Strain Fitness in Sphingobium sp. HT1-2 around GFF2855

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,910,387	-		GFF2853	0.62	-0.4
2,910,423	-		GFF2853	0.64	+0.9
2,910,424	-		GFF2853	0.64	-0.5
2,910,429	-		GFF2853	0.65	-1.2
2,910,442	-		GFF2853	0.65	-1.6
2,910,478	-		GFF2853	0.68	+0.1
2,910,483	-		GFF2853	0.68	+0.0
2,910,489	-		GFF2853	0.69	-0.3
2,910,533	-		GFF2853	0.72	+1.6
2,910,576	-		GFF2853	0.74	-0.1
2,910,576	-		GFF2853	0.74	+1.9
2,910,602	+		GFF2853	0.76	+0.6
2,910,613	+		GFF2853	0.77	-0.1
2,910,618	+		GFF2853	0.77	-0.7
2,910,623	+		GFF2853	0.77	-0.9
2,910,713	+		GFF2853	0.83	-0.6
2,910,733	+		GFF2853	0.85	-0.8
2,910,781	-		GFF2853	0.88	-1.1
2,910,790	+		GFF2853	0.89	+1.5
2,910,803	-		GFF2853	0.89	-0.9
2,910,826	+				-0.9
2,910,826	+				-0.1
2,910,826	+				+0.6
2,910,852	+				+1.0
2,910,852	+				-0.0
2,910,852	+				+0.1
2,910,852	+				+0.2
2,910,852	+				+0.9
2,910,855	-				+0.6
2,910,857	+				+0.5
2,910,860	-				+0.5
2,910,860	-				-0.8
2,910,860	-				-1.8
2,910,860	-				+0.6
2,910,865	-				-0.1
2,910,870	-				-3.0
2,910,886	-				+1.0
2,910,895	+				+1.0
2,910,903	+				+1.7
2,910,903	-				-1.4
2,910,903	-				-0.5
2,910,909	+				-1.1
2,910,919	+				+0.6
2,910,942	+				-0.2
2,910,955	+				-0.7
2,911,006	+		GFF2854	0.11	-0.0
2,911,014	-		GFF2854	0.13	-0.9
2,911,018	+		GFF2854	0.14	-0.8
2,911,039	+		GFF2854	0.19	-0.0
2,911,085	-		GFF2854	0.29	+1.8
2,911,095	+		GFF2854	0.32	+0.8
2,911,188	+		GFF2854	0.53	+0.2
2,911,189	+		GFF2854	0.54	+1.0
2,911,189	+		GFF2854	0.54	+0.6
2,911,197	-		GFF2854	0.55	-1.7
2,911,245	+		GFF2854	0.67	+2.0
2,911,246	-		GFF2854	0.67	+0.5
2,911,264	-		GFF2854	0.71	-0.1
2,911,279	-		GFF2854	0.75	+0.2
2,911,280	+		GFF2854	0.75	-0.9
2,911,288	-		GFF2854	0.77	+1.5
2,911,295	+		GFF2854	0.78	-0.6
2,911,303	-		GFF2854	0.80	+2.6
2,911,319	-		GFF2854	0.84	-0.5
2,911,330	+		GFF2854	0.86	+0.9
2,911,333	-		GFF2854	0.87	+0.9
2,911,338	-		GFF2854	0.88	+0.6
2,911,343	-		GFF2854	0.90	+0.9
2,911,397	+				-0.4
2,911,403	+				-0.9
2,911,405	-				+0.1
2,911,405	-				+1.3
2,911,408	+				+1.0
2,911,421	-				-0.4
2,911,464	-				+0.0
2,911,509	+		GFF2855	0.14	-0.3
2,911,514	+		GFF2855	0.14	+0.3
2,911,514	+		GFF2855	0.14	+0.8
2,911,520	+		GFF2855	0.15	+0.3
2,911,568	-		GFF2855	0.20	-1.5
2,911,570	-		GFF2855	0.20	-1.5
2,911,570	-		GFF2855	0.20	+2.0
2,911,580	-		GFF2855	0.22	-0.3
2,911,618	-		GFF2855	0.26	+0.7
2,911,626	-		GFF2855	0.27	-1.5
2,911,627	-		GFF2855	0.27	+0.9
2,911,702	+		GFF2855	0.35	+0.1
2,911,729	-		GFF2855	0.38	-0.3
2,911,778	-		GFF2855	0.43	-0.0
2,911,779	-		GFF2855	0.43	-0.1
2,911,780	+		GFF2855	0.44	-0.1
2,911,780	+		GFF2855	0.44	-1.9
2,911,780	+		GFF2855	0.44	-0.0
2,911,780	+		GFF2855	0.44	-0.8
2,911,780	+		GFF2855	0.44	-0.3
2,911,780	-		GFF2855	0.44	-0.5
2,911,780	-		GFF2855	0.44	+2.5
2,911,788	-		GFF2855	0.44	+1.1
