Strain Fitness in Sphingobium sp. HT1-2 around GFF3467

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,508,022	-		GFF3466	0.20	-1.5
3,508,043	-		GFF3466	0.22	+0.5
3,508,081	+		GFF3466	0.25	-0.6
3,508,081	+		GFF3466	0.25	-0.0
3,508,089	-		GFF3466	0.26	-1.5
3,508,095	+		GFF3466	0.27	+0.2
3,508,096	-		GFF3466	0.27	-1.5
3,508,103	-		GFF3466	0.27	-1.5
3,508,103	-		GFF3466	0.27	-0.5
3,508,103	-		GFF3466	0.27	+0.1
3,508,123	+		GFF3466	0.29	+0.7
3,508,125	-		GFF3466	0.30	+1.2
3,508,125	-		GFF3466	0.30	-0.7
3,508,190	-		GFF3466	0.36	+0.1
3,508,194	+		GFF3466	0.36	+0.1
3,508,224	+		GFF3466	0.39	-1.8
3,508,224	+		GFF3466	0.39	+1.9
3,508,234	+		GFF3466	0.40	-0.3
3,508,241	+		GFF3466	0.41	+0.5
3,508,253	+		GFF3466	0.42	-1.1
3,508,261	-		GFF3466	0.42	+0.9
3,508,287	-		GFF3466	0.45	-1.9
3,508,292	-		GFF3466	0.45	-0.7
3,508,307	+		GFF3466	0.47	-2.2
3,508,320	-		GFF3466	0.48	-1.6
3,508,329	+		GFF3466	0.49	-0.8
3,508,334	+		GFF3466	0.49	-0.5
3,508,334	+		GFF3466	0.49	-2.0
3,508,334	+		GFF3466	0.49	-0.9
3,508,337	-		GFF3466	0.50	+0.1
3,508,342	-		GFF3466	0.50	-0.7
3,508,342	-		GFF3466	0.50	+0.7
3,508,347	+		GFF3466	0.51	-1.5
3,508,369	+		GFF3466	0.53	-0.5
3,508,375	+		GFF3466	0.53	+1.4
3,508,386	+		GFF3466	0.54	-1.7
3,508,395	+		GFF3466	0.55	+0.4
3,508,399	-		GFF3466	0.56	-2.4
3,508,425	-		GFF3466	0.58	-1.2
3,508,431	-		GFF3466	0.59	+0.3
3,508,457	+		GFF3466	0.61	-0.0
3,508,465	-		GFF3466	0.62	+0.6
3,508,465	-		GFF3466	0.62	+0.9
3,508,498	+		GFF3466	0.65	+0.1
3,508,504	-		GFF3466	0.66	-0.3
3,508,504	-		GFF3466	0.66	-1.2
3,508,504	-		GFF3466	0.66	-1.5
3,508,506	+		GFF3466	0.66	-0.1
3,508,514	-		GFF3466	0.66	-1.1
3,508,515	-		GFF3466	0.67	-1.5
3,508,537	+		GFF3466	0.69	+0.1
3,508,537	+		GFF3466	0.69	-0.3
3,508,537	+		GFF3466	0.69	-0.0
3,508,539	+		GFF3466	0.69	+1.2
3,508,567	-		GFF3466	0.72	-0.4
3,508,575	+		GFF3466	0.72	-0.3
3,508,575	+		GFF3466	0.72	-1.2
3,508,575	-		GFF3466	0.72	-1.4
3,508,581	-		GFF3466	0.73	-1.3
3,508,582	+		GFF3466	0.73	-1.3
3,508,593	-		GFF3466	0.74	-0.3
3,508,593	-		GFF3466	0.74	-0.6
3,508,593	-		GFF3466	0.74	-0.1
3,508,596	+		GFF3466	0.74	+0.2
3,508,598	+		GFF3466	0.74	+1.6
3,508,604	+		GFF3466	0.75	+0.0
3,508,628	+		GFF3466	0.77	-0.8
3,508,632	+		GFF3466	0.78	-1.2
3,508,636	-		GFF3466	0.78	+0.2
3,508,638	+		GFF3466	0.78	-0.5
3,508,640	-		GFF3466	0.78	-0.2
3,508,651	-		GFF3466	0.79	-1.0
3,508,672	+		GFF3466	0.81	+0.3
3,508,687	-		GFF3466	0.83	-0.7
