Strain Fitness in Sphingobium sp. HT1-2 around GFF2725

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,748,664	+				+1.4
2,748,682	-				+2.1
2,748,703	+				-0.3
2,748,711	-				+0.1
2,748,713	+				-0.2
2,748,713	+				+0.6
2,748,777	-		GFF2724	0.21	-0.3
2,748,784	+		GFF2724	0.24	+0.8
2,748,792	-		GFF2724	0.27	+0.0
2,748,814	-		GFF2724	0.36	-0.6
2,748,832	-		GFF2724	0.44	+0.5
2,748,842	-		GFF2724	0.48	-1.2
2,748,842	-		GFF2724	0.48	-0.5
2,748,842	-		GFF2724	0.48	+1.2
2,748,848	-		GFF2724	0.50	-1.7
2,748,857	+		GFF2724	0.54	+0.7
2,748,892	+		GFF2724	0.68	-0.0
2,748,900	-		GFF2724	0.72	+1.4
2,748,900	-		GFF2724	0.72	+0.6
2,748,900	-		GFF2724	0.72	+0.3
2,748,900	-		GFF2724	0.72	-1.0
2,748,902	+		GFF2724	0.72	-0.3
2,748,907	+		GFF2724	0.74	-1.9
2,748,907	+		GFF2724	0.74	-0.6
2,748,907	+		GFF2724	0.74	+1.1
2,748,907	+		GFF2724	0.74	-1.1
2,748,907	+		GFF2724	0.74	+0.4
2,748,907	+		GFF2724	0.74	+0.6
2,748,915	-		GFF2724	0.78	-0.2
2,748,915	-		GFF2724	0.78	-1.6
2,748,915	-		GFF2724	0.78	-0.0
2,748,915	-		GFF2724	0.78	+0.3
2,748,915	-		GFF2724	0.78	-0.7
2,748,915	-		GFF2724	0.78	+0.4
2,748,938	-		GFF2724	0.87	+0.6
2,748,944	+				+0.6
2,748,944	+				+1.3
2,748,947	-				+0.6
2,748,947	-				-1.1
2,748,947	-				+0.8
2,748,952	-				-0.1
2,748,952	-				+1.0
2,748,952	-				+0.1
2,748,979	+				-0.0
2,748,981	-				-0.4
2,748,986	+				-0.3
2,749,001	+				+0.0
2,749,001	+				-2.8
2,749,001	+				-0.2
2,749,001	+				-0.2
2,749,007	-				-0.0
2,749,008	-				-0.5
2,749,009	-				-0.3
2,749,014	-				-1.7
2,749,014	-				-0.9
2,749,014	-				+1.0
2,749,014	-				-0.6
2,749,014	-				-0.6
2,749,014	-				-1.6
2,749,014	-				-1.1
2,749,031	+				-0.9
2,749,031	+				-0.5
2,749,031	+				+0.7
2,749,031	+				+1.5
2,749,031	+				+0.3
2,749,031	+				-2.4
2,749,031	+				-0.3
2,749,031	+				-2.1
2,749,039	-				-0.1
2,749,039	-				-2.3
2,749,039	-				-0.8
2,749,039	-				+1.1
2,749,046	+				-1.3
2,749,051	+				-0.1
2,749,051	-				-0.1
2,749,054	-				+1.4
2,749,056	+				-0.7
2,749,056	-				-0.5
2,749,075	-				-0.2
2,749,093	-				-1.1
2,749,096	-				-0.7
2,749,099	-				+0.8
2,749,110	-				-0.9
2,749,112	+				-0.8
2,749,120	-				+0.0
2,749,120	-				+1.3
2,749,120	-				+0.1
2,749,152	+				-1.3
2,749,152	+				+0.5
2,749,152	+				-0.5
