Strain Fitness in Sphingobium sp. HT1-2 around GFF3398

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,441,815	-		GFF3397	0.53	+0.0
3,441,827	-		GFF3397	0.54	+0.8
3,441,882	-		GFF3397	0.57	+2.6
3,441,887	+		GFF3397	0.57	-0.2
3,441,887	+		GFF3397	0.57	+0.2
3,441,889	+		GFF3397	0.57	-2.0
3,441,889	+		GFF3397	0.57	-0.4
3,441,889	+		GFF3397	0.57	-1.7
3,441,896	-		GFF3397	0.58	+1.4
3,441,897	-		GFF3397	0.58	-1.0
3,441,897	-		GFF3397	0.58	+1.2
3,441,897	-		GFF3397	0.58	+0.1
3,441,897	-		GFF3397	0.58	+1.3
3,441,897	-		GFF3397	0.58	+1.1
3,441,902	-		GFF3397	0.58	+1.3
3,441,907	-		GFF3397	0.58	+0.2
3,441,916	-		GFF3397	0.59	+0.1
3,441,959	-		GFF3397	0.61	+0.5
3,441,964	-		GFF3397	0.61	+0.6
3,441,970	+		GFF3397	0.62	-0.0
3,441,970	+		GFF3397	0.62	-0.0
3,441,972	-		GFF3397	0.62	+1.8
3,441,982	+		GFF3397	0.62	+2.0
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	-1.6
3,442,001	+		GFF3397	0.63	-0.1
3,442,001	+		GFF3397	0.63	-0.2
3,442,001	+		GFF3397	0.63	-0.3
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	+1.1
3,442,001	+		GFF3397	0.63	-0.0
3,442,001	+		GFF3397	0.63	+1.7
3,442,007	-		GFF3397	0.64	+0.6
3,442,009	-		GFF3397	0.64	+0.3
3,442,009	-		GFF3397	0.64	+0.3
3,442,009	-		GFF3397	0.64	+0.5
3,442,009	-		GFF3397	0.64	-1.1
3,442,009	-		GFF3397	0.64	-0.4
3,442,009	-		GFF3397	0.64	-0.5
3,442,009	-		GFF3397	0.64	+0.4
3,442,009	-		GFF3397	0.64	-1.0
3,442,009	-		GFF3397	0.64	-1.2
3,442,009	-		GFF3397	0.64	+0.3
3,442,009	-		GFF3397	0.64	-0.4
3,442,018	+		GFF3397	0.64	+0.6
3,442,028	+		GFF3397	0.65	-0.5
3,442,028	+		GFF3397	0.65	+0.7
3,442,033	+		GFF3397	0.65	-0.4
3,442,036	-		GFF3397	0.65	+0.5
3,442,036	-		GFF3397	0.65	-0.0
3,442,036	-		GFF3397	0.65	+0.0
3,442,061	-		GFF3397	0.66	+0.1
3,442,073	-		GFF3397	0.67	-0.6
3,442,073	-		GFF3397	0.67	-1.8
3,442,078	+		GFF3397	0.67	-0.7
3,442,089	+		GFF3397	0.68	-0.1
3,442,089	+		GFF3397	0.68	+0.3
3,442,102	+		GFF3397	0.69	-0.9
3,442,102	+		GFF3397	0.69	-0.7
3,442,102	+		GFF3397	0.69	-1.7
3,442,102	+		GFF3397	0.69	+0.8
3,442,102	+		GFF3397	0.69	-1.7
3,442,102	+		GFF3397	0.69	-1.4
3,442,102	+		GFF3397	0.69	+1.3
3,442,102	+		GFF3397	0.69	-0.9
3,442,102	+		GFF3397	0.69	+0.3
3,442,104	+		GFF3397	0.69	+1.4
3,442,110	-		GFF3397	0.69	+0.4
3,442,110	-		GFF3397	0.69	+0.8
3,442,115	+		GFF3397	0.69	-0.7
3,442,120	+		GFF3397	0.70	+0.8
3,442,139	-		GFF3397	0.71	+0.8
3,442,152	+		GFF3397	0.71	-0.4
3,442,160	-		GFF3397	0.72	-0.4
3,442,187	-		GFF3397	0.73	-1.0
3,442,205	+		GFF3397	0.74	-1.0
3,442,235	+		GFF3397	0.76	+0.9
3,442,235	+		GFF3397	0.76	-0.0
3,442,235	+		GFF3397	0.76	+1.5
3,442,235	+		GFF3397	0.76	-0.9
3,442,235	+		GFF3397	0.76	-1.7