3,508,697	+		GFF3466	0.84	+0.5
3,508,703	-		GFF3466	0.84	-0.3
3,508,736	+		GFF3466	0.88	+0.2
3,508,741	+		GFF3466	0.88	+0.7
3,508,741	+		GFF3466	0.88	-0.9
3,508,741	+		GFF3466	0.88	+0.5
3,508,741	+		GFF3466	0.88	-0.3
3,508,741	+		GFF3466	0.88	-0.5
3,508,744	-		GFF3466	0.88	-1.2
3,508,749	-		GFF3466	0.89	-0.9
3,508,749	-		GFF3466	0.89	-0.9
3,508,749	-		GFF3466	0.89	+0.2
3,508,749	-		GFF3466	0.89	+0.2
3,508,749	-		GFF3466	0.89	-1.2
3,508,759	+		GFF3466	0.90	-0.0
3,508,761	+				-0.6
3,508,761	+				-0.8
3,508,784	+				-1.7
3,508,795	+				-0.1
3,508,796	+				-1.6
3,508,804	-				-0.2
3,508,810	+				-1.2
3,508,914	+				+0.1
3,508,942	+				-1.3
3,508,950	+				-1.1
3,508,985	+				-2.0
3,508,993	-				+2.0
3,509,005	+				-1.1
3,509,005	+				-0.1
3,509,031	+				-0.2
3,509,056	+				-1.1
3,509,084	+				-0.3
3,509,084	+				-1.6
3,509,095	+				+0.8
3,509,095	+				-0.2
3,509,097	-				-0.9
3,509,110	+		GFF3467	0.11	-0.3
3,509,145	+		GFF3467	0.15	-1.8
3,509,145	+		GFF3467	0.15	+0.9
3,509,145	+		GFF3467	0.15	-0.1
3,509,145	+		GFF3467	0.15	-0.8
3,509,145	+		GFF3467	0.15	-0.9
3,509,145	+		GFF3467	0.15	-0.8
3,509,145	+		GFF3467	0.15	+0.4
3,509,145	+		GFF3467	0.15	-0.2
3,509,145	+		GFF3467	0.15	-1.2
3,509,145	+		GFF3467	0.15	+0.9
3,509,145	+		GFF3467	0.15	+0.7
3,509,145	+		GFF3467	0.15	+0.1
3,509,145	+		GFF3467	0.15	-0.4
3,509,150	+		GFF3467	0.16	+0.6
3,509,150	+		GFF3467	0.16	-0.5
3,509,150	+		GFF3467	0.16	+0.4
3,509,150	+		GFF3467	0.16	+0.3
3,509,150	+		GFF3467	0.16	-1.4
3,509,150	+		GFF3467	0.16	-0.5
3,509,150	+		GFF3467	0.16	+0.9
3,509,153	-		GFF3467	0.16	-2.1
3,509,153	-		GFF3467	0.16	+0.5
3,509,153	-		GFF3467	0.16	+0.0
3,509,153	-		GFF3467	0.16	+0.2
3,509,153	-		GFF3467	0.16	+0.2
3,509,153	-		GFF3467	0.16	-0.2
3,509,153	-		GFF3467	0.16	-1.3
3,509,153	-		GFF3467	0.16	-0.4
3,509,155	+		GFF3467	0.16	+0.2
3,509,158	-		GFF3467	0.16	-1.3
3,509,158	-		GFF3467	0.16	+0.5
3,509,158	-		GFF3467	0.16	-1.1
3,509,164	+		GFF3467	0.17	+0.0
3,509,164	+		GFF3467	0.17	+0.1
3,509,175	+		GFF3467	0.18	-0.8
3,509,179	-		GFF3467	0.19	-1.5
3,509,183	-		GFF3467	0.19	-0.6
3,509,186	+		GFF3467	0.19	-1.4
3,509,187	-		GFF3467	0.20	+0.2
3,509,194	-		GFF3467	0.20	-0.6
3,509,198	+		GFF3467	0.21	-1.2
3,509,198	+		GFF3467	0.21	-0.3
3,509,206	-		GFF3467	0.22	-1.4
3,509,206	-		GFF3467	0.22	-1.3
3,509,206	-		GFF3467	0.22	+0.7
3,509,206	-		GFF3467	0.22	-0.5
3,509,206	-		GFF3467	0.22	-1.7
3,509,206	-		GFF3467	0.22	-1.3
3,509,250	+		GFF3467	0.26	+0.7
