Strain Fitness in Sphingobium sp. HT1-2 around GFF3362

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,412,277	+		GFF3361	0.64	+0.9
3,412,277	+		GFF3361	0.64	-0.6
3,412,285	-		GFF3361	0.64	+0.7
3,412,285	-		GFF3361	0.64	+0.2
3,412,285	-		GFF3361	0.64	+0.4
3,412,288	+		GFF3361	0.64	-1.0
3,412,288	+		GFF3361	0.64	+0.7
3,412,288	+		GFF3361	0.64	-1.1
3,412,288	+		GFF3361	0.64	-0.5
3,412,296	-		GFF3361	0.65	+0.6
3,412,296	-		GFF3361	0.65	-0.1
3,412,298	+		GFF3361	0.65	-0.8
3,412,308	+		GFF3361	0.65	-2.0
3,412,311	-		GFF3361	0.65	-1.0
3,412,319	+		GFF3361	0.65	-1.8
3,412,319	+		GFF3361	0.65	-0.8
3,412,323	-		GFF3361	0.66	-0.7
3,412,328	-		GFF3361	0.66	+0.5
3,412,407	+		GFF3361	0.69	-0.0
3,412,425	-		GFF3361	0.69	+0.3
3,412,458	+		GFF3361	0.71	+0.9
3,412,458	+		GFF3361	0.71	+1.0
3,412,458	+		GFF3361	0.71	-0.4
3,412,458	+		GFF3361	0.71	+2.0
3,412,458	+		GFF3361	0.71	-1.6
3,412,458	+		GFF3361	0.71	-1.1
3,412,459	-		GFF3361	0.71	-0.6
3,412,466	-		GFF3361	0.71	+0.9
3,412,466	-		GFF3361	0.71	+1.0
3,412,466	-		GFF3361	0.71	-1.4
3,412,466	-		GFF3361	0.71	-1.0
3,412,466	-		GFF3361	0.71	-1.5
3,412,466	-		GFF3361	0.71	+1.0
3,412,473	+		GFF3361	0.71	-0.3
3,412,473	+		GFF3361	0.71	-0.5
3,412,473	+		GFF3361	0.71	+1.4
3,412,473	+		GFF3361	0.71	-1.1
3,412,473	+		GFF3361	0.71	-1.2
3,412,473	+		GFF3361	0.71	-0.2
3,412,473	+		GFF3361	0.71	+0.2
3,412,473	+		GFF3361	0.71	-0.3
3,412,473	+		GFF3361	0.71	-1.3
3,412,481	-		GFF3361	0.72	-1.3
3,412,481	-		GFF3361	0.72	+1.6
3,412,481	-		GFF3361	0.72	-0.3
3,412,481	-		GFF3361	0.72	-0.5
3,412,481	-		GFF3361	0.72	-0.9
3,412,481	-		GFF3361	0.72	+0.3
3,412,481	-		GFF3361	0.72	+1.0
3,412,481	-		GFF3361	0.72	+0.2
3,412,481	-		GFF3361	0.72	-1.2
3,412,486	-		GFF3361	0.72	+1.4
3,412,487	+		GFF3361	0.72	-1.0
3,412,494	-		GFF3361	0.72	+0.5
3,412,521	+		GFF3361	0.73	+0.9
3,412,537	+		GFF3361	0.74	-0.4
3,412,557	+		GFF3361	0.74	+0.6
3,412,562	-		GFF3361	0.75	-0.9
3,412,564	+		GFF3361	0.75	-0.8
3,412,564	+		GFF3361	0.75	+0.0
3,412,574	+		GFF3361	0.75	+0.1
3,412,604	-		GFF3361	0.76	-0.8
3,412,605	-		GFF3361	0.76	-2.3
3,412,610	+		GFF3361	0.76	-1.4
3,412,633	-		GFF3361	0.77	-0.9
3,412,652	+		GFF3361	0.78	-1.4
3,412,655	-		GFF3361	0.78	+0.2
3,412,655	-		GFF3361	0.78	-1.0
