Strain Fitness in Sphingobium sp. HT1-2 around GFF3261

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,315,919	-				-1.2
3,315,963	-				-1.4
3,316,027	+				+1.0
3,316,029	-				+1.5
3,316,035	-				-0.1
3,316,068	+				-2.3
3,316,073	+				-2.2
3,316,073	+				-0.4
3,316,076	-				+0.2
3,316,107	+		GFF3260	0.11	+0.1
3,316,115	-		GFF3260	0.11	-1.7
3,316,117	+		GFF3260	0.12	-1.7
3,316,119	-		GFF3260	0.12	-1.7
3,316,119	-		GFF3260	0.12	+0.7
3,316,119	-		GFF3260	0.12	-0.4
3,316,167	+		GFF3260	0.17	+0.1
3,316,175	-		GFF3260	0.18	-1.3
3,316,175	-		GFF3260	0.18	+0.6
3,316,195	+		GFF3260	0.21	-0.4
3,316,195	+		GFF3260	0.21	+0.2
3,316,195	+		GFF3260	0.21	+1.1
3,316,195	+		GFF3260	0.21	+0.1
3,316,203	-		GFF3260	0.21	+1.2
3,316,258	-		GFF3260	0.28	-0.4
3,316,261	+		GFF3260	0.28	+0.5
3,316,282	+		GFF3260	0.30	-0.6
3,316,290	-		GFF3260	0.31	-0.1
3,316,295	-		GFF3260	0.32	+0.3
3,316,295	-		GFF3260	0.32	-1.5
3,316,300	+		GFF3260	0.32	+0.3
3,316,318	+		GFF3260	0.34	-1.0
3,316,318	+		GFF3260	0.34	+0.3
3,316,318	+		GFF3260	0.34	-0.0
3,316,318	+		GFF3260	0.34	-0.8
3,316,321	-		GFF3260	0.35	-0.1
3,316,345	+		GFF3260	0.38	+0.0
3,316,358	+		GFF3260	0.39	-0.7
3,316,398	+		GFF3260	0.44	-1.0
3,316,406	-		GFF3260	0.44	-0.8
3,316,423	-		GFF3260	0.46	-1.5
3,316,448	+		GFF3260	0.49	-0.8
3,316,451	-		GFF3260	0.50	+0.3
3,316,456	+		GFF3260	0.50	+0.9
3,316,456	+		GFF3260	0.50	+0.7
3,316,456	+		GFF3260	0.50	-0.6
3,316,456	+		GFF3260	0.50	-0.8
3,316,456	+		GFF3260	0.50	-1.0
3,316,456	+		GFF3260	0.50	+0.5
3,316,456	+		GFF3260	0.50	-0.0
3,316,456	+		GFF3260	0.50	+0.4
3,316,456	+		GFF3260	0.50	+0.3
3,316,456	+		GFF3260	0.50	-1.1
3,316,456	+		GFF3260	0.50	-0.5
3,316,456	+		GFF3260	0.50	-0.5
3,316,461	+		GFF3260	0.51	-0.8
3,316,461	+		GFF3260	0.51	-0.1
3,316,461	+		GFF3260	0.51	+0.5
3,316,464	-		GFF3260	0.51	+0.1
3,316,464	-		GFF3260	0.51	-0.4
3,316,464	-		GFF3260	0.51	-0.3
3,316,464	-		GFF3260	0.51	-0.1
3,316,464	-		GFF3260	0.51	-0.5
3,316,464	-		GFF3260	0.51	-1.6
3,316,464	-		GFF3260	0.51	-1.6
3,316,464	-		GFF3260	0.51	-0.4
3,316,464	-		GFF3260	0.51	-1.3
3,316,464	-		GFF3260	0.51	-0.7
3,316,464	-		GFF3260	0.51	+0.0
3,316,466	+		GFF3260	0.51	+0.2
3,316,469	-		GFF3260	0.52	-0.6
