Strain Fitness in Sphingobium sp. HT1-2 around GFF2817

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,856,819	-		GFF2815	0.80	-0.5
2,856,848	+		GFF2815	0.83	+0.5
2,856,848	+		GFF2815	0.83	-2.8
2,856,849	+		GFF2815	0.83	-0.2
2,856,856	-		GFF2815	0.84	-0.4
2,856,856	-		GFF2815	0.84	-0.7
2,856,857	-		GFF2815	0.84	+1.5
2,856,863	-		GFF2815	0.85	-0.6
2,856,894	+		GFF2815	0.88	-1.5
2,856,904	+		GFF2815	0.90	-0.6
2,856,912	-				-1.8
2,856,913	-				-0.9
2,856,923	+				-0.1
2,856,923	+				-1.1
2,856,946	-				+0.4
2,856,975	+				-2.1
2,856,975	+				-0.6
2,856,983	-				-1.1
2,857,002	+				-0.9
2,857,014	-				+0.2
2,857,020	+				+0.2
2,857,020	+				-0.7
2,857,020	+				-0.4
2,857,028	-				+1.2
2,857,043	-				-0.1
2,857,080	-				+0.1
2,857,080	-				-1.7
2,857,080	-				+0.4
2,857,080	-				-0.7
2,857,080	-				-1.0
2,857,098	-				-1.7
2,857,098	-				-0.9
2,857,098	-				+0.8
2,857,098	-				+0.3
2,857,121	+				-0.7
2,857,121	+				-0.7
2,857,121	+				-0.2
2,857,121	+				-0.6
2,857,121	+				-0.4
2,857,121	+				-1.0
2,857,121	+				+1.0
2,857,121	+				-0.2
2,857,121	+				-0.1
2,857,121	+				+1.1
2,857,121	+				+0.3
2,857,121	+				-1.3
2,857,121	+				+0.1
2,857,126	+				-0.1
2,857,129	-				+0.7
2,857,129	-				+1.0
2,857,129	-				-0.3
2,857,129	-				-0.5
2,857,129	-				+0.5
2,857,129	-				-1.6
2,857,129	-				-0.3
2,857,129	-				-1.3
2,857,129	-				+0.6
2,857,129	-				+0.7
2,857,129	-				-1.8
2,857,129	-				-0.8
2,857,129	-				+0.6
2,857,129	-				-0.3
2,857,131	+				-2.2
2,857,134	-				+0.1
2,857,139	-				-0.1
2,857,142	+				+0.7
2,857,144	-				+1.1
2,857,150	-				-1.2
2,857,150	-				-1.3
2,857,150	-				+0.6
2,857,150	-				-0.3
2,857,151	-				-1.4
2,857,157	+				-0.6
2,857,161	+				-1.6
2,857,161	+				-1.5
2,857,161	+				-0.6
2,857,161	+				-1.0
2,857,161	+				+2.3
2,857,161	+				-0.7
2,857,165	-		GFF2816	0.10	-0.2
2,857,169	-		GFF2816	0.11	-2.2
2,857,169	-		GFF2816	0.11	-0.1
2,857,169	-		GFF2816	0.11	-1.1
2,857,180	+		GFF2816	0.12	-1.7
2,857,195	-		GFF2816	0.14	-0.8
2,857,195	-		GFF2816	0.14	-0.5
2,857,208	+		GFF2816	0.16	-1.6
2,857,214	-		GFF2816	0.17	+0.1
2,857,218	-		GFF2816	0.17	+0.5
2,857,241	+		GFF2816	0.20	+0.9
2,857,261	+		GFF2816	0.23	+1.0
2,857,261	+		GFF2816	0.23	-1.1
2,857,262	+		GFF2816	0.23	-0.2
2,857,262	+		GFF2816	0.23	+0.5
2,857,269	-		GFF2816	0.24	-0.8
2,857,292	-		GFF2816	0.27	-0.7
2,857,305	+		GFF2816	0.29	-2.5
2,857,351	+		GFF2816	0.36	-0.3
2,857,364	-		GFF2816	0.37	-0.1
2,857,366	+		GFF2816	0.38	-0.5
2,857,368	-		GFF2816	0.38	+1.2
2,857,369	-		GFF2816	0.38	-1.0
2,857,369	-		GFF2816	0.38	+0.4
2,857,369	-		GFF2816	0.38	-0.1
2,857,374	-		GFF2816	0.39	-0.7
2,857,374	-		GFF2816	0.39	+0.3
2,857,411	-		GFF2816	0.44	+1.1
2,857,433	-		GFF2816	0.47	-1.8
2,857,436	-		GFF2816	0.47	+0.7
2,857,436	-		GFF2816	0.47	-0.4
