Strain Fitness in Sphingobium sp. HT1-2 around GFF3334

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,385,549	-		GFF3333	0.34	+1.6
3,385,550	+		GFF3333	0.34	-1.2
3,385,568	+		GFF3333	0.36	-0.0
3,385,576	-		GFF3333	0.36	-2.0
3,385,595	-		GFF3333	0.38	-0.4
3,385,630	-		GFF3333	0.41	+0.2
3,385,630	-		GFF3333	0.41	-0.4
3,385,630	-		GFF3333	0.41	+0.2
3,385,630	-		GFF3333	0.41	+1.6
3,385,632	+		GFF3333	0.41	-1.5
3,385,635	-		GFF3333	0.41	+0.3
3,385,640	+		GFF3333	0.41	-1.9
3,385,648	-		GFF3333	0.42	-1.0
3,385,648	-		GFF3333	0.42	-0.9
3,385,648	-		GFF3333	0.42	-0.5
3,385,664	-		GFF3333	0.43	+0.3
3,385,681	-		GFF3333	0.44	+0.0
3,385,681	-		GFF3333	0.44	-1.3
3,385,705	+		GFF3333	0.46	-1.4
3,385,713	-		GFF3333	0.47	-1.7
3,385,728	+		GFF3333	0.48	+1.2
3,385,738	-		GFF3333	0.49	-1.2
3,385,747	+		GFF3333	0.50	-1.5
3,385,752	+		GFF3333	0.50	-1.2
3,385,755	-		GFF3333	0.50	+1.1
3,385,760	-		GFF3333	0.51	-0.8
3,385,761	+		GFF3333	0.51	-0.7
3,385,761	+		GFF3333	0.51	-1.4
3,385,761	+		GFF3333	0.51	-0.5
3,385,761	+		GFF3333	0.51	-0.8
3,385,761	+		GFF3333	0.51	-0.5
3,385,761	+		GFF3333	0.51	-0.1
3,385,766	+		GFF3333	0.51	-0.8
3,385,766	+		GFF3333	0.51	-1.7
3,385,769	-		GFF3333	0.51	+0.4
3,385,797	+		GFF3333	0.53	-0.6
3,385,825	+		GFF3333	0.56	-1.9
3,385,825	+		GFF3333	0.56	-1.1
3,385,828	-		GFF3333	0.56	-0.5
3,385,828	-		GFF3333	0.56	-2.0
3,385,831	+		GFF3333	0.56	-1.0
3,385,837	+		GFF3333	0.57	+1.0
3,385,837	+		GFF3333	0.57	+0.8
3,385,838	+		GFF3333	0.57	-1.8
3,385,839	-		GFF3333	0.57	-0.1
3,385,845	-		GFF3333	0.57	+0.3
3,385,846	-		GFF3333	0.57	-0.1
3,385,907	+		GFF3333	0.62	+0.0
3,385,910	-		GFF3333	0.62	-1.0
3,385,913	+		GFF3333	0.62	+0.2
3,385,915	-		GFF3333	0.63	+0.1
3,385,937	+		GFF3333	0.64	-1.0
3,385,937	+		GFF3333	0.64	-1.2
3,386,010	+		GFF3333	0.70	-1.4
3,386,015	+		GFF3333	0.70	-0.8
3,386,015	+		GFF3333	0.70	-0.4
3,386,015	+		GFF3333	0.70	+1.0
3,386,015	+		GFF3333	0.70	-1.4
3,386,020	+		GFF3333	0.71	-2.9
3,386,020	+		GFF3333	0.71	-0.4
3,386,020	+		GFF3333	0.71	-0.4
3,386,023	-		GFF3333	0.71	-0.5
3,386,023	-		GFF3333	0.71	+0.5
3,386,023	-		GFF3333	0.71	-0.5
3,386,032	+		GFF3333	0.72	-0.5
3,386,042	-		GFF3333	0.72	-0.4
3,386,061	-		GFF3333	0.74	-0.4
3,386,071	-		GFF3333	0.75	-1.0
3,386,073	-		GFF3333	0.75	-1.5
3,386,079	+		GFF3333	0.75	-1.7
3,386,086	+		GFF3333	0.76	-0.5
