Strain Fitness in Sphingobium sp. HT1-2 around GFF3440

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,478,509	+		GFF3437	0.44	-1.9
3,478,509	+		GFF3437	0.44	+0.1
3,478,517	-		GFF3437	0.45	-0.4
3,478,517	-		GFF3437	0.45	-1.6
3,478,563	+		GFF3437	0.51	+0.7
3,478,566	-		GFF3437	0.51	-0.8
3,478,572	-		GFF3437	0.52	-1.4
3,478,587	+		GFF3437	0.54	-2.2
3,478,600	+		GFF3437	0.56	-2.4
3,478,600	+		GFF3437	0.56	-0.7
3,478,600	+		GFF3437	0.56	+0.4
3,478,615	+		GFF3437	0.58	+0.0
3,478,618	+		GFF3437	0.58	+0.3
3,478,634	+		GFF3437	0.60	-1.3
3,478,634	+		GFF3437	0.60	+0.8
3,478,642	-		GFF3437	0.61	-1.5
3,478,674	+		GFF3437	0.65	-0.4
3,478,682	-		GFF3437	0.66	+1.2
3,478,683	-		GFF3437	0.67	+0.4
3,478,772	-		GFF3437	0.78	-1.9
3,478,794	-		GFF3437	0.81	-0.6
3,478,800	+		GFF3437	0.82	+1.2
3,478,807	+		GFF3437	0.83	+0.3
3,478,807	+		GFF3437	0.83	-0.4
3,478,807	+		GFF3437	0.83	+0.4
3,478,807	+		GFF3437	0.83	+0.8
3,478,815	-		GFF3437	0.84	-0.8
3,478,815	-		GFF3437	0.84	-0.5
3,478,857	-		GFF3437	0.89	+0.4
3,478,857	-		GFF3437	0.89	-1.2
3,478,858	-		GFF3437	0.89	-0.8
3,478,858	-		GFF3437	0.89	-0.2
3,478,899	-				-0.1
3,478,899	-				+0.2
3,478,899	-				+1.8
3,478,920	-				+0.3
3,478,926	+				-1.4
3,478,940	-				-0.5
3,478,988	+		GFF3438	0.30	+0.5
3,478,996	-		GFF3438	0.35	-0.7
3,478,996	-		GFF3438	0.35	-0.8
3,478,996	-		GFF3438	0.35	-0.8
3,478,996	-		GFF3438	0.35	-1.6
3,479,011	-		GFF3438	0.45	+0.2
3,479,011	-		GFF3438	0.45	+1.3
3,479,011	-		GFF3438	0.45	-1.9
3,479,030	-		GFF3438	0.58	-1.4
3,479,079	+				+0.5
3,479,087	-				-0.4
3,479,090	+				-1.2
3,479,095	+				+0.7
3,479,096	+				-0.7
3,479,104	-				-1.1
3,479,104	-				+0.4
3,479,139	-				+0.1
3,479,158	+				-0.6
3,479,158	+				+1.6
3,479,166	-				+0.2
3,479,178	-				-1.9
3,479,230	+				-0.9
3,479,230	+				+1.0
3,479,235	+				-1.3
3,479,236	-				-1.1
3,479,238	+				-0.4
3,479,238	-				-1.4
3,479,238	-				-1.9
3,479,245	-				+0.5
3,479,246	-				-2.0
3,479,253	-				-0.9
3,479,292	+		GFF3439	0.18	-0.6
3,479,294	+		GFF3439	0.19	-1.1
3,479,294	+		GFF3439	0.19	-0.5
3,479,294	+		GFF3439	0.19	-1.1
3,479,294	+		GFF3439	0.19	-0.6
3,479,294	+		GFF3439	0.19	-2.1
3,479,294	+		GFF3439	0.19	-0.5
3,479,302	-		GFF3439	0.23	-0.6
3,479,302	-		GFF3439	0.23	-2.1
3,479,302	-		GFF3439	0.23	-0.5
3,479,302	-		GFF3439	0.23	-1.5
3,479,302	-		GFF3439	0.23	-0.8
3,479,327	+		GFF3439	0.33	-0.8
3,479,327	+		GFF3439	0.33	-1.0
3,479,329	-		GFF3439	0.34	-0.9
3,479,335	-		GFF3439	0.37	-0.5
3,479,335	-		GFF3439	0.37	-1.2
3,479,335	-		GFF3439	0.37	-0.5
3,479,375	+		GFF3439	0.54	-1.9
3,479,381	+		GFF3439	0.56	-0.8
3,479,432	+		GFF3439	0.78	-1.2