2,857,443	+		GFF2816	0.48	-0.9
2,857,443	+		GFF2816	0.48	+1.2
2,857,451	-		GFF2816	0.49	-1.1
2,857,451	-		GFF2816	0.49	+0.5
2,857,469	+		GFF2816	0.52	+0.2
2,857,478	+		GFF2816	0.53	+0.5
2,857,508	-		GFF2816	0.57	+0.3
2,857,508	-		GFF2816	0.57	+0.0
2,857,508	-		GFF2816	0.57	-1.5
2,857,508	-		GFF2816	0.57	-0.0
2,857,588	-		GFF2816	0.68	-1.2
2,857,627	+		GFF2816	0.73	+0.7
2,857,645	-		GFF2816	0.76	-0.3
2,857,645	-		GFF2816	0.76	-2.5
2,857,645	-		GFF2816	0.76	+1.3
2,857,670	+		GFF2816	0.79	+0.5
2,857,684	-		GFF2816	0.81	+0.7
2,857,699	+		GFF2816	0.83	-0.5
2,857,707	-		GFF2816	0.84	-0.7
2,857,707	-		GFF2816	0.84	-0.3
2,857,727	+		GFF2816	0.87	-0.6
2,857,727	+		GFF2816	0.87	+0.8
2,857,727	+		GFF2816	0.87	-1.2
2,857,735	-		GFF2816	0.88	-0.8
2,857,735	-		GFF2816	0.88	-0.2
2,857,744	+		GFF2816	0.89	-0.0
2,857,754	+				+0.6
2,857,754	+				-0.8
2,857,762	-				-2.0
2,857,793	+				+0.8
2,857,799	+				-1.0
2,857,801	-				+1.5
2,857,810	-				+0.2
2,857,813	-				-1.6
2,857,824	+				-1.0
2,857,824	+				+0.8
2,857,832	-				+0.7
2,857,832	-				+0.5
2,857,832	-				+0.1
2,857,832	-				+0.1
2,857,846	+				+0.4
2,857,849	-				-0.7
2,857,850	+				+1.0
2,857,850	+				+0.2
2,857,850	+				-1.9
2,857,850	+				-1.7
2,857,850	+				-0.5
2,857,850	+				+0.6
2,857,854	-				+1.4
2,857,858	-				-2.1
2,857,875	-				-0.7
2,857,875	-				-2.1
2,857,888	+				-1.5
2,857,889	+				+0.4
2,857,891	+				-0.1
2,857,899	+				-0.5
2,857,899	+				-1.1
2,857,899	+				-0.3
2,857,899	+				+0.4
2,857,907	-				-0.8
2,857,907	-				-0.8
2,857,925	+				-2.3
2,857,934	+				-2.3
2,857,943	+		GFF2817	0.10	-0.0
2,857,943	+		GFF2817	0.10	-0.3
2,857,943	+		GFF2817	0.10	+0.1
2,857,948	+		GFF2817	0.11	-0.8
2,857,951	-		GFF2817	0.11	-1.5
2,857,951	-		GFF2817	0.11	-1.2
2,857,951	-		GFF2817	0.11	-0.8
2,857,956	-		GFF2817	0.11	+0.3
2,857,968	+		GFF2817	0.12	-0.8
2,857,987	+		GFF2817	0.14	-1.0
2,857,992	+		GFF2817	0.14	+0.7
2,858,000	-		GFF2817	0.15	-1.5
2,858,005	+		GFF2817	0.15	-0.2
2,858,005	-		GFF2817	0.15	-1.3
2,858,005	-		GFF2817	0.15	+0.2
2,858,013	-		GFF2817	0.16	-0.1
2,858,034	-		GFF2817	0.17	-0.8
2,858,035	-		GFF2817	0.18	+0.6
2,858,045	-		GFF2817	0.18	-1.7
2,858,053	+		GFF2817	0.19	-0.7
2,858,067	+		GFF2817	0.20	-2.6
2,858,080	-		GFF2817	0.21	-1.5
2,858,085	+		GFF2817	0.22	-0.0
2,858,085	+		GFF2817	0.22	-0.5
2,858,093	-		GFF2817	0.22	-0.6
2,858,103	-		GFF2817	0.23	+1.2
2,858,103	-		GFF2817	0.23	+0.1
2,858,109	+		GFF2817	0.24	+0.2
2,858,109	+		GFF2817	0.24	+0.2
2,858,109	+		GFF2817	0.24	-0.8
2,858,112	-		GFF2817	0.24	-1.0
2,858,117	-		GFF2817	0.24	+0.2
2,858,127	-		GFF2817	0.25	-0.7
2,858,127	-		GFF2817	0.25	-0.8
2,858,127	-		GFF2817	0.25	-1.3
2,858,134	-		GFF2817	0.26	-0.7
2,858,167	+		GFF2817	0.28	-1.9
2,858,174	-		GFF2817	0.29	+0.5
2,858,177	+		GFF2817	0.29	-1.5
2,858,180	+		GFF2817	0.29	-0.7