2,911,835	+		GFF2855	0.50	+0.3
2,911,844	+		GFF2855	0.51	+0.2
2,911,849	+		GFF2855	0.51	-1.7
2,911,849	+		GFF2855	0.51	-0.0
2,911,854	+		GFF2855	0.52	+0.4
2,911,854	+		GFF2855	0.52	-0.0
2,911,859	+		GFF2855	0.52	+0.1
2,911,880	+		GFF2855	0.55	+1.1
2,911,888	-		GFF2855	0.55	-1.9
2,911,903	+		GFF2855	0.57	-1.2
2,911,911	-		GFF2855	0.58	+0.6
2,911,911	-		GFF2855	0.58	+0.5
2,911,911	-		GFF2855	0.58	-1.1
2,911,926	-		GFF2855	0.60	-0.6
2,911,934	+		GFF2855	0.61	+0.5
2,911,969	+		GFF2855	0.64	-0.9
2,912,010	-		GFF2855	0.69	-0.1
2,912,016	-		GFF2855	0.70	-0.2
2,912,016	-		GFF2855	0.70	-0.8
2,912,038	-		GFF2855	0.72	-2.9
2,912,072	+		GFF2855	0.76	+1.3
2,912,145	+		GFF2855	0.84	+0.9
2,912,145	+		GFF2855	0.84	-0.4
2,912,145	+		GFF2855	0.84	-0.1
2,912,154	-		GFF2855	0.85	-0.3
2,912,172	-		GFF2855	0.87	-0.4
2,912,201	+		GFF2855	0.90	+0.4
2,912,206	+				+1.5
2,912,206	+				+1.2
2,912,214	-				-0.9
2,912,261	+				-0.0
2,912,261	+				-0.5
2,912,269	-				+0.5
2,912,279	-				-0.5
2,912,281	+				+0.8
2,912,326	-				+0.1
2,912,350	-				+1.8
2,912,390	+		GFF2856	0.12	+0.7
2,912,390	+		GFF2856	0.12	-1.8
2,912,390	+		GFF2856	0.12	-2.5
2,912,390	+		GFF2856	0.12	+0.6
2,912,398	-		GFF2856	0.13	-0.8
2,912,398	-		GFF2856	0.13	-1.4
2,912,398	-		GFF2856	0.13	+1.5
2,912,409	+		GFF2856	0.14	-1.0
2,912,427	-		GFF2856	0.16	-1.4
2,912,432	-		GFF2856	0.17	+1.1
2,912,432	-		GFF2856	0.17	+1.7
2,912,434	+		GFF2856	0.17	-0.9
2,912,479	+		GFF2856	0.23	-0.5
2,912,516	-		GFF2856	0.27	-0.1
2,912,559	+		GFF2856	0.32	-2.5
2,912,584	+		GFF2856	0.35	-0.8
2,912,631	+		GFF2856	0.41	+0.5
2,912,666	+		GFF2856	0.45	+0.3
2,912,675	-		GFF2856	0.46	+0.7
2,912,700	+		GFF2856	0.49	-0.6
2,912,773	+		GFF2856	0.58	-0.5
2,912,790	+		GFF2856	0.60	-0.6
2,912,797	-		GFF2856	0.61	-0.4
2,912,826	+		GFF2856	0.64	-1.4
2,912,855	+		GFF2856	0.68	-1.6
2,912,855	+		GFF2856	0.68	+0.6
2,912,871	+		GFF2856	0.70	+0.2
2,912,871	+		GFF2856	0.70	-0.1
2,912,878	-		GFF2856	0.71	-0.2
2,912,879	-		GFF2856	0.71	-1.0
2,912,880	+		GFF2856	0.71	+0.8
2,912,943	-		GFF2856	0.78	+1.0
2,912,955	+		GFF2856	0.80	+0.1
2,912,970	+		GFF2856	0.82	-0.7
2,912,970	+		GFF2856	0.82	-0.3
2,912,970	+		GFF2856	0.82	-0.9
2,912,978	-		GFF2856	0.83	-0.0
2,912,978	-		GFF2856	0.83	-1.1
2,912,978	-		GFF2856	0.83	-0.5
2,912,978	-		GFF2856	0.83	+0.1
2,912,978	-		GFF2856	0.83	-0.1
2,912,978	-		GFF2856	0.83	+0.3
2,912,978	-		GFF2856	0.83	+0.9
2,913,051	-				+0.6
2,913,062	+				-0.1
2,913,062	+				+1.0
2,913,093	+				-0.5
2,913,117	+				+0.7
2,913,149	+				+0.6
2,913,149	+				+1.7
2,913,152	-				+1.2
2,913,152	-				-1.0
2,913,152	-				+0.9
2,913,157	-				+0.4
2,913,157	-				+0.9
2,913,177	+				+0.6
2,913,193	-				-0.6
2,913,193	-				-0.1
2,913,193	-				+0.6
2,913,193	-				-0.3
2,913,204	+				-1.9
2,913,233	-				-0.6
2,913,250	+				-0.5
2,913,291	+				-1.1