3,412,655	-		GFF3361	0.78	-0.6
3,412,660	-		GFF3361	0.78	+0.8
3,412,680	+		GFF3361	0.79	+1.5
3,412,680	-		GFF3361	0.79	-1.0
3,412,687	-		GFF3361	0.79	-0.9
3,412,699	+		GFF3361	0.80	+1.2
3,412,748	+		GFF3361	0.82	+0.2
3,412,768	+		GFF3361	0.82	+1.6
3,412,773	+		GFF3361	0.83	-0.3
3,412,776	-		GFF3361	0.83	-0.2
3,412,808	+		GFF3361	0.84	+0.9
3,412,808	+		GFF3361	0.84	+0.2
3,412,811	-		GFF3361	0.84	+0.1
3,412,816	-		GFF3361	0.84	+0.1
3,412,860	-		GFF3361	0.86	+0.4
3,412,880	+		GFF3361	0.87	-0.1
3,412,888	-		GFF3361	0.87	+0.4
3,412,891	-		GFF3361	0.87	+0.8
3,412,904	+		GFF3361	0.88	-1.5
3,412,904	+		GFF3361	0.88	+0.9
3,412,904	+		GFF3361	0.88	-0.2
3,412,904	+		GFF3361	0.88	-0.4
3,412,904	+		GFF3361	0.88	-1.0
3,412,904	+		GFF3361	0.88	+0.2
3,412,904	+		GFF3361	0.88	+1.4
3,412,904	+		GFF3361	0.88	+0.5
3,412,904	+		GFF3361	0.88	-1.2
3,412,904	+		GFF3361	0.88	-0.3
3,412,907	-		GFF3361	0.88	-0.5
3,412,912	-		GFF3361	0.88	-0.8
3,412,912	-		GFF3361	0.88	-0.1
3,412,912	-		GFF3361	0.88	-0.7
3,412,917	+		GFF3361	0.88	-0.7
3,412,939	-		GFF3361	0.89	-1.2
3,412,939	-		GFF3361	0.89	+0.0
3,412,939	-		GFF3361	0.89	-1.3
3,412,939	-		GFF3361	0.89	-0.2
3,412,939	-		GFF3361	0.89	+0.5
3,412,967	-		GFF3361	0.90	-1.3
3,412,974	-				-0.8
3,412,974	-				+1.2
3,412,979	-				-1.3
3,412,984	+				-1.2
3,413,043	+				+0.2
3,413,046	-				+0.0
3,413,056	-				-0.1
3,413,069	+				-1.0
3,413,083	+				-0.9
3,413,117	+				+0.7
3,413,117	+				-0.8
3,413,117	+				+1.5
3,413,117	+				+0.3
3,413,164	+				-0.7
3,413,171	+				-0.1
3,413,190	-				-0.0
3,413,225	-				+0.1
3,413,518	+				-0.4
3,413,530	+				+1.2
3,413,583	+				+0.5
3,413,591	-				+1.0
3,413,592	-				+0.0
3,413,603	-				+1.0
3,413,607	+				-1.3
3,413,607	+				+1.0
3,413,607	+				-0.2
3,413,607	+				+1.2
3,413,607	+				+0.6
3,413,607	+				+1.7
3,413,615	-				+0.6
3,413,615	-				-0.4
3,413,664	+				-1.0
3,413,691	-		GFF3364	0.18	-0.4
3,413,714	+		GFF3364	0.26	-0.0
3,413,737	+		GFF3364	0.34	+1.2
3,413,737	+		GFF3364	0.34	+0.2
3,413,737	+		GFF3364	0.34	+0.1
3,413,745	-		GFF3364	0.37	-0.5
3,413,745	-		GFF3364	0.37	-0.4
3,413,838	+		GFF3364	0.69	-1.1
3,413,870	+		GFF3364	0.80	+0.6
3,413,870	+		GFF3364	0.80	+0.1
3,413,875	+		GFF3364	0.82	-0.1
3,413,878	-		GFF3364	0.83	-0.7