2,858,180	-		GFF2817	0.29	-0.0
2,858,183	-		GFF2817	0.29	+0.4
2,858,183	-		GFF2817	0.29	+0.7
2,858,188	-		GFF2817	0.30	-0.9
2,858,208	+		GFF2817	0.31	-0.8
2,858,208	+		GFF2817	0.31	+0.8
2,858,208	+		GFF2817	0.31	-0.3
2,858,208	+		GFF2817	0.31	-1.4
2,858,208	+		GFF2817	0.31	+0.1
2,858,208	+		GFF2817	0.31	-0.5
2,858,208	+		GFF2817	0.31	-1.0
2,858,208	+		GFF2817	0.31	-1.6
2,858,208	+		GFF2817	0.31	+0.2
2,858,208	+		GFF2817	0.31	+0.3
2,858,208	+		GFF2817	0.31	+0.3
2,858,208	+		GFF2817	0.31	+0.7
2,858,208	+		GFF2817	0.31	+0.4
2,858,208	+		GFF2817	0.31	-0.7
2,858,208	+		GFF2817	0.31	-0.6
2,858,208	+		GFF2817	0.31	-1.6
2,858,208	+		GFF2817	0.31	-0.6
2,858,208	+		GFF2817	0.31	-2.8
2,858,208	+		GFF2817	0.31	-1.8
2,858,208	+		GFF2817	0.31	-0.0
2,858,208	+		GFF2817	0.31	+1.2
2,858,216	-		GFF2817	0.32	+0.5
2,858,216	-		GFF2817	0.32	-0.5
2,858,216	-		GFF2817	0.32	-0.6
2,858,216	-		GFF2817	0.32	+0.2
2,858,216	-		GFF2817	0.32	-1.0
2,858,216	-		GFF2817	0.32	-2.8
2,858,216	-		GFF2817	0.32	-2.8
2,858,216	-		GFF2817	0.32	-0.3
2,858,216	-		GFF2817	0.32	-0.5
2,858,216	-		GFF2817	0.32	-0.9
2,858,216	-		GFF2817	0.32	-0.0
2,858,216	-		GFF2817	0.32	-0.6
2,858,216	-		GFF2817	0.32	-2.2
2,858,216	-		GFF2817	0.32	-2.0
2,858,216	-		GFF2817	0.32	-0.9
2,858,216	-		GFF2817	0.32	+0.1
2,858,216	-		GFF2817	0.32	+0.1
2,858,216	-		GFF2817	0.32	+0.4
2,858,218	+		GFF2817	0.32	+1.5
2,858,220	-		GFF2817	0.32	-1.1
2,858,226	-		GFF2817	0.33	-0.3
2,858,226	-		GFF2817	0.33	-0.8
2,858,231	+		GFF2817	0.33	-0.6
2,858,231	+		GFF2817	0.33	-1.2
2,858,254	+		GFF2817	0.35	-0.0
2,858,275	-		GFF2817	0.37	-0.8
2,858,286	+		GFF2817	0.38	+0.5
2,858,358	-		GFF2817	0.44	-1.3
2,858,388	-		GFF2817	0.46	+0.0
2,858,403	-		GFF2817	0.47	-2.1
2,858,417	+		GFF2817	0.48	-1.0
2,858,417	+		GFF2817	0.48	+0.4
2,858,417	+		GFF2817	0.48	+0.5
2,858,417	+		GFF2817	0.48	+0.9
2,858,417	+		GFF2817	0.48	+0.5
2,858,417	+		GFF2817	0.48	-0.2
2,858,417	+		GFF2817	0.48	-2.0
2,858,417	+		GFF2817	0.48	+0.1
2,858,418	-		GFF2817	0.48	+0.0
2,858,425	-		GFF2817	0.49	-1.6
2,858,425	-		GFF2817	0.49	+1.1
2,858,425	-		GFF2817	0.49	-2.3
2,858,425	-		GFF2817	0.49	-0.8
2,858,425	-		GFF2817	0.49	+0.8
2,858,441	+		GFF2817	0.50	-1.2
2,858,461	-		GFF2817	0.52	-0.3
2,858,463	+		GFF2817	0.52	+0.0
2,858,463	+		GFF2817	0.52	-1.9
2,858,468	+		GFF2817	0.52	+0.0
2,858,481	+		GFF2817	0.53	+0.2
2,858,484	-		GFF2817	0.54	+0.7
2,858,498	+		GFF2817	0.55	+0.8
2,858,528	+		GFF2817	0.57	-1.0
2,858,531	-		GFF2817	0.57	-0.3
2,858,533	+		GFF2817	0.58	+0.0
2,858,536	-		GFF2817	0.58	+0.6
2,858,541	-		GFF2817	0.58	+0.3
2,858,541	-		GFF2817	0.58	-0.6
2,858,541	-		GFF2817	0.58	+0.4
2,858,547	+		GFF2817	0.59	+0.4
2,858,547	+		GFF2817	0.59	-0.3
2,858,551	+		GFF2817	0.59	+1.3
2,858,551	+		GFF2817	0.59	-1.7
2,858,552	+		GFF2817	0.59	-0.5