3,316,474	-		GFF3260	0.52	-1.3
3,316,478	+		GFF3260	0.53	-0.9
3,316,478	+		GFF3260	0.53	-0.9
3,316,478	+		GFF3260	0.53	+0.5
3,316,478	+		GFF3260	0.53	+0.1
3,316,478	+		GFF3260	0.53	-0.6
3,316,478	+		GFF3260	0.53	-0.7
3,316,486	-		GFF3260	0.54	-0.2
3,316,486	-		GFF3260	0.54	-0.6
3,316,486	-		GFF3260	0.54	-0.2
3,316,486	-		GFF3260	0.54	-0.6
3,316,486	-		GFF3260	0.54	-1.6
3,316,486	-		GFF3260	0.54	-1.2
3,316,488	+		GFF3260	0.54	+0.6
3,316,492	+		GFF3260	0.54	-0.9
3,316,493	+		GFF3260	0.54	-1.1
3,316,493	+		GFF3260	0.54	-2.2
3,316,500	-		GFF3260	0.55	-0.8
3,316,501	-		GFF3260	0.55	+0.5
3,316,514	+		GFF3260	0.57	-1.0
3,316,514	+		GFF3260	0.57	+0.1
3,316,514	+		GFF3260	0.57	-2.0
3,316,514	+		GFF3260	0.57	-0.3
3,316,514	+		GFF3260	0.57	-0.9
3,316,514	+		GFF3260	0.57	-1.5
3,316,514	+		GFF3260	0.57	-1.6
3,316,514	+		GFF3260	0.57	+0.5
3,316,514	+		GFF3260	0.57	-1.1
3,316,514	+		GFF3260	0.57	-0.9
3,316,514	+		GFF3260	0.57	-1.3
3,316,514	+		GFF3260	0.57	+0.1
3,316,514	+		GFF3260	0.57	-1.6
3,316,514	+		GFF3260	0.57	+1.4
3,316,514	+		GFF3260	0.57	-1.4
3,316,514	+		GFF3260	0.57	-0.7
3,316,522	-		GFF3260	0.58	-0.0
3,316,522	-		GFF3260	0.58	+0.7
3,316,522	-		GFF3260	0.58	-1.6
3,316,522	-		GFF3260	0.58	+0.9
3,316,522	-		GFF3260	0.58	-1.3
3,316,522	-		GFF3260	0.58	+0.3
3,316,522	-		GFF3260	0.58	+0.6
3,316,522	-		GFF3260	0.58	+0.7
3,316,522	-		GFF3260	0.58	-1.5
3,316,522	-		GFF3260	0.58	-0.1
3,316,522	-		GFF3260	0.58	-1.0
3,316,522	-		GFF3260	0.58	-0.0
3,316,522	-		GFF3260	0.58	+0.4
3,316,522	-		GFF3260	0.58	-1.6
3,316,522	-		GFF3260	0.58	-0.3
3,316,522	-		GFF3260	0.58	-1.3
3,316,522	-		GFF3260	0.58	+0.5
3,316,522	-		GFF3260	0.58	-0.0
3,316,522	-		GFF3260	0.58	+0.1
3,316,522	-		GFF3260	0.58	-0.0
3,316,522	-		GFF3260	0.58	+0.5
3,316,522	-		GFF3260	0.58	+0.3
3,316,522	-		GFF3260	0.58	-0.2
3,316,522	-		GFF3260	0.58	-0.0
3,316,522	-		GFF3260	0.58	-1.3
3,316,522	-		GFF3260	0.58	+0.3
3,316,525	+		GFF3260	0.58	+0.8
3,316,526	-		GFF3260	0.58	+0.7
3,316,528	+		GFF3260	0.58	-1.0
3,316,528	+		GFF3260	0.58	-1.3
3,316,536	-		GFF3260	0.59	+0.5
3,316,538	+		GFF3260	0.59	+0.5
3,316,538	+		GFF3260	0.59	+0.1
3,316,546	-		GFF3260	0.60	-0.0
3,316,546	-		GFF3260	0.60	-2.3
3,316,559	+		GFF3260	0.62	+1.2
