Strain Fitness in Sphingobium sp. HT1-2 around GFF3241

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,296,277	+				-1.2
3,296,277	+				+0.2
3,296,277	-				+0.2
3,296,283	-				-1.1
3,296,285	-				-0.8
3,296,289	-				+0.7
3,296,347	+				-2.1
3,296,361	+				+1.0
3,296,383	+				-1.0
3,296,398	+				+0.6
3,296,437	+				-0.7
3,296,445	-				-1.1
3,296,445	-				+0.4
3,296,449	+				-0.5
3,296,457	-				-1.0
3,296,899	-				-0.5
3,296,901	+				-1.0
3,296,904	-				-1.2
3,296,909	-				-1.0
3,296,930	-				-1.5
3,296,930	-				+0.9
3,296,930	-				+0.1
3,296,930	-				+0.5
3,296,932	+				+0.8
3,296,932	+				-1.1
3,296,932	+				-0.7
3,296,940	-				-0.6
3,297,001	-				-0.6
3,297,003	-				-1.3
3,297,012	+				-1.4
3,297,050	+				-1.4
3,297,058	-				-2.2
3,297,065	-				-0.7
3,297,067	-				-0.5
3,297,092	-		GFF3241	0.11	-1.2
3,297,098	+		GFF3241	0.11	-1.7
3,297,098	+		GFF3241	0.11	-0.7
3,297,127	+		GFF3241	0.13	-2.0
3,297,135	+		GFF3241	0.14	-0.9
3,297,141	+		GFF3241	0.14	-1.2
3,297,142	-		GFF3241	0.15	-1.2
3,297,149	-		GFF3241	0.15	-0.7
3,297,164	-		GFF3241	0.16	-1.0
3,297,205	+		GFF3241	0.19	-0.9
3,297,208	+		GFF3241	0.20	-1.9
3,297,208	+		GFF3241	0.20	-0.8
3,297,208	+		GFF3241	0.20	-1.1
3,297,208	+		GFF3241	0.20	-1.4
3,297,216	-		GFF3241	0.20	-1.0
3,297,223	+		GFF3241	0.21	-1.2
3,297,226	-		GFF3241	0.21	-1.9
3,297,239	+		GFF3241	0.22	-1.2
3,297,304	-		GFF3241	0.27	-0.6
3,297,347	-		GFF3241	0.30	-2.1
3,297,357	-		GFF3241	0.31	-3.1
3,297,362	-		GFF3241	0.32	-1.2
3,297,389	-		GFF3241	0.34	-2.6
3,297,395	+		GFF3241	0.34	-1.5
3,297,395	+		GFF3241	0.34	-0.6
3,297,395	+		GFF3241	0.34	-1.2
3,297,427	+		GFF3241	0.37	-1.5
3,297,466	-		GFF3241	0.40	-0.7
3,297,468	+		GFF3241	0.40	-0.9
3,297,476	-		GFF3241	0.40	-1.2
3,297,477	-		GFF3241	0.41	-1.7
3,297,487	+		GFF3241	0.41	-0.7
3,297,501	+		GFF3241	0.42	-0.7
3,297,509	-		GFF3241	0.43	-1.1
3,297,509	-		GFF3241	0.43	-2.2
3,297,509	-		GFF3241	0.43	-1.2
3,297,548	+		GFF3241	0.46	-1.0
3,297,552	+		GFF3241	0.46	-2.0
3,297,553	-		GFF3241	0.46	-1.3
3,297,556	-		GFF3241	0.47	-0.7
3,297,565	+		GFF3241	0.47	-1.2
3,297,565	+		GFF3241	0.47	-1.1
3,297,565	+		GFF3241	0.47	-0.5
3,297,565	+		GFF3241	0.47	-1.5
3,297,565	+		GFF3241	0.47	-0.5
3,297,565	+		GFF3241	0.47	-2.1
3,297,565	+		GFF3241	0.47	-1.4
3,297,570	-		GFF3241	0.48	-1.7
3,297,570	-		GFF3241	0.48	-0.5
3,297,572	+		GFF3241	0.48	-0.5
3,297,573	-		GFF3241	0.48	-0.8
3,297,573	-		GFF3241	0.48	-1.6