3,442,237	+		GFF3397	0.76	+1.6
3,442,239	-		GFF3397	0.76	+0.3
3,442,239	-		GFF3397	0.76	-0.6
3,442,241	-		GFF3397	0.76	-0.4
3,442,241	-		GFF3397	0.76	+0.1
3,442,243	-		GFF3397	0.76	+0.2
3,442,243	-		GFF3397	0.76	+0.5
3,442,245	-		GFF3397	0.76	+1.4
3,442,245	-		GFF3397	0.76	+0.5
3,442,262	-		GFF3397	0.77	+0.6
3,442,271	+		GFF3397	0.78	-0.0
3,442,280	+		GFF3397	0.78	+0.6
3,442,292	+		GFF3397	0.79	+2.3
3,442,292	+		GFF3397	0.79	+1.4
3,442,292	+		GFF3397	0.79	-0.2
3,442,292	+		GFF3397	0.79	-0.6
3,442,300	-		GFF3397	0.79	+0.2
3,442,300	-		GFF3397	0.79	+0.7
3,442,300	-		GFF3397	0.79	+1.1
3,442,300	-		GFF3397	0.79	-0.6
3,442,300	-		GFF3397	0.79	+0.1
3,442,306	-		GFF3397	0.80	+0.7
3,442,306	-		GFF3397	0.80	-0.6
3,442,361	+		GFF3397	0.82	+0.3
3,442,371	+		GFF3397	0.83	+0.0
3,442,371	+		GFF3397	0.83	-0.3
3,442,376	+		GFF3397	0.83	-0.8
3,442,376	+		GFF3397	0.83	-0.3
3,442,376	+		GFF3397	0.83	+0.9
3,442,384	-		GFF3397	0.84	+0.1
3,442,420	-		GFF3397	0.86	+1.2
3,442,439	+		GFF3397	0.87	+0.5
3,442,462	-		GFF3397	0.88	+0.6
3,442,462	-		GFF3397	0.88	+0.7
3,442,462	-		GFF3397	0.88	-0.6
3,442,462	-		GFF3397	0.88	-0.5
3,442,462	-		GFF3397	0.88	-0.3
3,442,471	+		GFF3397	0.88	+0.6
3,442,481	+		GFF3397	0.89	-0.5
3,442,489	-		GFF3397	0.89	-1.0
3,442,489	-		GFF3397	0.89	+1.0
3,442,506	+				+0.4
3,442,509	-				+1.4
3,442,511	+				+0.3
3,442,511	+				-1.3
3,442,514	-				-1.2
3,442,514	-				-0.8
3,442,516	+				-0.4
3,442,519	-				+0.6
3,442,523	+				-0.8
3,442,523	+				-2.0
3,442,523	+				+0.8
3,442,523	+				-0.8
3,442,523	+				-1.2
3,442,524	-				+0.4
3,442,531	-				+0.6
3,442,531	-				+0.4
3,442,531	-				+0.1
3,442,541	+				-0.0
3,442,555	-				+0.9
3,442,557	-				+0.5
3,442,560	-				+1.2
3,442,564	+				+1.6
3,442,564	+				+0.3
3,442,565	-				-0.5
3,442,602	+				+0.8
3,442,602	+				-0.2
3,442,602	+				-0.8
3,442,602	+				+0.2
3,442,605	-				+0.1
3,442,610	-				-0.1
3,442,664	+				+2.1
3,442,682	-				-0.7
3,442,702	+				-0.8
3,442,747	+				-0.3
3,442,747	+				+1.0
3,442,747	+				+0.5
3,442,747	+				-0.5
3,442,752	+				+0.5
3,442,755	-				+1.8
3,442,755	-				-0.4
3,442,762	+				+0.8
3,442,776	-				-0.7
3,442,806	+				-0.3
3,442,814	-				-0.2
3,442,841	-				+0.7
3,442,841	-				+0.8
3,442,843	+				-0.7
3,442,843	+				+0.2
3,442,851	-				-0.8
3,442,851	-				+0.9
3,442,851	-				-0.7
3,442,851	-				-0.9
3,442,904	-				+0.1
3,442,936	+				+0.5
3,442,942	+				+0.9
3,442,944	-				+0.9
3,442,946	+				-1.2
3,442,952	+				-1.4
3,442,954	-				+0.4
3,442,960	-				+0.1
3,442,962	-				+0.7
3,443,015	-		GFF3398	0.13	-0.5
3,443,020	+		GFF3398	0.13	-0.5
3,443,026	+		GFF3398	0.14	-0.5
3,443,026	+		GFF3398	0.14	-1.2