3,316,565	-		GFF3260	0.62	+0.1
3,316,592	-		GFF3260	0.66	+0.5
3,316,596	+		GFF3260	0.66	-2.4
3,316,596	+		GFF3260	0.66	-0.8
3,316,604	-		GFF3260	0.67	+0.6
3,316,604	-		GFF3260	0.67	+0.4
3,316,604	-		GFF3260	0.67	-1.2
3,316,604	-		GFF3260	0.67	+0.4
3,316,604	-		GFF3260	0.67	-2.0
3,316,650	+		GFF3260	0.72	-0.1
3,316,655	+		GFF3260	0.73	+0.4
3,316,655	+		GFF3260	0.73	-0.1
3,316,655	+		GFF3260	0.73	-0.3
3,316,655	+		GFF3260	0.73	-0.5
3,316,655	+		GFF3260	0.73	-1.2
3,316,655	+		GFF3260	0.73	-1.3
3,316,655	+		GFF3260	0.73	-1.0
3,316,655	+		GFF3260	0.73	-0.7
3,316,655	+		GFF3260	0.73	-0.8
3,316,655	+		GFF3260	0.73	-2.5
3,316,655	+		GFF3260	0.73	-0.1
3,316,663	-		GFF3260	0.74	+0.5
3,316,663	-		GFF3260	0.74	-0.5
3,316,663	-		GFF3260	0.74	-0.8
3,316,663	-		GFF3260	0.74	-2.0
3,316,663	-		GFF3260	0.74	-1.1
3,316,663	-		GFF3260	0.74	+0.2
3,316,663	-		GFF3260	0.74	-0.2
3,316,663	-		GFF3260	0.74	-0.8
3,316,665	+		GFF3260	0.74	+0.3
3,316,675	+		GFF3260	0.75	-1.1
3,316,675	+		GFF3260	0.75	+0.9
3,316,683	-		GFF3260	0.76	-0.7
3,316,683	-		GFF3260	0.76	-0.5
3,316,683	-		GFF3260	0.76	-0.0
3,316,683	-		GFF3260	0.76	-1.5
3,316,683	-		GFF3260	0.76	+0.1
3,316,685	+		GFF3260	0.76	-1.2
3,316,702	+		GFF3260	0.78	+0.2
3,316,710	+		GFF3260	0.79	-1.2
3,316,710	-		GFF3260	0.79	-0.6
3,316,712	+		GFF3260	0.79	-0.7
3,316,717	+		GFF3260	0.80	-0.8
3,316,717	+		GFF3260	0.80	-2.3
3,316,718	-		GFF3260	0.80	-0.9
3,316,718	-		GFF3260	0.80	+1.5
3,316,725	-		GFF3260	0.81	-2.0
3,316,725	-		GFF3260	0.81	-1.2
3,316,725	-		GFF3260	0.81	+0.9
3,316,725	-		GFF3260	0.81	-1.0
3,316,725	-		GFF3260	0.81	-1.8
3,316,735	-		GFF3260	0.82	-0.5
3,316,753	+		GFF3260	0.84	-0.5
3,316,753	+		GFF3260	0.84	-1.0
3,316,761	-		GFF3260	0.85	+1.1
3,316,761	-		GFF3260	0.85	-1.5
3,316,794	+		GFF3260	0.88	-0.0
3,316,795	+		GFF3260	0.89	+0.7
3,316,800	+		GFF3260	0.89	-0.8
3,316,889	+				-0.5
3,316,889	+				+1.0
3,316,895	+				-0.0
3,316,897	-				-0.0
3,316,904	-				-0.7
3,317,375	+		GFF3261	0.71	-0.5
3,317,383	-		GFF3261	0.72	-1.0
3,317,419	-		GFF3261	0.77	-1.0
3,317,489	+		GFF3261	0.88	+1.3
3,317,495	+		GFF3261	0.89	+0.3
3,317,495	+		GFF3261	0.89	-1.2
3,317,495	+		GFF3261	0.89	+1.6
3,317,495	+		GFF3261	0.89	-0.7
