Strain Fitness in Sphingobium sp. HT1-2 around GFF3455

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,494,891	-		GFF3454	0.14	-1.5
3,494,891	-		GFF3454	0.14	+0.4
3,494,912	+		GFF3454	0.19	-0.3
3,494,955	-		GFF3454	0.30	+0.6
3,494,959	+		GFF3454	0.31	+0.3
3,494,967	-		GFF3454	0.33	+0.7
3,494,967	-		GFF3454	0.33	+1.3
3,494,978	-		GFF3454	0.36	+0.7
3,494,979	-		GFF3454	0.36	-0.5
3,494,979	-		GFF3454	0.36	-1.5
3,494,979	-		GFF3454	0.36	-0.1
3,495,018	-		GFF3454	0.46	-0.4
3,495,023	-		GFF3454	0.47	-0.7
3,495,056	-		GFF3454	0.55	-0.4
3,495,059	-		GFF3454	0.56	-0.7
3,495,064	-		GFF3454	0.57	+0.0
3,495,071	+		GFF3454	0.59	-1.7
3,495,073	+		GFF3454	0.59	-0.5
3,495,073	+		GFF3454	0.59	-0.4
3,495,079	-		GFF3454	0.61	-0.6
3,495,081	-		GFF3454	0.61	-1.4
3,495,081	-		GFF3454	0.61	-1.8
3,495,114	+		GFF3454	0.70	-0.1
3,495,114	+		GFF3454	0.70	-0.8
3,495,114	+		GFF3454	0.70	-1.0
3,495,122	-		GFF3454	0.72	+0.6
3,495,122	-		GFF3454	0.72	-1.7
3,495,122	-		GFF3454	0.72	+0.9
3,495,125	+		GFF3454	0.72	-0.0
3,495,125	+		GFF3454	0.72	-0.1
3,495,125	+		GFF3454	0.72	+0.1
3,495,125	+		GFF3454	0.72	-0.4
3,495,125	+		GFF3454	0.72	-1.4
3,495,125	+		GFF3454	0.72	-0.2
3,495,133	-		GFF3454	0.74	-0.1
3,495,133	-		GFF3454	0.74	-0.0
3,495,134	-		GFF3454	0.75	-0.6
3,495,145	+		GFF3454	0.77	-0.9
3,495,145	+		GFF3454	0.77	-0.6
3,495,145	+		GFF3454	0.77	-1.2
3,495,157	-		GFF3454	0.80	-1.2
3,495,196	+				+0.9
3,495,204	-				-0.2
3,495,228	-				-1.2
3,495,290	+				-2.7
3,495,294	+				-1.7
3,495,315	+				+0.2
3,495,331	-				-0.5
3,495,331	-				-1.3
3,495,331	-				-1.8
3,495,350	-				-1.1
3,495,353	-				-1.4
3,495,359	-				-1.2
3,495,361	-				-1.6
3,495,401	+		GFF3455	0.11	-1.8
3,495,418	-		GFF3455	0.12	-0.9
3,495,420	+		GFF3455	0.13	-1.7
3,495,457	+		GFF3455	0.16	-1.7
3,495,475	+		GFF3455	0.17	-0.5
3,495,480	+		GFF3455	0.18	-1.8
3,495,483	-		GFF3455	0.18	-1.8
3,495,488	-		GFF3455	0.18	-1.9
3,495,488	-		GFF3455	0.18	-1.9
3,495,494	-		GFF3455	0.19	-1.1
3,495,517	-		GFF3455	0.21	-0.8
3,495,541	+		GFF3455	0.23	+0.0
3,495,550	-		GFF3455	0.23	-2.8
3,495,577	+		GFF3455	0.26	-2.0
3,495,590	-		GFF3455	0.27	-1.1
3,495,600	-		GFF3455	0.28	-3.4
3,495,606	+		GFF3455	0.28	-0.3
3,495,616	+		GFF3455	0.29	-1.9