3,479,471	+				-0.1
3,479,476	+				-1.1
3,479,476	+				-0.3
3,479,483	+				+0.3
3,479,483	+				+0.4
3,479,483	+				+0.5
3,479,483	+				+1.2
3,479,484	-				+0.8
3,479,491	-				-1.6
3,479,491	-				-0.4
3,479,491	-				+0.2
3,479,491	-				-2.1
3,479,560	-		GFF3440	0.11	-1.7
3,479,562	+		GFF3440	0.11	-1.4
3,479,562	+		GFF3440	0.11	-0.7
3,479,562	+		GFF3440	0.11	-0.4
3,479,562	+		GFF3440	0.11	-2.6
3,479,570	-		GFF3440	0.12	-1.9
3,479,570	-		GFF3440	0.12	-2.0
3,479,570	-		GFF3440	0.12	-0.5
3,479,570	-		GFF3440	0.12	-0.7
3,479,570	-		GFF3440	0.12	-0.4
3,479,570	-		GFF3440	0.12	-1.4
3,479,574	+		GFF3440	0.13	-1.9
3,479,581	-		GFF3440	0.14	-1.4
3,479,592	+		GFF3440	0.16	-1.2
3,479,600	-		GFF3440	0.17	-1.0
3,479,610	-		GFF3440	0.18	-0.6
3,479,700	-		GFF3440	0.32	-1.7
3,479,712	+		GFF3440	0.33	-1.5
3,479,732	+		GFF3440	0.36	-1.7
3,479,751	+		GFF3440	0.39	-1.4
3,479,758	+		GFF3440	0.40	-1.9
3,479,758	-		GFF3440	0.40	-1.7
3,479,759	+		GFF3440	0.40	-0.6
3,479,777	+		GFF3440	0.43	-1.5
3,479,805	-		GFF3440	0.47	-1.4
3,479,834	+		GFF3440	0.52	-0.6
3,479,872	+		GFF3440	0.57	-2.3
3,479,880	-		GFF3440	0.58	-1.5
3,479,880	-		GFF3440	0.58	-1.6
3,479,891	+		GFF3440	0.60	-1.5
3,479,910	+		GFF3440	0.63	-1.1
3,479,949	-		GFF3440	0.69	-1.0
3,479,963	+		GFF3440	0.71	-1.6
3,479,971	-		GFF3440	0.72	-1.0
3,479,983	+		GFF3440	0.74	-2.0
3,479,983	+		GFF3440	0.74	-0.6
3,479,983	+		GFF3440	0.74	-0.5
3,479,983	+		GFF3440	0.74	-1.7
3,479,983	+		GFF3440	0.74	-1.4
3,479,988	+		GFF3440	0.74	-1.4
3,479,991	-		GFF3440	0.75	-1.2
3,479,991	-		GFF3440	0.75	-0.9
3,479,991	-		GFF3440	0.75	-1.8
3,479,991	-		GFF3440	0.75	-2.1
3,480,005	+		GFF3440	0.77	-1.4
3,480,006	-		GFF3440	0.77	-0.4
3,480,011	+		GFF3440	0.78	-1.4
3,480,050	+		GFF3440	0.84	-0.5
3,480,050	+		GFF3440	0.84	-1.2
3,480,058	-		GFF3440	0.85	-1.5
3,480,058	-		GFF3440	0.85	-0.8
3,480,058	-		GFF3440	0.85	-0.5
3,480,058	-		GFF3440	0.85	-1.7
3,480,063	-		GFF3440	0.85	-0.5
3,480,063	-		GFF3440	0.85	-1.1
3,480,064	+		GFF3440	0.86	-1.4
3,480,064	+		GFF3440	0.86	-0.8
3,480,072	-		GFF3440	0.87	-2.0
3,480,105	+				-0.7
3,480,105	-				-1.2
3,480,105	-				-1.4
3,480,123	+				+0.2
3,480,133	+				-0.0
3,480,133	+				+0.6
3,480,133	+				-0.6
3,480,133	+				-0.4
3,480,134	+				-1.1
3,480,141	-				-2.0
3,480,142	-				-0.5
3,480,151	-				-1.3
3,480,162	-				+1.6
3,480,162	-				+0.0
3,480,248	+				-0.4
3,480,248	+				+0.2
3,480,248	+				-0.6
3,480,256	-				-0.4
3,480,269	+				-1.0
3,480,295	+				+0.6
3,480,303	-				-0.4
3,480,303	-				+0.5
3,480,303	-				-1.1
3,480,309	-				-0.2
3,480,333	+				-0.4
3,480,342	-				-0.1
3,480,348	-				-2.0