3,509,253	-		GFF3467	0.27	+0.2
3,509,255	+		GFF3467	0.27	-0.8
3,509,255	+		GFF3467	0.27	+0.0
3,509,273	-		GFF3467	0.29	+0.5
3,509,289	+		GFF3467	0.31	-0.5
3,509,289	+		GFF3467	0.31	+0.2
3,509,302	-		GFF3467	0.32	-0.8
3,509,302	-		GFF3467	0.32	+0.5
3,509,381	+		GFF3467	0.41	-0.1
3,509,394	-		GFF3467	0.42	-0.6
3,509,395	-		GFF3467	0.42	+0.4
3,509,407	+		GFF3467	0.44	+0.9
3,509,407	+		GFF3467	0.44	-1.5
3,509,422	-		GFF3467	0.45	+0.7
3,509,484	-		GFF3467	0.52	+1.3
3,509,485	-		GFF3467	0.52	-1.2
3,509,506	-		GFF3467	0.54	+0.1
3,509,506	-		GFF3467	0.54	-0.9
3,509,506	-		GFF3467	0.54	+0.2
3,509,511	-		GFF3467	0.55	+0.4
3,509,516	-		GFF3467	0.56	-0.9
3,509,537	-		GFF3467	0.58	+1.5
3,509,537	-		GFF3467	0.58	+0.3
3,509,559	-		GFF3467	0.60	-0.2
3,509,561	+		GFF3467	0.60	-0.1
3,509,561	+		GFF3467	0.60	-0.1
3,509,561	+		GFF3467	0.60	-1.0
3,509,569	+		GFF3467	0.61	-0.1
3,509,569	-		GFF3467	0.61	-1.6
3,509,569	-		GFF3467	0.61	-1.1
3,509,612	+		GFF3467	0.66	-0.9
3,509,620	-		GFF3467	0.67	+0.3
3,509,630	-		GFF3467	0.68	-0.1
3,509,636	+		GFF3467	0.69	-1.9
3,509,636	+		GFF3467	0.69	-0.9
3,509,644	-		GFF3467	0.70	+0.4
3,509,646	+		GFF3467	0.70	-0.6
3,509,659	+		GFF3467	0.71	-0.8
3,509,664	+		GFF3467	0.72	+0.4
3,509,666	-		GFF3467	0.72	+0.1
3,509,695	+		GFF3467	0.75	+0.1
3,509,695	+		GFF3467	0.75	-0.6
3,509,695	+		GFF3467	0.75	-0.4
3,509,695	+		GFF3467	0.75	+1.9
3,509,695	+		GFF3467	0.75	-0.3
3,509,695	+		GFF3467	0.75	-2.1
3,509,695	+		GFF3467	0.75	-1.1
3,509,703	-		GFF3467	0.76	-1.3
3,509,703	-		GFF3467	0.76	+0.4
3,509,723	+		GFF3467	0.78	-0.8
3,509,736	-		GFF3467	0.80	-1.0
3,509,743	+		GFF3467	0.80	-2.5
3,509,743	+		GFF3467	0.80	-0.8
3,509,743	+		GFF3467	0.80	-0.9
3,509,748	+		GFF3467	0.81	-0.8
3,509,753	+		GFF3467	0.81	-0.8
3,509,753	+		GFF3467	0.81	+1.0
3,509,753	+		GFF3467	0.81	-1.1
3,509,761	-		GFF3467	0.82	-0.8
3,509,761	-		GFF3467	0.82	+0.2
3,509,766	-		GFF3467	0.83	+0.7
3,509,767	-		GFF3467	0.83	-0.9
3,509,841	+				+1.0
3,509,844	-				-1.0
3,509,848	+				-0.2
3,509,848	+				-1.9
3,509,848	+				-0.2
3,509,853	+				+1.8
3,509,853	+				-0.9
3,509,853	+				-1.4
3,509,856	-				-0.6
3,509,856	-				-1.4
3,509,861	-				-1.7
3,509,861	-				-0.6
3,509,861	-				-0.3
3,509,861	-				+1.7
3,509,861	-				-0.7
3,509,861	-				+0.7
3,509,861	-				+0.3
3,509,866	+				+0.7
3,509,872	+				+1.2
3,509,873	+				-0.7
3,509,873	+				+0.0
3,509,878	+				+0.5
3,509,878	+				-0.9
3,509,878	+				-0.5