3,495,629	+		GFF3455	0.30	-0.8
3,495,671	+		GFF3455	0.33	-0.6
3,495,671	+		GFF3455	0.33	-1.4
3,495,671	+		GFF3455	0.33	-1.1
3,495,679	-		GFF3455	0.34	-1.0
3,495,679	-		GFF3455	0.34	-0.7
3,495,679	-		GFF3455	0.34	-2.0
3,495,679	-		GFF3455	0.34	-0.9
3,495,679	-		GFF3455	0.34	-1.7
3,495,680	+		GFF3455	0.34	-1.6
3,495,689	-		GFF3455	0.35	-1.8
3,495,690	+		GFF3455	0.35	-1.4
3,495,695	+		GFF3455	0.35	-1.8
3,495,698	-		GFF3455	0.36	-0.3
3,495,698	-		GFF3455	0.36	-0.7
3,495,698	-		GFF3455	0.36	-1.9
3,495,706	-		GFF3455	0.36	-0.7
3,495,728	+		GFF3455	0.38	-1.2
3,495,733	+		GFF3455	0.39	-2.2
3,495,733	+		GFF3455	0.39	-2.1
3,495,733	+		GFF3455	0.39	-1.4
3,495,741	-		GFF3455	0.39	-1.7
3,495,741	-		GFF3455	0.39	-2.1
3,495,747	+		GFF3455	0.40	-1.7
3,495,750	+		GFF3455	0.40	-0.6
3,495,752	+		GFF3455	0.40	-2.7
3,495,790	+		GFF3455	0.43	-0.7
3,495,798	-		GFF3455	0.44	-2.1
3,495,798	-		GFF3455	0.44	-0.6
3,495,807	+		GFF3455	0.45	-2.5
3,495,810	-		GFF3455	0.45	-0.5
3,495,848	+		GFF3455	0.48	-1.7
3,495,853	+		GFF3455	0.48	-0.8
3,495,856	-		GFF3455	0.49	-2.1
3,495,861	-		GFF3455	0.49	-2.1
3,495,919	+		GFF3455	0.54	-2.2
3,495,935	-		GFF3455	0.55	-2.4
3,495,978	+		GFF3455	0.59	-2.2
3,496,006	+		GFF3455	0.61	-1.2
3,496,006	+		GFF3455	0.61	-2.4
3,496,006	+		GFF3455	0.61	-0.4
3,496,006	+		GFF3455	0.61	-1.4
3,496,009	-		GFF3455	0.61	-1.5
3,496,009	-		GFF3455	0.61	-0.7
3,496,014	-		GFF3455	0.62	-0.5
3,496,014	-		GFF3455	0.62	-0.6
3,496,014	-		GFF3455	0.62	-1.4
3,496,014	-		GFF3455	0.62	-1.3
3,496,014	-		GFF3455	0.62	-1.4
3,496,014	-		GFF3455	0.62	-1.2
3,496,024	-		GFF3455	0.63	+0.2
3,496,042	-		GFF3455	0.64	-3.3
3,496,055	-		GFF3455	0.65	-1.8
3,496,090	+		GFF3455	0.68	-1.9
3,496,113	+		GFF3455	0.70	-0.5
3,496,115	-		GFF3455	0.70	-2.3
3,496,119	-		GFF3455	0.70	-0.5
3,496,123	+		GFF3455	0.71	-1.9
3,496,158	-		GFF3455	0.74	-2.5
3,496,164	+		GFF3455	0.74	-1.5
3,496,169	+		GFF3455	0.75	-1.7
3,496,169	+		GFF3455	0.75	-2.1
3,496,169	+		GFF3455	0.75	-1.1
3,496,172	-		GFF3455	0.75	-1.5
3,496,177	-		GFF3455	0.75	-0.7
3,496,177	-		GFF3455	0.75	-1.5
3,496,177	-		GFF3455	0.75	-1.9
3,496,212	+		GFF3455	0.78	-1.3
3,496,214	+		GFF3455	0.78	-2.5
3,496,222	+		GFF3455	0.79	-1.2
3,496,222	+		GFF3455	0.79	-0.6