3,297,579	-		GFF3241	0.48	-0.7
3,297,600	-		GFF3241	0.50	-1.9
3,297,600	-		GFF3241	0.50	-2.2
3,297,628	+		GFF3241	0.52	-1.2
3,297,628	+		GFF3241	0.52	-2.4
3,297,636	-		GFF3241	0.53	-1.0
3,297,636	-		GFF3241	0.53	-2.5
3,297,641	-		GFF3241	0.53	-1.1
3,297,641	-		GFF3241	0.53	-0.8
3,297,641	-		GFF3241	0.53	-0.6
3,297,654	-		GFF3241	0.54	-2.1
3,297,654	-		GFF3241	0.54	-1.2
3,297,654	-		GFF3241	0.54	-2.1
3,297,659	-		GFF3241	0.55	-0.5
3,297,659	-		GFF3241	0.55	-1.4
3,297,661	+		GFF3241	0.55	-2.3
3,297,661	+		GFF3241	0.55	-1.8
3,297,669	-		GFF3241	0.55	-1.4
3,297,669	-		GFF3241	0.55	-1.0
3,297,711	-		GFF3241	0.59	-2.8
3,297,712	-		GFF3241	0.59	-0.5
3,297,720	+		GFF3241	0.59	-0.8
3,297,720	+		GFF3241	0.59	-0.7
3,297,746	-		GFF3241	0.61	-1.1
3,297,765	-		GFF3241	0.63	-1.2
3,297,768	+		GFF3241	0.63	-0.9
3,297,769	+		GFF3241	0.63	-0.8
3,297,777	-		GFF3241	0.64	-1.9
3,297,784	+		GFF3241	0.64	-1.3
3,297,784	+		GFF3241	0.64	-1.8
3,297,790	+		GFF3241	0.65	-0.7
3,297,798	-		GFF3241	0.66	-2.5
3,297,805	+		GFF3241	0.66	-0.9
3,297,805	+		GFF3241	0.66	-1.0
3,297,818	-		GFF3241	0.67	-0.6
3,297,833	-		GFF3241	0.68	-1.2
3,297,833	-		GFF3241	0.68	+0.5
3,297,833	-		GFF3241	0.68	-0.6
3,297,860	-		GFF3241	0.70	-1.1
3,297,872	+		GFF3241	0.71	+0.5
3,297,877	+		GFF3241	0.72	-2.3
3,297,893	+		GFF3241	0.73	-0.8
3,297,902	-		GFF3241	0.74	-0.8
3,297,907	-		GFF3241	0.74	-1.1
3,297,921	+		GFF3241	0.75	-0.9
3,297,924	+		GFF3241	0.75	-1.5
3,297,926	+		GFF3241	0.75	+0.2
3,297,926	+		GFF3241	0.75	-0.5
3,297,929	-		GFF3241	0.76	-0.6
3,297,932	-		GFF3241	0.76	-1.1
3,297,934	-		GFF3241	0.76	-0.9
3,297,952	+		GFF3241	0.77	-1.1
3,297,974	+		GFF3241	0.79	-1.5
3,297,987	+		GFF3241	0.80	-1.5
3,297,987	+		GFF3241	0.80	-1.2
3,297,987	+		GFF3241	0.80	-0.8
3,297,994	+		GFF3241	0.81	-1.9
3,297,994	+		GFF3241	0.81	-1.1
3,297,994	+		GFF3241	0.81	-1.6
3,297,995	-		GFF3241	0.81	-1.5
3,297,995	-		GFF3241	0.81	-1.1
3,297,995	-		GFF3241	0.81	-0.8
3,297,995	-		GFF3241	0.81	-1.0
3,298,002	-		GFF3241	0.81	-0.6
3,298,002	-		GFF3241	0.81	-1.5
3,298,007	-		GFF3241	0.82	-1.7
3,298,056	+		GFF3241	0.86	-0.6
3,298,078	-		GFF3241	0.87	-1.7
3,298,091	-		GFF3241	0.88	-1.9
3,298,097	+		GFF3241	0.89	-0.9
3,298,123	+				-1.0
3,298,123	+				-2.5
3,298,131	-				-2.3
3,298,133	-				-1.6
3,298,135	+				-0.9
3,298,135	+				+0.4
3,298,135	+				-1.1
3,298,143	-				-1.2
3,298,143	-				-1.8
3,298,143	-				-1.8
3,298,155	+				-1.3