3,413,893	-		GFF3364	0.88	+0.8
3,413,908	+				-0.4
3,413,913	+				-0.7
3,413,916	-				+1.0
3,413,916	-				-0.5
3,413,916	-				-0.5
3,413,920	+				-0.2
3,413,920	+				+0.9
3,413,928	-				+1.1
3,413,928	-				-0.5
3,413,928	-				+0.4
3,413,928	-				-0.7
3,413,928	-				+2.3
3,413,928	-				-0.9
3,413,928	-				+0.5
3,413,928	-				+0.6
3,413,928	-				-0.8
3,413,928	-				+0.5
3,413,976	+		GFF3365	0.20	-0.1
3,413,976	+		GFF3365	0.20	+0.1
3,413,976	+		GFF3365	0.20	-0.2
3,413,976	+		GFF3365	0.20	-0.8
3,413,983	+		GFF3365	0.22	+0.8
3,413,984	-		GFF3365	0.23	-0.9
3,413,984	-		GFF3365	0.23	+0.7
3,413,984	-		GFF3365	0.23	-1.3
3,413,984	-		GFF3365	0.23	-2.0
3,413,984	-		GFF3365	0.23	-0.4
3,413,984	-		GFF3365	0.23	-0.9
3,413,986	+		GFF3365	0.24	+0.5
3,414,017	-		GFF3365	0.35	+0.9
3,414,017	-		GFF3365	0.35	+1.5
3,414,025	-		GFF3365	0.38	-0.1
3,414,062	+		GFF3365	0.52	-1.1
3,414,062	+		GFF3365	0.52	+1.5
3,414,062	+		GFF3365	0.52	-0.2
3,414,062	+		GFF3365	0.52	-0.6
3,414,062	+		GFF3365	0.52	-0.4
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	+0.2
3,414,062	+		GFF3365	0.52	-0.3
3,414,062	+		GFF3365	0.52	+1.0
3,414,062	+		GFF3365	0.52	+0.9
3,414,062	+		GFF3365	0.52	-0.9
3,414,062	+		GFF3365	0.52	-0.5
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	-0.7
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	-0.3
3,414,070	-		GFF3365	0.55	-0.4
3,414,070	-		GFF3365	0.55	-0.9
3,414,070	-		GFF3365	0.55	-0.0
3,414,070	-		GFF3365	0.55	+0.5
3,414,070	-		GFF3365	0.55	-1.7
3,414,070	-		GFF3365	0.55	-0.9
3,414,070	-		GFF3365	0.55	-0.0
3,414,070	-		GFF3365	0.55	+0.8
3,414,070	-		GFF3365	0.55	-0.4
3,414,070	-		GFF3365	0.55	-2.1
3,414,070	-		GFF3365	0.55	+0.1
3,414,070	-		GFF3365	0.55	+1.6
3,414,072	-		GFF3365	0.56	-0.2
3,414,072	-		GFF3365	0.56	-0.1
3,414,072	-		GFF3365	0.56	-0.3
3,414,095	-		GFF3365	0.64	-0.5
3,414,132	-		GFF3365	0.78	+1.1
3,414,133	+		GFF3365	0.79	+0.9
3,414,141	-		GFF3365	0.82	+0.5
3,414,149	-		GFF3365	0.85	-0.4
3,414,151	+		GFF3365	0.85	-0.5
3,414,161	+		GFF3365	0.89	-0.9
3,414,168	+				-0.4
3,414,174	-				+1.5
3,414,201	-				-0.6
3,414,209	-				-0.9
3,414,210	-				-0.5
3,414,230	-		GFF3366	0.13	+1.0
3,414,237	-		GFF3366	0.17	+0.1
3,414,254	-		GFF3366	0.25	-0.8
3,414,320	+		GFF3366	0.56	+0.2