3,496,222	+		GFF3455	0.79	-2.4
3,496,222	+		GFF3455	0.79	-1.9
3,496,222	+		GFF3455	0.79	-1.5
3,496,230	-		GFF3455	0.80	-2.1
3,496,230	-		GFF3455	0.80	-2.4
3,496,230	-		GFF3455	0.80	-2.2
3,496,234	+		GFF3455	0.80	-1.1
3,496,242	-		GFF3455	0.81	-1.9
3,496,244	+		GFF3455	0.81	-0.7
3,496,252	-		GFF3455	0.81	+0.2
3,496,261	+		GFF3455	0.82	-0.6
3,496,277	+		GFF3455	0.84	-0.7
3,496,284	+		GFF3455	0.84	-3.6
3,496,285	-		GFF3455	0.84	-2.2
3,496,290	+		GFF3455	0.85	-1.9
3,496,293	-		GFF3455	0.85	-2.0
3,496,293	-		GFF3455	0.85	-2.3
3,496,298	-		GFF3455	0.85	-1.6
3,496,334	+		GFF3455	0.88	-1.9
3,496,335	+		GFF3455	0.88	-1.7
3,496,348	+		GFF3455	0.89	-0.7
3,496,348	+		GFF3455	0.89	-1.7
3,496,356	-				-0.6
3,496,359	+				-2.1
3,496,359	+				+0.3
3,496,367	-				-1.9
3,496,367	-				-1.1
3,496,367	-				-1.8
3,496,367	-				-0.9
3,496,367	-				-1.3
3,496,374	-				-1.0
3,496,394	+				-1.8
3,496,394	+				-1.0
3,496,451	-				-1.9
3,496,507	+				+0.6
3,496,507	+				-0.3
3,496,515	-				-0.8
3,496,518	+				+0.4
3,496,564	+				-1.4
3,496,564	+				-0.2
3,496,569	+				+0.3
3,496,572	-		GFF3456	0.10	-0.4
3,496,589	+		GFF3456	0.12	-0.9
3,496,589	+		GFF3456	0.12	-0.4
3,496,589	+		GFF3456	0.12	-0.9
3,496,602	+		GFF3456	0.13	-1.7
3,496,622	+		GFF3456	0.15	-0.8
3,496,648	+		GFF3456	0.18	-0.2
3,496,648	+		GFF3456	0.18	+0.0
3,496,648	+		GFF3456	0.18	-1.7
3,496,648	+		GFF3456	0.18	-1.6
3,496,648	+		GFF3456	0.18	-2.3
3,496,648	+		GFF3456	0.18	-0.4
3,496,648	+		GFF3456	0.18	+1.0
3,496,648	+		GFF3456	0.18	-0.5
3,496,648	+		GFF3456	0.18	-2.1
3,496,648	+		GFF3456	0.18	+0.4
3,496,648	+		GFF3456	0.18	+1.2
3,496,648	+		GFF3456	0.18	+0.7
3,496,656	-		GFF3456	0.18	-1.1
3,496,656	-		GFF3456	0.18	-1.4
3,496,656	-		GFF3456	0.18	-0.2
3,496,656	-		GFF3456	0.18	+1.1
3,496,656	-		GFF3456	0.18	+0.4
3,496,656	-		GFF3456	0.18	-0.6
3,496,656	-		GFF3456	0.18	-0.6
3,496,661	-		GFF3456	0.19	+0.5
3,496,687	-		GFF3456	0.22	-0.7
3,496,707	-		GFF3456	0.24	-0.1
3,496,729	+		GFF3456	0.26	+0.2
3,496,729	+		GFF3456	0.26	+1.8
3,496,729	+		GFF3456	0.26	-0.7
3,496,737	-		GFF3456	0.27	-0.0
3,496,737	-		GFF3456	0.27	-0.7
3,496,737	-		GFF3456	0.27	+1.8
3,496,737	-		GFF3456	0.27	+0.3
3,496,756	-		GFF3456	0.28	+0.0
3,496,757	-		GFF3456	0.29	-2.0