2,749,152	+				+2.2
2,749,155	-				+0.7
2,749,160	-				-1.3
2,749,160	-				+0.8
2,749,160	-				+1.1
2,749,160	-				+2.6
2,749,160	-				+0.7
2,749,165	-				-0.7
2,749,165	-				+0.3
2,749,213	-				-1.8
2,749,228	-				-0.5
2,749,240	-				-0.5
2,749,242	+				+0.9
2,749,268	+				-0.0
2,749,611	+				+0.4
2,749,637	+				-0.2
2,749,645	-				-0.0
2,749,654	+				+0.7
2,749,656	+				+0.5
2,749,656	+				+1.6
2,749,656	+				+0.4
2,749,656	+				-0.5
2,749,661	+				+0.1
2,749,664	-				+0.0
2,749,664	-				-0.5
2,749,664	-				-0.6
2,749,666	+				+1.0
2,749,666	+				+0.3
2,749,666	+				-0.5
2,749,666	+				-0.4
2,749,666	+				+0.4
2,749,666	+				+0.2
2,749,666	+				+0.6
2,749,666	+				-1.0
2,749,666	-				+2.0
2,749,674	-				-0.6
2,749,674	-				-0.9
2,749,674	-				+1.5
2,749,674	-				+0.7
2,749,674	-				-0.5
2,749,679	+		GFF2725	0.10	-1.3
2,749,687	-		GFF2725	0.12	+0.3
2,749,717	+		GFF2725	0.17	+2.2
2,749,722	+		GFF2725	0.18	+1.9
2,749,722	+		GFF2725	0.18	-1.3
2,749,727	+		GFF2725	0.19	-1.2
2,749,730	-		GFF2725	0.20	+0.8
2,749,730	-		GFF2725	0.20	+0.3
2,749,730	-		GFF2725	0.20	-1.1
2,749,735	-		GFF2725	0.20	+1.0
2,749,764	+		GFF2725	0.26	-0.3
2,749,764	+		GFF2725	0.26	-0.0
2,749,785	+		GFF2725	0.30	-1.0
2,749,793	-		GFF2725	0.31	+0.6
2,749,793	-		GFF2725	0.31	+0.6
2,749,793	-		GFF2725	0.31	-0.2
2,749,793	-		GFF2725	0.31	-1.1
2,749,793	-		GFF2725	0.31	-1.5
2,749,793	-		GFF2725	0.31	-0.9
2,749,800	+		GFF2725	0.32	-0.0
2,749,807	-		GFF2725	0.34	+0.4
2,749,809	+		GFF2725	0.34	-0.2
2,749,809	+		GFF2725	0.34	+1.0
2,749,809	+		GFF2725	0.34	+0.4
2,749,817	-		GFF2725	0.36	-0.5
2,749,817	-		GFF2725	0.36	+0.5
2,749,827	-		GFF2725	0.37	-0.7
2,749,835	+		GFF2725	0.39	-0.3
2,749,838	+		GFF2725	0.39	-0.2
2,749,846	-		GFF2725	0.41	-0.7
2,749,853	+		GFF2725	0.42	+1.0
2,749,859	+		GFF2725	0.43	+0.3
2,749,859	+		GFF2725	0.43	+0.1
2,749,884	+		GFF2725	0.48	+1.6
2,749,891	-		GFF2725	0.49	+1.5
2,749,892	-		GFF2725	0.49	+0.4
2,749,892	-		GFF2725	0.49	+0.1
2,749,892	-		GFF2725	0.49	+0.1
2,749,894	+		GFF2725	0.50	-0.1
2,749,897	-		GFF2725	0.50	-1.1
2,749,902	-		GFF2725	0.51	+0.5
2,749,902	-		GFF2725	0.51	-0.1
2,749,902	-		GFF2725	0.51	-1.2
2,749,902	-		GFF2725	0.51	+0.2
2,749,905	+		GFF2725	0.52	+0.7
2,749,910	+		GFF2725	0.53	-1.5
