0.4
3,610,678	+		GFF3568	0.24	-0.4
3,610,678	+		GFF3568	0.24	-0.9
3,610,684	-		GFF3568	0.24	+0.1
3,610,684	-		GFF3568	0.24	-0.0
3,610,684	-		GFF3568	0.24	+0.5
3,610,686	+		GFF3568	0.24	+0.5
3,610,686	-		GFF3568	0.24	-0.4
3,610,686	-		GFF3568	0.24	-2.0
3,610,686	-		GFF3568	0.24	-0.3
3,610,689	-		GFF3568	0.24	-0.7
3,610,694	-		GFF3568	0.24	-1.6
3,610,694	-		GFF3568	0.24	+1.3
3,610,694	-		GFF3568	0.24	+0.3
3,610,697	+		GFF3568	0.24	-0.6
3,610,709	-		GFF3568	0.24	-1.0
3,610,716	-		GFF3568	0.24	+0.6
3,610,718	+		GFF3568	0.25	-1.3
3,610,728	-		GFF3568	0.25	-0.5