3,496,757	-		GFF3456	0.29	+0.2
3,496,761	-		GFF3456	0.29	-0.4
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	-0.9
3,496,787	+		GFF3456	0.32	-0.1
3,496,787	+		GFF3456	0.32	-0.8
3,496,787	+		GFF3456	0.32	-1.3
3,496,787	+		GFF3456	0.32	-1.5
3,496,787	+		GFF3456	0.32	-1.3
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	-0.1
3,496,787	+		GFF3456	0.32	-0.5
3,496,787	+		GFF3456	0.32	-1.8
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	-1.9
3,496,787	+		GFF3456	0.32	+0.8
3,496,787	+		GFF3456	0.32	-0.5
3,496,787	+		GFF3456	0.32	-1.5
3,496,794	-		GFF3456	0.32	+0.5
3,496,794	-		GFF3456	0.32	+0.1
3,496,795	-		GFF3456	0.32	+0.5
3,496,795	-		GFF3456	0.32	-1.4
3,496,795	-		GFF3456	0.32	+0.4
3,496,795	-		GFF3456	0.32	-1.0
3,496,795	-		GFF3456	0.32	-1.4
3,496,795	-		GFF3456	0.32	+0.1
3,496,795	-		GFF3456	0.32	-1.0
3,496,795	-		GFF3456	0.32	-0.3
3,496,795	-		GFF3456	0.32	-0.4
3,496,795	-		GFF3456	0.32	-1.5
3,496,795	-		GFF3456	0.32	+0.4
3,496,811	+		GFF3456	0.34	-1.2
3,496,813	-		GFF3456	0.34	-0.5
3,496,813	-		GFF3456	0.34	-1.4
3,496,821	+		GFF3456	0.35	-0.6
3,496,829	-		GFF3456	0.36	-1.3
3,496,829	-		GFF3456	0.36	-0.6
3,496,829	-		GFF3456	0.36	+0.7
3,496,851	-		GFF3456	0.38	-1.1
3,496,872	+		GFF3456	0.40	-0.8
3,496,872	+		GFF3456	0.40	-0.7
3,496,872	+		GFF3456	0.40	-1.6
3,496,890	+		GFF3456	0.42	-0.6
3,496,891	+		GFF3456	0.42	-2.3
3,496,891	+		GFF3456	0.42	-1.1
3,496,891	+		GFF3456	0.42	-1.0
3,496,891	+		GFF3456	0.42	+0.2
3,496,899	-		GFF3456	0.43	-0.6
3,496,899	-		GFF3456	0.43	+0.8
3,496,911	-		GFF3456	0.44	-0.7
3,496,916	+		GFF3456	0.44	-1.6
3,496,921	+		GFF3456	0.45	-0.1
3,496,924	-		GFF3456	0.45	-1.3
3,496,929	-		GFF3456	0.46	-0.1
3,496,929	-		GFF3456	0.46	-1.1
3,496,929	-		GFF3456	0.46	+0.0
3,496,929	-		GFF3456	0.46	-0.1
3,496,943	+		GFF3456	0.47	+0.2
3,496,945	+		GFF3456	0.47	+0.5
3,496,947	-		GFF3456	0.48	-1.2
3,496,955	+		GFF3456	0.48	-0.0
3,496,955	+		GFF3456	0.48	-1.5
3,496,961	-		GFF3456	0.49	+0.2
3,496,971	+		GFF3456	0.50	-0.3
3,496,971	+		GFF3456	0.50	+0.7
3,496,971	+		GFF3456	0.50	-0.3
3,496,979	-		GFF3456	0.51	+0.8
3,496,981	+		GFF3456	0.51	+0.3
3,496,981	+		GFF3456	0.51	+1.0
3,496,981	+		GFF3456	0.51	-0.2
3,496,989	-		GFF3456	0.52	+0.3
3,496,989	-		GFF3456	0.52	-0.5