2,858,552	+		GFF2817	0.59	+0.2
2,858,552	+		GFF2817	0.59	-0.6
2,858,555	-		GFF2817	0.59	-0.3
2,858,567	-		GFF2817	0.60	-1.9
2,858,569	+		GFF2817	0.61	-1.0
2,858,577	-		GFF2817	0.61	-1.0
2,858,589	-		GFF2817	0.62	-0.8
2,858,603	+		GFF2817	0.63	-0.7
2,858,645	+		GFF2817	0.67	-0.5
2,858,645	+		GFF2817	0.67	-0.2
2,858,645	+		GFF2817	0.67	-0.0
2,858,645	+		GFF2817	0.67	-0.5
2,858,651	+		GFF2817	0.67	+0.2
2,858,653	-		GFF2817	0.67	-0.3
2,858,687	+		GFF2817	0.70	-0.8
2,858,692	+		GFF2817	0.70	+0.2
2,858,695	-		GFF2817	0.71	-1.5
2,858,713	+		GFF2817	0.72	+0.1
2,858,713	-		GFF2817	0.72	-2.1
2,858,723	+		GFF2817	0.73	-0.1
2,858,730	-		GFF2817	0.74	-0.5
2,858,738	-		GFF2817	0.74	-0.6
2,858,748	-		GFF2817	0.75	-1.1
2,858,751	-		GFF2817	0.75	+0.4
2,858,754	+		GFF2817	0.75	-0.8
2,858,762	+		GFF2817	0.76	-1.0
2,858,775	+		GFF2817	0.77	+0.1
2,858,789	-		GFF2817	0.78	-0.2
2,858,798	-		GFF2817	0.79	-1.7
2,858,799	-		GFF2817	0.79	-0.1
2,858,825	-		GFF2817	0.81	-1.1
2,858,844	-		GFF2817	0.83	-1.8
2,858,869	+		GFF2817	0.85	-1.7
2,858,880	+		GFF2817	0.86	-0.9
2,858,880	+		GFF2817	0.86	-0.8
2,858,880	+		GFF2817	0.86	+0.6
2,858,885	+		GFF2817	0.86	-0.8
2,858,888	-		GFF2817	0.86	+0.4
2,858,890	+		GFF2817	0.86	+0.2
2,858,893	-		GFF2817	0.87	-0.2
2,858,903	+		GFF2817	0.87	-0.6
2,858,903	+		GFF2817	0.87	+0.8
2,858,911	+		GFF2817	0.88	-1.0
2,858,946	+				-0.5
2,858,966	+				-0.5
2,858,991	-				+1.2
2,859,025	+				-0.7
2,859,025	+				+0.4
2,859,033	-				+0.2
2,859,041	-				-1.3
2,859,055	+				-0.5
2,859,059	+				+0.7
2,859,079	-				-2.2
2,859,092	-				-0.4
2,859,105	+				-1.0
2,859,105	+				+0.3
2,859,105	+				+0.5
2,859,105	+				+0.1
2,859,105	+				+0.2
2,859,108	-				-1.0
2,859,108	-				-0.9
2,859,108	-				+0.0
2,859,110	+				+0.6
2,859,110	+				+1.2
2,859,110	+				-0.3
2,859,110	+				-0.3
2,859,113	-				-1.4
2,859,118	-				+0.3
2,859,118	-				-1.8
2,859,120	+				+0.1
2,859,120	+				-0.8
2,859,120	+				-0.2
2,859,120	+				-0.0
2,859,127	-				-1.9
2,859,128	-				-1.8
2,859,128	-				-0.5
2,859,132	-				+0.1
2,859,137	-				-1.5
2,859,138	+				+0.9
2,859,138	-				+0.9
2,859,139	-				-0.2
2,859,144	+				+0.0
2,859,149	+				-0.5
2,859,168	-				-0.2
2,859,187	+				-1.6
2,859,195	+				-0.9
2,859,195	+				+0.8
2,859,212	+				+0.7
2,859,245	+				+1.0
2,859,253	-				-2.2
2,859,253	-				-1.6
2,859,253	-				-0.9
2,859,253	-				-0.1
2,859,255	+				-1.0
2,859,255	+				-1.4
2,859,260	+				-1.0
2,859,260	+				-1.0
2,859,260	+				-0.2
2,859,263	-				-0.9
2,859,263	-				-1.2
2,859,263	-				+0.0
2,859,265	+				-0.6
2,859,268	-				-0.4
2,859,273	-				+0.2
2,859,273	-				-0.3
2,859,294	+				-0.4
2,859,294	+				-0.0
2,859,294	+				+0.6
2,859,294	+				-1.8
2,859,294	+				+0.1
2,859,294	+				-0.8
2,859,294	+				+0.8
2,859,294	+				+0.0
2,859,294	+				-1.6
2,859,294	+				-1.6