3,317,495	+		GFF3261	0.89	+0.7
3,317,495	+		GFF3261	0.89	-0.5
3,317,495	+		GFF3261	0.89	-1.5
3,317,495	+		GFF3261	0.89	-0.3
3,317,495	+		GFF3261	0.89	-0.9
3,317,495	+		GFF3261	0.89	+0.2
3,317,495	+		GFF3261	0.89	-1.7
3,317,495	+		GFF3261	0.89	-0.0
3,317,495	+		GFF3261	0.89	+0.7
3,317,495	+		GFF3261	0.89	+0.3
3,317,495	+		GFF3261	0.89	-0.1
3,317,503	-		GFF3261	0.90	-1.5
3,317,503	-		GFF3261	0.90	+2.0
3,317,503	-		GFF3261	0.90	-1.1
3,317,503	-		GFF3261	0.90	-0.6
3,317,503	-		GFF3261	0.90	+0.8
3,317,503	-		GFF3261	0.90	-1.7
3,317,503	-		GFF3261	0.90	-0.5
3,317,503	-		GFF3261	0.90	+0.8
3,317,521	+				-0.7
3,317,529	-				+0.2
3,317,537	-				-0.9
3,317,552	+				-0.5
3,317,552	+				-0.2
3,317,552	+				-1.6
3,317,552	+				+0.7
3,317,552	+				-1.6
3,317,557	+				-0.0
3,317,557	+				-1.3
3,317,557	+				-0.9
3,317,557	+				-1.4
3,317,557	+				-0.4
3,317,560	-				-0.8
3,317,560	-				+0.7
3,317,565	-				-2.8
3,317,565	-				+0.1
3,317,565	-				-0.3
3,317,580	-				-1.9
3,317,623	-				-1.6
3,317,652	-				-0.9
3,317,652	-				-0.0
3,317,733	-		GFF3262	0.34	-0.5
3,317,740	+		GFF3262	0.36	+1.1
3,317,750	+		GFF3262	0.40	+1.1
3,317,750	+		GFF3262	0.40	-1.4
3,317,750	+		GFF3262	0.40	+1.8
3,317,750	+		GFF3262	0.40	+1.7
3,317,773	-		GFF3262	0.49	-0.3
3,317,773	-		GFF3262	0.49	-0.9
3,317,777	+		GFF3262	0.51	+0.8
3,317,782	+		GFF3262	0.53	+0.6
3,317,797	+		GFF3262	0.59	-0.3
3,317,797	+		GFF3262	0.59	-0.1
3,317,797	+		GFF3262	0.59	+1.1
3,317,797	+		GFF3262	0.59	-0.8
3,317,826	-		GFF3262	0.70	+0.1
3,317,828	+		GFF3262	0.71	+0.4
3,317,870	+		GFF3262	0.87	+1.1
3,317,870	+		GFF3262	0.87	+2.5
3,317,870	+		GFF3262	0.87	-0.7
3,317,870	+		GFF3262	0.87	+1.1
3,317,870	+		GFF3262	0.87	-0.7
3,317,870	+		GFF3262	0.87	+0.2
3,317,873	-		GFF3262	0.88	+1.0
3,317,878	-				-0.7
3,317,878	-				+1.2
3,317,878	-				+1.0
3,317,878	-				-0.5
3,317,878	-				-0.1
3,317,892	+				+0.2
3,317,905	-				-0.5
3,317,905	-				-1.8
3,317,907	+				+0.4
3,317,915	-				-0.5
3,317,952	+				+0.5
3,317,954	+				+0.5
3,317,957	-				-0.7
3,317,959	+				+1.5
3,317,962	-				+0.2
3,317,966	+				-0.1
3,317,967	-				-0.0
3,317,967	-				-1.3
3,317,967	-				+1.4
3,317,967	-				-1.3
3,317,979	-				+0.4
3,318,000	-				-0.4
3,318,027	-				-0.7