3,496,989	-		GFF3456	0.52	+0.2
3,496,989	-		GFF3456	0.52	-0.8
3,496,989	-		GFF3456	0.52	-1.7
3,496,989	-		GFF3456	0.52	+0.3
3,496,989	-		GFF3456	0.52	+2.2
3,496,989	-		GFF3456	0.52	-0.2
3,496,994	+		GFF3456	0.52	-0.7
3,496,994	+		GFF3456	0.52	-0.7
3,496,995	-		GFF3456	0.52	-0.5
3,496,997	+		GFF3456	0.53	+1.5
3,497,000	-		GFF3456	0.53	-1.3
3,497,002	-		GFF3456	0.53	-1.7
3,497,012	-		GFF3456	0.54	-0.5
3,497,022	+		GFF3456	0.55	+0.5
3,497,022	-		GFF3456	0.55	-0.2
3,497,025	-		GFF3456	0.55	-1.1
3,497,027	+		GFF3456	0.56	-0.6
3,497,030	-		GFF3456	0.56	-0.9
3,497,034	+		GFF3456	0.56	-1.3
3,497,034	+		GFF3456	0.56	-0.6
3,497,042	-		GFF3456	0.57	-1.8
3,497,042	-		GFF3456	0.57	-0.1
3,497,053	-		GFF3456	0.58	-0.5
3,497,070	+		GFF3456	0.60	-1.6
3,497,070	+		GFF3456	0.60	-0.8
3,497,070	-		GFF3456	0.60	-1.4
3,497,087	+		GFF3456	0.62	-1.1
3,497,087	+		GFF3456	0.62	-0.2
3,497,095	-		GFF3456	0.62	-1.1
3,497,095	-		GFF3456	0.62	-0.6
3,497,119	+		GFF3456	0.65	-0.8
3,497,121	-		GFF3456	0.65	-1.4
3,497,121	-		GFF3456	0.65	-1.3
3,497,136	+		GFF3456	0.66	+0.4
3,497,139	+		GFF3456	0.67	-0.8
3,497,182	+		GFF3456	0.71	+0.6
3,497,182	+		GFF3456	0.71	-0.6
3,497,205	+		GFF3456	0.73	-0.9
3,497,244	+		GFF3456	0.77	-0.7
3,497,246	+		GFF3456	0.77	-2.3
3,497,246	+		GFF3456	0.77	+0.3
3,497,246	+		GFF3456	0.77	-1.3
3,497,254	-		GFF3456	0.78	-0.6
3,497,254	-		GFF3456	0.78	+0.9
3,497,260	+		GFF3456	0.79	-1.0
3,497,269	-		GFF3456	0.80	-1.3
3,497,287	+		GFF3456	0.82	-0.6
3,497,288	+		GFF3456	0.82	+0.5
3,497,297	-		GFF3456	0.83	+0.6
3,497,297	-		GFF3456	0.83	-0.4
3,497,311	+		GFF3456	0.84	-0.9
3,497,311	+		GFF3456	0.84	-1.8
3,497,311	+		GFF3456	0.84	-1.8
3,497,311	+		GFF3456	0.84	-1.8
3,497,311	+		GFF3456	0.84	-0.5
3,497,311	+		GFF3456	0.84	-1.1
3,497,311	+		GFF3456	0.84	-2.3
3,497,319	+		GFF3456	0.85	-1.0
3,497,319	-		GFF3456	0.85	-1.5
3,497,319	-		GFF3456	0.85	+0.9
3,497,319	-		GFF3456	0.85	-1.4
3,497,319	-		GFF3456	0.85	+0.4
3,497,319	-		GFF3456	0.85	-0.9
3,497,319	-		GFF3456	0.85	+0.2
3,497,319	-		GFF3456	0.85	-0.5
3,497,319	-		GFF3456	0.85	-0.4
3,497,362	-		GFF3456	0.89	+0.2
3,497,390	+				-0.4
3,497,394	-				-1.2
3,497,417	+				+0.9
3,497,450	+				-1.4
3,497,455	+				+0.5
3,497,463	-				+0.6