3,386,091	+		GFF3333	0.76	+0.6
3,386,099	-		GFF3333	0.77	+0.9
3,386,159	+		GFF3333	0.81	-0.0
3,386,174	+		GFF3333	0.83	-0.3
3,386,191	-		GFF3333	0.84	+1.6
3,386,206	+		GFF3333	0.85	+0.1
3,386,206	+		GFF3333	0.85	+0.2
3,386,206	+		GFF3333	0.85	-0.4
3,386,206	+		GFF3333	0.85	-0.4
3,386,206	+		GFF3333	0.85	+1.0
3,386,206	+		GFF3333	0.85	+1.3
3,386,206	+		GFF3333	0.85	-0.5
3,386,206	+		GFF3333	0.85	-0.5
3,386,206	+		GFF3333	0.85	-1.0
3,386,208	-		GFF3333	0.85	-0.1
3,386,208	-		GFF3333	0.85	-1.5
3,386,214	-		GFF3333	0.86	-2.0
3,386,214	-		GFF3333	0.86	-0.7
3,386,214	-		GFF3333	0.86	+1.2
3,386,214	-		GFF3333	0.86	-0.9
3,386,214	-		GFF3333	0.86	-1.2
3,386,214	-		GFF3333	0.86	-1.0
3,386,214	-		GFF3333	0.86	-0.4
3,386,214	-		GFF3333	0.86	+0.5
3,386,214	-		GFF3333	0.86	+0.2
3,386,214	-		GFF3333	0.86	+0.1
3,386,229	-		GFF3333	0.87	+0.6
3,386,234	-		GFF3333	0.87	+0.6
3,386,234	-		GFF3333	0.87	-0.0
3,386,237	+		GFF3333	0.87	-2.8
3,386,247	-		GFF3333	0.88	+0.2
3,386,343	+				-1.0
3,386,343	+				+0.8
3,386,343	+				-0.5
3,386,349	+				-0.9
3,386,349	+				+0.3
3,386,349	+				-1.0
3,386,357	-				-0.9
3,386,357	-				-0.3
3,386,357	-				+0.3
3,386,357	-				-0.2
3,386,357	-				-0.5
3,386,357	-				+1.4
3,386,359	+				-1.3
3,386,359	+				-0.5
3,386,366	+				-0.3
3,386,367	-				+0.5
3,386,367	-				+0.5
3,386,367	-				+0.5
3,386,378	-				-1.1
3,386,378	-				-0.9
3,386,412	+				-0.8
3,386,422	-				-0.2
3,386,427	+				+0.6
3,386,433	+				-0.2
3,386,433	+				-0.4
3,386,433	+				+0.7
3,386,434	-				-1.8
3,386,441	-				-1.8
3,386,441	-				-0.6
3,386,478	+				-0.8
3,386,502	+				-2.2
3,386,510	-				+1.0
3,386,539	+				-0.4
3,386,589	+		GFF3334	0.10	+0.2
3,386,713	+		GFF3334	0.23	-1.2
3,386,721	-		GFF3334	0.23	-0.7
3,386,755	-		GFF3334	0.27	-1.4
3,386,795	+		GFF3334	0.31	-0.7
3,386,853	-		GFF3334	0.37	-0.7
3,386,961	-		GFF3334	0.47	-0.8
3,387,051	+		GFF3334	0.56	-0.4
3,387,096	+		GFF3334	0.61	-1.1
3,387,100	-		GFF3334	0.61	-1.4
3,387,125	-		GFF3334	0.63	-0.5
3,387,238	-		GFF3334	0.75	-1.0
3,387,248	-		GFF3334	0.76	-0.8
3,387,279	+		GFF3334	0.79	-0.4
3,387,323	-		GFF3334	0.83	-0.4
3,387,333	-		GFF3334	0.84	-1.4
3,387,340	-		GFF3334	0.85	-0.7
3,387,494	+				-0.6
3,387,495	-				+0.1
3,387,511	+				-0.7
3,387,519	+				+0.0
3,387,519	+				-0.6
3,387,519	+				-0.4
3,387,528	-				+0.4
3,387,529	-				-0.2