2,859,294	+				-0.7
2,859,294	+				+1.0
2,859,294	+				+0.3
2,859,302	-				-0.9
2,859,302	-				+1.1
2,859,302	-				+0.5
2,859,302	-				-0.5
2,859,302	-				-0.6
2,859,311	+				-1.1
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2,859,381	-		GFF2818	0.14	-1.3
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2,859,419	+		GFF2818	0.16	-1.6
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2,859,560	-		GFF2818	0.24	-2.0
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2,859,628	-		GFF2818	0.28	-1.0
2,859,628	-		GFF2818	0.28	-1.0
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2,859,628	-		GFF2818	0.28	-1.1
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2,859,690	+		GFF2818	0.32	-1.1
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2,859,708	-		GFF2818	0.33	-1.7
2,859,708	-		GFF2818	0.33	-0.2
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2,859,744	-		GFF2818	0.35	-0.5
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2,859,762	-		GFF2818	0.36	-0.3
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2,859,791	-		GFF2818	0.38	-0.2
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2,859,859	-		GFF2818	0.42	-1.6
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2,859,904	-		GFF2818	0.45	-2.2
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2,859,904	-		GFF2818	0.45	-1.6
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2,859,904	-		GFF2818	0.45	+0.1
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2,859,904	-		GFF2818	0.45	-1.0
2,859,906	+		GFF2818	0.45	-1.0
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2,859,906	+		GFF2818	0.45	-0.0
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2,859,920	+		GFF2818	0.46	-0.2
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2,859,981	+		GFF2818	0.49	-0.8
2,859,981	+		GFF2818	0.49	-0.0
2,859,981	+		GFF2818	0.49	+0.2
2,859,981	+		GFF2818	0.49	-1.2
2,859,981	+		GFF2818	0.49	-2.2
2,859,989	-		GFF2818	0.50	-1.0
2,859,989	-		GFF2818	0.50	-1.0
2,859,989	-		GFF2818	0.50	-0.1
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2,859,989	-		GFF2818	0.50	-1.9
2,859,991	+		GFF2818	0.50	-0.7
2,859,991	+		GFF2818	0.50	-1.4
2,860,004	+		GFF2818	0.51	-0.7
2,860,004	+		GFF2818	0.51	-0.5
2,860,004	+		GFF2818	0.51	+0.2
2,860,004	+		GFF2818	0.51	+0.5
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2,860,004	+		GFF2818	0.51	-2.6
2,860,004	+		GFF2818	0.51	+1.0
2,860,004	+		GFF2818	0.51	-2.1
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2,860,012	-		GFF2818	0.51	-0.0
2,860,012	-		GFF2818	0.51	-0.8
2,860,012	-		GFF2818	0.51	-0.5
2,860,012	-		GFF2818	0.51	+1.5
2,860,022	+		GFF2818	0.52	+1.3
2,860,028	+		GFF2818	0.52	+1.0
2,860,033	+		GFF2818	0.53	-0.4
2,860,033	+		GFF2818	0.53	-1.5
2,860,038	+		GFF2818	0.53	-1.9
2,860,046	-		GFF2818	0.53	+0.8