3,298,190	-				-0.5
3,298,228	+				-1.1
3,298,248	+				-1.1
3,298,256	+				-0.9
3,298,256	-				-0.7
3,298,256	-				-2.1
3,298,257	-				-0.4
3,298,268	+				-0.9
3,298,268	+				-1.0
3,298,268	+				-1.1
3,298,268	+				-1.1
3,298,268	+				-0.6
3,298,268	+				-1.2
3,298,276	-				-1.1
3,298,276	-				-3.1
3,298,276	-				-1.3
3,298,276	-				-1.6
3,298,303	+		GFF3242	0.11	-0.6
3,298,303	+		GFF3242	0.11	+1.4
3,298,311	-		GFF3242	0.12	-1.5
3,298,311	-		GFF3242	0.12	-0.8
3,298,323	+		GFF3242	0.14	-1.2
3,298,343	+		GFF3242	0.17	-0.7
3,298,366	-		GFF3242	0.20	-0.8
3,298,376	+		GFF3242	0.22	-0.8
3,298,376	+		GFF3242	0.22	-1.8
3,298,399	-		GFF3242	0.25	-1.6
3,298,433	-		GFF3242	0.30	-1.9
3,298,544	-		GFF3242	0.47	-0.6
3,298,551	-		GFF3242	0.48	-1.0
3,298,551	-		GFF3242	0.48	-0.6
3,298,565	+		GFF3242	0.50	-1.9
3,298,618	-		GFF3242	0.58	-0.7
3,298,620	-		GFF3242	0.59	-1.4
3,298,620	-		GFF3242	0.59	-0.9
3,298,662	+		GFF3242	0.65	-0.6
3,298,667	+		GFF3242	0.66	-0.6
3,298,670	-		GFF3242	0.66	-1.6
3,298,670	-		GFF3242	0.66	-1.4
3,298,676	+		GFF3242	0.67	-1.6
3,298,676	+		GFF3242	0.67	-3.6
3,298,681	+		GFF3242	0.68	-0.9
3,298,681	+		GFF3242	0.68	-0.2
3,298,681	+		GFF3242	0.68	-1.4
3,298,684	-		GFF3242	0.68	-0.6
3,298,689	-		GFF3242	0.69	-1.5
3,298,689	-		GFF3242	0.69	-3.7
3,298,689	-		GFF3242	0.69	-1.5
3,298,689	-		GFF3242	0.69	-1.4
3,298,689	-		GFF3242	0.69	-1.2
3,298,689	-		GFF3242	0.69	-2.5
3,298,694	-		GFF3242	0.70	-1.7
3,298,694	-		GFF3242	0.70	-0.7
3,298,701	-		GFF3242	0.71	-1.4
3,298,716	+		GFF3242	0.73	-1.1
3,298,716	+		GFF3242	0.73	-0.8
3,298,716	+		GFF3242	0.73	-0.8
3,298,724	-		GFF3242	0.74	-0.7
3,298,773	+		GFF3242	0.82	-1.1
3,298,815	-		GFF3242	0.88	-1.7
3,298,829	+				-1.5
3,298,829	+				+0.8
3,298,842	-				-2.0
3,298,845	+				-2.0
3,298,853	+				-1.5
3,298,860	-				-2.4
3,298,897	-				-0.7
3,298,897	-				-1.7
3,298,911	-				-1.5
3,298,972	-				-1.2
3,298,979	+				-0.6
3,298,979	+				+1.3
3,298,981	+				+0.7
3,298,987	-				-0.2
3,298,987	-				-0.5
3,298,987	-				-0.7
3,298,989	-				-2.0
3,298,994	+				-0.6
3,299,022	-				+0.3
3,299,034	-				-0.5
3,299,055	+				+0.0
3,299,063	-				-1.0
3,299,063	-				+0.0
3,299,076	+				-0.2
3,299,094	-				-1.4
3,299,098	+				-0.5
3,299,128	-		GFF3243	0.11	-1.1
3,299,134	-		GFF3243	0.12	-0.6
3,299,135	+		GFF3243	0.12	+1.5
3,299,154	+		GFF3243	0.13	+0.4
3,299,167	-		GFF3243	0.14	+0.1
3,299,174	+		GFF3243	0.15	-1.2
3,299,183	-		GFF3243	0.15	-0.4