3,387,547	+				+0.4
3,387,555	-				-1.8
3,387,572	+				-0.3
3,387,576	+		GFF3335	0.11	-1.3
3,387,606	-		GFF3335	0.18	-1.2
3,387,612	+		GFF3335	0.19	-0.4
3,387,613	+		GFF3335	0.20	+0.9
3,387,620	+		GFF3335	0.21	-0.4
3,387,628	-		GFF3335	0.23	-0.5
3,387,668	+		GFF3335	0.33	-0.0
3,387,685	+		GFF3335	0.37	-1.4
3,387,692	+		GFF3335	0.38	-0.9
3,387,693	-		GFF3335	0.39	+0.6
3,387,693	-		GFF3335	0.39	-1.2
3,387,697	+		GFF3335	0.39	-0.4
3,387,702	+		GFF3335	0.41	+1.0
3,387,702	+		GFF3335	0.41	-1.4
3,387,702	+		GFF3335	0.41	+0.9
3,387,702	+		GFF3335	0.41	+0.4
3,387,702	+		GFF3335	0.41	-0.6
3,387,702	+		GFF3335	0.41	-0.2
3,387,702	+		GFF3335	0.41	-1.0
3,387,702	+		GFF3335	0.41	+0.7
3,387,702	+		GFF3335	0.41	-0.7
3,387,702	+		GFF3335	0.41	+0.2
3,387,702	+		GFF3335	0.41	-1.4
3,387,702	+		GFF3335	0.41	+0.9
3,387,702	+		GFF3335	0.41	-0.1
3,387,705	-		GFF3335	0.41	+0.1
3,387,707	+		GFF3335	0.42	+1.3
3,387,708	-		GFF3335	0.42	+0.8
3,387,710	-		GFF3335	0.43	-1.4
3,387,710	-		GFF3335	0.43	-0.2
3,387,710	-		GFF3335	0.43	-1.3
3,387,710	-		GFF3335	0.43	-1.2
3,387,710	-		GFF3335	0.43	+0.6
3,387,712	+		GFF3335	0.43	+1.3
3,387,712	+		GFF3335	0.43	+0.1
3,387,718	+		GFF3335	0.44	+0.5
3,387,720	-		GFF3335	0.45	-1.3
3,387,720	-		GFF3335	0.45	+0.9
3,387,720	-		GFF3335	0.45	-0.7
3,387,737	+		GFF3335	0.49	-0.8
3,387,749	+		GFF3335	0.52	+0.4
3,387,764	+		GFF3335	0.55	+0.2
3,387,765	+		GFF3335	0.56	-0.2
3,387,784	+		GFF3335	0.60	-0.7
3,387,799	+		GFF3335	0.64	-1.8
3,387,814	-		GFF3335	0.67	-1.6
3,387,815	+		GFF3335	0.67	-1.2
3,387,833	-		GFF3335	0.72	-1.4
3,387,872	+		GFF3335	0.81	-1.5
3,387,872	+		GFF3335	0.81	-0.6
3,387,872	+		GFF3335	0.81	-0.1
3,387,900	-		GFF3335	0.87	-1.6
3,387,904	+		GFF3335	0.88	+0.9
3,387,904	+		GFF3335	0.88	-1.4
3,387,904	+		GFF3335	0.88	-0.9
3,387,904	+		GFF3335	0.88	+0.9
3,387,912	+				-0.1
3,387,912	+				-0.1
3,387,912	-				-0.4
3,387,945	+				+0.9
3,387,946	-				-0.8
3,387,953	-				-0.4
3,387,958	+				-1.4
3,387,964	+				+0.1
3,387,967	+				+0.5
3,387,975	+				+0.4
3,387,990	+				-1.2
3,387,990	+				-1.0
3,387,990	+				-1.1
3,387,995	+				-1.1
3,387,998	-				-1.7
3,388,074	+				-0.4
3,388,100	-				-0.6
3,388,133	+		GFF3336	0.10	-0.6
3,388,232	-		GFF3336	0.15	-0.4
3,388,293	+		GFF3336	0.19	-0.6
3,388,327	+		GFF3336	0.21	-0.7
3,388,382	+		GFF3336	0.24	-0.7
3,388,382	+		GFF3336	0.24	-0.6