2,749,912	+		GFF2725	0.53	-1.2
2,749,913	-		GFF2725	0.53	-0.3
2,749,913	-		GFF2725	0.53	-1.0
2,749,923	-		GFF2725	0.55	+0.3
2,749,930	+		GFF2725	0.56	+0.8
2,749,935	+		GFF2725	0.57	-0.2
2,749,935	-		GFF2725	0.57	-0.7
2,749,940	+		GFF2725	0.58	+1.1
2,749,943	-		GFF2725	0.59	+2.6
2,749,945	+		GFF2725	0.59	+1.5
2,749,945	+		GFF2725	0.59	+1.2
2,749,947	+		GFF2725	0.59	-0.0
2,749,948	-		GFF2725	0.60	-0.7
2,749,948	-		GFF2725	0.60	+0.4
2,749,948	-		GFF2725	0.60	+0.8
2,749,993	+		GFF2725	0.68	+0.2
2,749,994	+		GFF2725	0.68	+1.8
2,749,994	+		GFF2725	0.68	+1.6
2,749,994	+		GFF2725	0.68	-0.2
2,749,994	+		GFF2725	0.68	-0.2
2,749,994	+		GFF2725	0.68	+1.4
2,749,994	+		GFF2725	0.68	-1.1
2,749,994	+		GFF2725	0.68	+0.8
2,749,994	+		GFF2725	0.68	+0.6
2,749,994	+		GFF2725	0.68	+0.2
2,749,994	+		GFF2725	0.68	+1.3
2,749,994	+		GFF2725	0.68	-0.2
2,749,994	+		GFF2725	0.68	-0.0
2,749,994	+		GFF2725	0.68	+1.2
2,750,002	-		GFF2725	0.70	-1.3
2,750,002	-		GFF2725	0.70	-0.7
2,750,002	-		GFF2725	0.70	+0.5
2,750,002	-		GFF2725	0.70	-0.2
2,750,013	+		GFF2725	0.72	+0.1
2,750,013	+		GFF2725	0.72	+0.0
2,750,013	-		GFF2725	0.72	-0.0
2,750,021	-		GFF2725	0.73	+0.8
2,750,021	-		GFF2725	0.73	-0.3
2,750,021	-		GFF2725	0.73	-0.5
2,750,021	-		GFF2725	0.73	-0.4
2,750,036	+		GFF2725	0.76	-1.4
2,750,044	-		GFF2725	0.77	-0.8
2,750,050	+		GFF2725	0.78	-0.0
2,750,050	+		GFF2725	0.78	+1.0
2,750,058	-		GFF2725	0.80	-0.4
2,750,058	-		GFF2725	0.80	+1.4
2,750,058	-		GFF2725	0.80	+2.0
2,750,063	+		GFF2725	0.81	-0.5
2,750,071	-		GFF2725	0.82	-0.4
2,750,130	+				-0.9
2,750,130	+				+1.6
2,750,138	-				+1.1
2,750,138	-				-1.0
2,750,138	-				+0.1
2,750,138	-				-1.2
2,750,138	-				-0.5
2,750,138	-				-0.1
2,750,149	+				+0.5
2,750,155	-				+0.5
2,750,157	-				-1.6
2,750,168	+				-0.4
2,750,168	+				+0.6
2,750,176	-				-1.0
2,750,176	-				+0.8
2,750,178	-				-0.0
2,750,195	-				-0.1
2,750,213	-		GFF2726	0.12	+2.4
2,750,213	-		GFF2726	0.12	-0.3
2,750,306	+		GFF2726	0.40	+0.4
2,750,310	+		GFF2726	0.41	-1.2
2,750,320	+		GFF2726	0.44	+0.8
2,750,328	-		GFF2726	0.46	-0.1
2,750,335	+		GFF2726	0.48	+1.1
2,750,336	-		GFF2726	0.49	+0.3
2,750,369	+		GFF2726	0.58	+2.1
2,750,377	-		GFF2726	0.61	+0.8
2,750,386	+		GFF2726	0.63	-0.2
2,750,396	+		GFF2726	0.66	-0.2