3,480,433	+		GFF3441	0.23	-0.1
3,480,433	+		GFF3441	0.23	-1.5
3,480,433	+		GFF3441	0.23	-2.4
3,480,441	-		GFF3441	0.25	+0.5
3,480,441	-		GFF3441	0.25	+0.5
3,480,441	-		GFF3441	0.25	-1.8
3,480,441	-		GFF3441	0.25	-0.3
3,480,483	+		GFF3441	0.33	-1.3
3,480,483	+		GFF3441	0.33	+1.0
3,480,517	+		GFF3441	0.39	-2.0
3,480,517	+		GFF3441	0.39	-1.8
3,480,517	-		GFF3441	0.39	-1.2
3,480,524	+		GFF3441	0.40	-0.9
3,480,549	+		GFF3441	0.45	+0.3
3,480,559	-		GFF3441	0.47	+0.4
3,480,562	+		GFF3441	0.47	+0.5
3,480,562	+		GFF3441	0.47	-0.9
3,480,570	-		GFF3441	0.49	+1.2
3,480,642	-		GFF3441	0.63	-0.8
3,480,687	+		GFF3441	0.71	-1.2
3,480,688	+		GFF3441	0.71	+0.1
3,480,688	+		GFF3441	0.71	+1.3
3,480,722	-		GFF3441	0.78	-2.1
3,480,723	+		GFF3441	0.78	-0.7
3,480,731	-		GFF3441	0.79	+0.7
3,480,751	-		GFF3441	0.83	-1.1
3,480,794	+				-0.8
3,480,802	-				-1.2
3,480,802	-				+0.2
3,480,804	+				-0.3
3,480,804	+				-0.7
3,480,804	+				-1.0
3,480,809	-				-0.4
3,480,810	+				+0.0
3,480,812	-				-0.2
3,480,812	-				-2.6
3,480,812	-				-2.6
3,480,812	-				-1.2
3,480,833	-				-1.3
3,480,842	+				-0.1
3,480,848	+				-1.4
3,480,848	+				+0.6
3,480,848	+				-1.5
3,480,848	+				+0.9
3,480,849	+				-2.5
3,480,856	-				+1.4
3,480,856	-				-0.9
3,480,862	+				+0.4
3,480,895	+				-0.2
3,480,900	+				-1.0
3,480,900	+				+0.6
3,480,900	+				-0.4
3,480,900	+				-2.4
3,480,900	+				-0.8
3,480,900	+				-0.3
3,480,900	+				+0.1
3,480,900	+				-0.9
3,480,905	+				-0.2
3,480,908	-				-0.8
3,480,908	-				+1.3
3,480,974	-				-1.0
3,480,992	-				-0.8
3,480,993	+				-0.6
3,480,995	+				+0.5
3,480,999	-				-0.0
3,480,999	-				+1.2
3,481,005	+				-0.9
3,481,006	+				-3.1
3,481,009	-				+0.8
3,481,013	-				-1.6
3,481,014	-				+0.6
3,481,014	-				+0.8
3,481,065	+				-0.8
3,481,065	+				+0.2
3,481,073	-		GFF3442	0.10	-2.4
3,481,073	-		GFF3442	0.10	+0.5
3,481,073	-		GFF3442	0.10	+0.2
3,481,073	-		GFF3442	0.10	-0.0
3,481,073	-		GFF3442	0.10	-1.2
3,481,073	-		GFF3442	0.10	+1.1
3,481,073	-		GFF3442	0.10	+0.6
3,481,077	+		GFF3442	0.10	-2.0
3,481,083	-		GFF3442	0.11	-1.6
3,481,083	-		GFF3442	0.11	+0.3
3,481,083	-		GFF3442	0.11	-1.0
3,481,084	-		GFF3442	0.11	-1.2
3,481,084	-		GFF3442	0.11	-1.6
3,481,084	-		GFF3442	0.11	-2.3
3,481,086	+		GFF3442	0.11	+0.1
3,481,094	-		GFF3442	0.11	-1.3
3,481,104	-		GFF3442	0.12	+0.1
3,481,120	+		GFF3442	0.12	-1.4
3,481,128	+		GFF3442	0.13	-1.2
3,481,128	-		GFF3442	0.13	-2.0
3,481,128	-		GFF3442	0.13	+0.1
3,481,128	-		GFF3442	0.13	+0.5
3,481,131	-		GFF3442	0.13	-0.5
3,481,141	-		GFF3442	0.13	+1.1
3,481,146	+		GFF3442	0.14	-0.6
3,481,146	+		GFF3442	0.14	+0.5
3,481,159	+		GFF3442	0.14	-1.0