3,318,067	+				-0.6
3,318,074	-				-0.1
3,318,076	+				-0.8
3,318,076	+				-1.0
3,318,084	+				+2.2
3,318,084	+				-0.5
3,318,084	+				+0.2
3,318,091	-		GFF3263	0.10	+0.5
3,318,092	-		GFF3263	0.10	+1.0
3,318,092	-		GFF3263	0.10	+0.1
3,318,100	+		GFF3263	0.11	+0.3
3,318,105	+		GFF3263	0.11	+0.5
3,318,122	+		GFF3263	0.12	+0.1
3,318,126	-		GFF3263	0.12	+1.2
3,318,129	+		GFF3263	0.12	-0.3
3,318,129	+		GFF3263	0.12	-0.9
3,318,153	+		GFF3263	0.14	-0.8
3,318,153	+		GFF3263	0.14	-1.1
3,318,153	+		GFF3263	0.14	-1.1
3,318,209	+		GFF3263	0.17	+0.7
3,318,209	+		GFF3263	0.17	-0.6
3,318,209	+		GFF3263	0.17	+0.1
3,318,217	-		GFF3263	0.17	-1.2
3,318,217	-		GFF3263	0.17	+0.4
3,318,237	+		GFF3263	0.18	-0.9
3,318,242	+		GFF3263	0.18	-0.2
3,318,245	-		GFF3263	0.19	-2.5
3,318,245	-		GFF3263	0.19	+0.1
3,318,250	-		GFF3263	0.19	+1.0
3,318,252	+		GFF3263	0.19	+0.5
3,318,260	-		GFF3263	0.19	+0.4
3,318,265	+		GFF3263	0.20	+1.0
3,318,265	+		GFF3263	0.20	-1.0
3,318,265	+		GFF3263	0.20	-0.3
3,318,265	+		GFF3263	0.20	-0.1
3,318,273	-		GFF3263	0.20	-1.3
3,318,273	-		GFF3263	0.20	+0.3
3,318,273	-		GFF3263	0.20	-0.2
3,318,294	+		GFF3263	0.21	-0.8
3,318,302	-		GFF3263	0.22	-1.0
3,318,327	+		GFF3263	0.23	-1.2
3,318,336	+		GFF3263	0.23	-1.8
3,318,341	+		GFF3263	0.24	-0.0
3,318,344	-		GFF3263	0.24	-2.1
3,318,351	+		GFF3263	0.24	-0.7
3,318,351	-		GFF3263	0.24	-2.0
3,318,354	-		GFF3263	0.24	-1.9
3,318,372	+		GFF3263	0.25	-0.2
3,318,372	+		GFF3263	0.25	-0.2
3,318,372	+		GFF3263	0.25	-0.7
3,318,380	-		GFF3263	0.26	-0.8
3,318,380	-		GFF3263	0.26	+0.2
3,318,380	-		GFF3263	0.26	-0.8
3,318,380	-		GFF3263	0.26	-0.2
3,318,382	+		GFF3263	0.26	-0.8
3,318,382	+		GFF3263	0.26	+0.2
3,318,382	+		GFF3263	0.26	+1.2
3,318,382	+		GFF3263	0.26	-0.8
3,318,390	-		GFF3263	0.26	-0.2
3,318,390	-		GFF3263	0.26	+0.2
3,318,390	-		GFF3263	0.26	-0.6
3,318,390	-		GFF3263	0.26	-0.6
3,318,401	+		GFF3263	0.27	-1.0
3,318,401	+		GFF3263	0.27	-1.3
3,318,426	-		GFF3263	0.28	+0.1
3,318,430	-		GFF3263	0.29	+0.6
3,318,529	+		GFF3263	0.34	-2.4
3,318,531	+		GFF3263	0.34	+0.8
3,318,536	+		GFF3263	0.34	+1.9
3,318,549	-		GFF3263	0.35	-1.7
3,318,563	+		GFF3263	0.36	-2.1
3,318,563	+		GFF3263	0.36	-0.6
3,318,570	+		GFF3263	0.36	+1.6