2,750,396	+		GFF2726	0.66	+1.0
2,750,409	+		GFF2726	0.70	-0.6
2,750,417	-		GFF2726	0.73	+0.3
2,750,463	-		GFF2726	0.86	+1.0
2,750,463	-		GFF2726	0.86	-1.2
2,750,520	-				-0.1
2,750,542	-				-0.7
2,750,542	-				-0.4
2,750,589	+				-2.2
2,750,613	+		GFF2727	0.13	-1.4
2,750,641	-		GFF2727	0.17	-0.4
2,750,655	+		GFF2727	0.19	+0.4
2,750,698	-		GFF2727	0.26	+2.1
2,750,698	-		GFF2727	0.26	+0.6
2,750,741	+		GFF2727	0.32	+1.4
2,750,744	-		GFF2727	0.32	+0.4
2,750,749	-		GFF2727	0.33	+1.2
2,750,749	-		GFF2727	0.33	+1.0
2,750,750	-		GFF2727	0.33	-0.9
2,750,756	-		GFF2727	0.34	-0.8
2,750,763	-		GFF2727	0.35	-0.3
2,750,769	+		GFF2727	0.36	-1.1
2,750,777	-		GFF2727	0.37	+1.1
2,750,792	+		GFF2727	0.40	+0.4
2,750,792	+		GFF2727	0.40	+0.1
2,750,792	+		GFF2727	0.40	+1.0
2,750,800	-		GFF2727	0.41	+1.1
2,750,807	-		GFF2727	0.42	-0.3
2,750,808	-		GFF2727	0.42	+0.8
2,750,815	+		GFF2727	0.43	-0.5
2,750,818	-		GFF2727	0.43	+0.8
2,750,818	-		GFF2727	0.43	-1.4
2,750,830	+		GFF2727	0.45	+1.1
2,750,838	-		GFF2727	0.46	+0.0
2,750,838	-		GFF2727	0.46	+0.5
2,750,838	-		GFF2727	0.46	+0.8
2,750,838	-		GFF2727	0.46	-1.9
2,750,861	+		GFF2727	0.50	+0.6
2,750,869	-		GFF2727	0.51	+0.4
2,750,909	-		GFF2727	0.57	+0.8
2,750,916	+		GFF2727	0.58	-1.2
2,750,935	+		GFF2727	0.60	+0.3
2,750,935	+		GFF2727	0.60	-0.4
2,750,935	+		GFF2727	0.60	-0.5
2,750,935	+		GFF2727	0.60	-0.2
2,750,943	-		GFF2727	0.62	-0.8
2,751,027	+		GFF2727	0.74	-0.7
2,751,027	+		GFF2727	0.74	+1.8
2,751,027	+		GFF2727	0.74	-1.1
2,751,027	+		GFF2727	0.74	-1.1
2,751,027	+		GFF2727	0.74	-0.2
2,751,028	+		GFF2727	0.74	-1.2
2,751,035	-		GFF2727	0.75	-0.4
2,751,035	-		GFF2727	0.75	+0.7
2,751,035	-		GFF2727	0.75	-2.1
2,751,035	-		GFF2727	0.75	+0.4
2,751,035	-		GFF2727	0.75	+0.3
2,751,074	+		GFF2727	0.81	-0.7
2,751,074	+		GFF2727	0.81	+0.0
2,751,082	-		GFF2727	0.82	-0.8
2,751,082	-		GFF2727	0.82	+0.3
2,751,082	-		GFF2727	0.82	-0.1
2,751,095	+		GFF2727	0.84	-1.0
2,751,101	+		GFF2727	0.85	-0.5
2,751,103	-		GFF2727	0.85	-2.0
2,751,103	-		GFF2727	0.85	-1.3
2,751,126	-		GFF2727	0.89	+1.4
2,751,130	+		GFF2727	0.89	-0.0
2,751,130	+		GFF2727	0.89	-0.0
2,751,130	+		GFF2727	0.89	-1.0
2,751,138	-				+0.3
2,751,138	-				-0.6
2,751,140	+				-0.3
2,751,150	+				-0.7
2,751,158	-				-1.6
2,751,163	+				+0.8