3,443,026	+		GFF3398	0.14	+0.3
3,443,026	+		GFF3398	0.14	+1.8
3,443,028	-		GFF3398	0.14	+0.5
3,443,031	+		GFF3398	0.14	+0.7
3,443,033	+		GFF3398	0.14	+0.3
3,443,033	+		GFF3398	0.14	-0.0
3,443,034	-		GFF3398	0.14	+0.1
3,443,036	+		GFF3398	0.14	+0.1
3,443,054	-		GFF3398	0.15	+0.9
3,443,054	-		GFF3398	0.15	-0.7
3,443,096	+		GFF3398	0.18	+0.4
3,443,124	+		GFF3398	0.20	-0.4
3,443,132	-		GFF3398	0.20	+0.3
3,443,132	-		GFF3398	0.20	-0.3
3,443,132	-		GFF3398	0.20	-1.2
3,443,137	+		GFF3398	0.20	-1.3
3,443,137	+		GFF3398	0.20	-1.4
3,443,137	+		GFF3398	0.20	-1.0
3,443,137	+		GFF3398	0.20	+0.2
3,443,143	-		GFF3398	0.21	+1.5
3,443,145	-		GFF3398	0.21	+0.2
3,443,177	-		GFF3398	0.23	+1.2
3,443,195	-		GFF3398	0.24	+0.5
3,443,205	+		GFF3398	0.24	+1.2
3,443,228	-		GFF3398	0.26	-1.6
3,443,230	+		GFF3398	0.26	+0.8
3,443,238	-		GFF3398	0.26	+1.5
3,443,238	-		GFF3398	0.26	+0.6
3,443,238	-		GFF3398	0.26	-0.5
3,443,262	-		GFF3398	0.28	-0.0
3,443,272	+		GFF3398	0.28	+1.0
3,443,272	-		GFF3398	0.28	+0.7
3,443,277	+		GFF3398	0.29	+0.4
3,443,280	-		GFF3398	0.29	+1.7
3,443,299	-		GFF3398	0.30	+1.1
3,443,319	-		GFF3398	0.31	-1.3
3,443,322	-		GFF3398	0.31	-0.8
3,443,341	+		GFF3398	0.33	+1.3
3,443,367	-		GFF3398	0.34	+0.1
3,443,367	-		GFF3398	0.34	-0.9
3,443,461	+		GFF3398	0.40	+0.8
3,443,463	+		GFF3398	0.40	+0.1
3,443,463	+		GFF3398	0.40	-0.9
3,443,463	+		GFF3398	0.40	+0.4
3,443,463	+		GFF3398	0.40	-1.5
3,443,465	+		GFF3398	0.40	-1.0
3,443,471	-		GFF3398	0.40	+1.2
3,443,471	-		GFF3398	0.40	+1.7
3,443,473	-		GFF3398	0.41	+0.8
3,443,489	+		GFF3398	0.41	+0.7
3,443,519	+		GFF3398	0.43	-0.4
3,443,519	-		GFF3398	0.43	-0.3
3,443,534	+		GFF3398	0.44	+0.8
3,443,535	-		GFF3398	0.44	+0.5
3,443,542	+		GFF3398	0.45	+1.3
3,443,542	+		GFF3398	0.45	-0.4
3,443,550	+		GFF3398	0.45	-0.4
3,443,550	-		GFF3398	0.45	+1.4
3,443,550	-		GFF3398	0.45	+1.2
3,443,550	-		GFF3398	0.45	-1.0
3,443,550	-		GFF3398	0.45	+1.0
3,443,577	+		GFF3398	0.47	-1.3
3,443,577	+		GFF3398	0.47	+0.8
3,443,577	+		GFF3398	0.47	+1.7
3,443,582	+		GFF3398	0.47	+0.2
3,443,585	-		GFF3398	0.47	-0.1
3,443,585	-		GFF3398	0.47	-1.6
3,443,585	-		GFF3398	0.47	-0.1
3,443,585	-		GFF3398	0.47	+0.4
3,443,585	-		GFF3398	0.47	-0.7
3,443,614	-		GFF3398	0.49	-0.0
3,443,698	+		GFF3398	0.54	+1.2
3,443,698	+		GFF3398	0.54	+1.2
3,443,698	+		GFF3398	0.54	-0.1
3,443,698	+		GFF3398	0.54	+0.1
3,443,698	+		GFF3398	0.54	+0.8
3,443,698	+		GFF3398	0.54	-0.7
3,443,698	+		GFF3398	0.54	+0.6
3,443,698	+		GFF3398	0.54	+1.2
3,443,704	-		GFF3398	0.54	+0.9
3,443,704	-		GFF3398	0.54	-0.6
3,443,706	-		GFF3398	0.54	+0.3
3,443,706	-		GFF3398	0.54	+1.9
3,443,706	-		GFF3398	0.54	-1.2
3,443,706	-		GFF3398	0.54	-0.7