3,509,878	+				-1.1
3,509,881	-				-2.3
3,509,886	-				-0.1
3,509,886	-				-1.3
3,509,886	-				-0.7
3,509,886	-				+0.3
3,509,888	+				-1.2
3,509,896	-				-0.2
3,509,896	-				-2.1
3,509,899	+				-0.1
3,509,907	-				+0.1
3,509,931	-				-1.3
3,509,939	-				-1.7
3,509,947	-				+0.5
3,509,954	+				+0.2
3,509,979	+				-0.1
3,509,996	+				-1.1
3,509,996	+				-1.0
3,509,996	-				+1.3
3,509,997	-				-1.6
3,510,004	-				+0.5
3,510,028	+				-0.1
3,510,076	-		GFF3468	0.16	+1.4
3,510,076	-		GFF3468	0.16	-1.1
3,510,081	+		GFF3468	0.17	+1.1
3,510,081	+		GFF3468	0.17	-0.8
3,510,089	-		GFF3468	0.18	-1.5
3,510,115	+		GFF3468	0.23	+0.8
3,510,137	+		GFF3468	0.27	-0.5
3,510,138	-		GFF3468	0.28	-0.8
3,510,146	+		GFF3468	0.29	-1.6
3,510,163	+		GFF3468	0.32	-0.6
3,510,163	+		GFF3468	0.32	-0.6
3,510,163	+		GFF3468	0.32	+0.6
3,510,168	+		GFF3468	0.33	-0.6
3,510,171	-		GFF3468	0.34	+0.3
3,510,171	-		GFF3468	0.34	+0.1
3,510,171	-		GFF3468	0.34	+0.5
3,510,171	-		GFF3468	0.34	+0.3
3,510,171	-		GFF3468	0.34	-1.7
3,510,171	-		GFF3468	0.34	-0.5
3,510,176	-		GFF3468	0.35	+0.5
3,510,203	+		GFF3468	0.40	-0.6
3,510,211	-		GFF3468	0.42	-1.8
3,510,211	-		GFF3468	0.42	+1.9
3,510,212	+		GFF3468	0.42	-0.3
3,510,238	-		GFF3468	0.47	+0.3
3,510,244	+		GFF3468	0.48	-1.1
3,510,247	-		GFF3468	0.48	+0.7
3,510,252	-		GFF3468	0.49	-1.5
3,510,252	-		GFF3468	0.49	+0.3
3,510,252	-		GFF3468	0.49	+0.0
3,510,252	-		GFF3468	0.49	-0.7
3,510,280	+		GFF3468	0.55	-1.1
3,510,280	+		GFF3468	0.55	+0.1
3,510,282	-		GFF3468	0.55	-0.5
3,510,282	-		GFF3468	0.55	+0.0
3,510,288	-		GFF3468	0.56	-2.8
3,510,290	+		GFF3468	0.57	-0.7
3,510,290	-		GFF3468	0.57	-2.1
3,510,313	+		GFF3468	0.61	-1.7
3,510,321	-		GFF3468	0.62	-0.3
3,510,321	-		GFF3468	0.62	-2.1
3,510,344	-		GFF3468	0.67	-0.8
3,510,359	+		GFF3468	0.70	+1.0
3,510,365	+		GFF3468	0.71	-1.3
3,510,366	+		GFF3468	0.71	+0.7
3,510,367	-		GFF3468	0.71	+0.7
3,510,373	-		GFF3468	0.72	+0.5
3,510,383	+		GFF3468	0.74	-0.6
3,510,390	+		GFF3468	0.76	-2.3
3,510,390	+		GFF3468	0.76	-1.2
3,510,393	-		GFF3468	0.76	+1.0
3,510,398	-		GFF3468	0.77	-0.1
3,510,425	+		GFF3468	0.82	-0.8
3,510,428	-		GFF3468	0.83	+1.6
3,510,435	-		GFF3468	0.84	+0.2
3,510,435	-		GFF3468	0.84	-0.3
3,510,450	-		GFF3468	0.87	-0.2
3,510,465	-				+0.4
3,510,468	-				-0.7
3,510,502	+				-2.0
3,510,502	+				-0.1
3,510,512	+				-0.6
3,510,519	-				+1.7
3,510,519	-				-0.1
3,510,547	-				-0.1
3,510,599	-				+2.0
3,510,600	-				+0.2
3,510,619	-				-1.5