3,443,706	-		GFF3398	0.54	-1.0
3,443,706	-		GFF3398	0.54	-1.3
3,443,710	-		GFF3398	0.55	+1.7
3,443,711	+		GFF3398	0.55	+0.7
3,443,737	-		GFF3398	0.56	+1.2
3,443,748	+		GFF3398	0.57	+0.7
3,443,758	+		GFF3398	0.58	-1.1
3,443,759	-		GFF3398	0.58	+0.5
3,443,759	-		GFF3398	0.58	-0.5
3,443,761	-		GFF3398	0.58	+0.5
3,443,761	-		GFF3398	0.58	+1.4
3,443,766	-		GFF3398	0.58	-0.7
3,443,777	+		GFF3398	0.59	-0.7
3,443,834	+		GFF3398	0.62	+0.5
3,443,849	+		GFF3398	0.63	+1.0
3,443,857	-		GFF3398	0.64	-0.9
3,443,857	-		GFF3398	0.64	-0.4
3,443,903	-		GFF3398	0.66	+0.1
3,443,929	+		GFF3398	0.68	+2.3
3,443,965	+		GFF3398	0.70	-0.3
3,443,971	+		GFF3398	0.70	+0.8
3,443,991	+		GFF3398	0.72	-0.6
3,443,991	+		GFF3398	0.72	+0.9
3,443,991	+		GFF3398	0.72	-0.6
3,443,999	-		GFF3398	0.72	+0.5
3,443,999	-		GFF3398	0.72	+1.2
3,444,035	-		GFF3398	0.74	+2.2
3,444,035	-		GFF3398	0.74	-0.5
3,444,041	+		GFF3398	0.75	-1.2
3,444,046	+		GFF3398	0.75	+0.3
3,444,046	+		GFF3398	0.75	+0.2
3,444,049	-		GFF3398	0.75	-1.2
3,444,049	-		GFF3398	0.75	-0.2
3,444,051	+		GFF3398	0.75	-0.4
3,444,051	+		GFF3398	0.75	+0.8
3,444,051	+		GFF3398	0.75	-0.0
3,444,051	+		GFF3398	0.75	-0.4
3,444,051	+		GFF3398	0.75	+1.7
3,444,051	+		GFF3398	0.75	+0.4
3,444,051	+		GFF3398	0.75	+0.6
3,444,054	-		GFF3398	0.75	-0.1
3,444,057	+		GFF3398	0.76	+0.9
3,444,059	-		GFF3398	0.76	+0.6
3,444,059	-		GFF3398	0.76	+1.2
3,444,059	-		GFF3398	0.76	+0.4
3,444,059	-		GFF3398	0.76	+0.4
3,444,059	-		GFF3398	0.76	-0.2
3,444,064	-		GFF3398	0.76	-0.6
3,444,079	+		GFF3398	0.77	+0.5
3,444,079	+		GFF3398	0.77	-0.1
3,444,079	+		GFF3398	0.77	+0.9
3,444,079	+		GFF3398	0.77	+1.1
3,444,079	+		GFF3398	0.77	-0.2
3,444,079	+		GFF3398	0.77	+0.4
3,444,085	-		GFF3398	0.77	-1.5
3,444,087	-		GFF3398	0.77	+0.2
3,444,087	-		GFF3398	0.77	+0.9
3,444,087	-		GFF3398	0.77	-1.1
3,444,087	-		GFF3398	0.77	+1.0
3,444,091	+		GFF3398	0.78	-0.6
3,444,097	+		GFF3398	0.78	+0.3
3,444,137	-		GFF3398	0.80	-0.4
3,444,166	+		GFF3398	0.82	+0.6
3,444,174	-		GFF3398	0.83	+0.2
3,444,189	-		GFF3398	0.83	+0.1
3,444,206	+		GFF3398	0.84	-1.8
3,444,206	+		GFF3398	0.84	-0.2
3,444,206	+		GFF3398	0.84	+0.5
3,444,206	+		GFF3398	0.84	-0.0
3,444,214	+		GFF3398	0.85	+0.8
3,444,221	+		GFF3398	0.85	-1.0
3,444,238	+		GFF3398	0.86	+1.7
3,444,238	+		GFF3398	0.86	-0.0
3,444,240	+		GFF3398	0.87	-0.0
3,444,250	+		GFF3398	0.87	+0.7
3,444,256	-		GFF3398	0.87	+0.8
3,444,263	+		GFF3398	0.88	+1.4
3,444,266	-		GFF3398	0.88	-0.7
3,444,270	+		GFF3398	0.88	-0.2
3,444,302	+				-1.3
3,444,302	-				+0.6
3,444,313	+				-0.3
3,444,337	+				+0.6
3,444,347	+				+0.6
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