Strain Fitness in Sphingobium sp. HT1-2 around GFF2709

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,728,294	-		GFF2708	0.39	-1.6
2,728,304	-		GFF2708	0.40	+1.5
2,728,309	+		GFF2708	0.40	-0.7
2,728,314	+		GFF2708	0.40	-0.5
2,728,317	-		GFF2708	0.40	-1.2
2,728,322	-		GFF2708	0.41	+0.0
2,728,322	-		GFF2708	0.41	+0.6
2,728,322	-		GFF2708	0.41	-0.1
2,728,327	-		GFF2708	0.41	+0.6
2,728,333	-		GFF2708	0.42	-0.1
2,728,345	+		GFF2708	0.42	+0.1
2,728,347	+		GFF2708	0.42	-1.5
2,728,356	-		GFF2708	0.43	-1.7
2,728,361	-		GFF2708	0.43	+0.5
2,728,372	-		GFF2708	0.44	-1.0
2,728,382	+		GFF2708	0.45	-2.1
2,728,382	-		GFF2708	0.45	-1.2
2,728,394	+		GFF2708	0.46	-0.9
2,728,394	+		GFF2708	0.46	-0.4
2,728,402	-		GFF2708	0.46	-1.1
2,728,402	-		GFF2708	0.46	+0.7
2,728,417	-		GFF2708	0.47	+0.0
2,728,469	-		GFF2708	0.51	+0.3
2,728,482	+		GFF2708	0.52	-0.9
2,728,490	-		GFF2708	0.52	+0.9
2,728,505	+		GFF2708	0.53	+1.7
2,728,507	+		GFF2708	0.53	-1.3
2,728,518	+		GFF2708	0.54	-0.3
2,728,564	+		GFF2708	0.57	-1.5
2,728,578	+		GFF2708	0.58	-1.5
2,728,578	+		GFF2708	0.58	-1.9
2,728,583	+		GFF2708	0.59	+0.4
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	+0.5
2,728,583	+		GFF2708	0.59	-1.0
2,728,583	+		GFF2708	0.59	-0.7
2,728,583	+		GFF2708	0.59	-0.8
2,728,583	+		GFF2708	0.59	-0.9
2,728,583	+		GFF2708	0.59	-1.0
2,728,583	+		GFF2708	0.59	+0.1
2,728,583	+		GFF2708	0.59	-1.3
2,728,583	+		GFF2708	0.59	-1.0
2,728,583	+		GFF2708	0.59	-0.5
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	-0.1
2,728,583	+		GFF2708	0.59	-1.1
2,728,583	+		GFF2708	0.59	+0.3
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	-1.0
2,728,583	+		GFF2708	0.59	-1.0
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	+0.3
2,728,591	-		GFF2708	0.59	-0.1
2,728,591	-		GFF2708	0.59	-1.4
2,728,591	-		GFF2708	0.59	+0.4
2,728,591	-		GFF2708	0.59	-0.2
2,728,591	-		GFF2708	0.59	-0.3
2,728,591	-		GFF2708	0.59	-1.3
2,728,591	-		GFF2708	0.59	+0.1
2,728,591	-		GFF2708	0.59	-2.1
2,728,591	-		GFF2708	0.59	+0.0
2,728,591	-		GFF2708	0.59	+0.4
2,728,591	-		GFF2708	0.59	-0.1
2,728,591	-		GFF2708	0.59	-0.3
2,728,591	-		GFF2708	0.59	-1.0
2,728,591	-		GFF2708	0.59	+0.1
2,728,591	-		GFF2708	0.59	-1.4
2,728,591	-		GFF2708	0.59	+0.8
2,728,591	-		GFF2708	0.59	-0.3
2,728,591	-		GFF2708	0.59	-0.8
2,728,591	-		GFF2708	0.59	-0.9
2,728,591	-		GFF2708	0.59	+1.0
2,728,591	-		GFF2708	0.59	+0.3
2,728,591	-		GFF2708	0.59	-0.3
2,728,591	-		GFF2708	0.59	-1.3
2,728,601	-		GFF2708	0.60	-1.8
2,728,606	+		GFF2708	0.60	+0.4
2,728,621	-		GFF2708	0.61	-0.3
2,728,621	-		GFF2708	0.61	+0.4
2,728,678	+		GFF2708	0.65	-0.5
2,728,686	-		GFF2708	0.66	-1.6
2,728,724	-		GFF2708	0.68	-1.1
2,728,729	-		GFF2708	0.69	-0.9
2,728,752	+		GFF2708	0.70	+0.7
2,728,767	+		GFF2708	0.71	-1.0
2,728,772	+		GFF2708	0.71	-0.8
2,728,772	+		GFF2708	0.71	-0.5
2,728,780	-		GFF2708	0.72	-0.6
2,728,782	+		GFF2708	0.72	-0.9
2,728,782	+		GFF2708	0.72	-0.5
2,728,782	+		GFF2708	0.72	-1.0
2,728,782	+		GFF2708	0.72	+0.4
2,728,782	+		GFF2708	0.72	+1.3
2,728,782	+		GFF2708	0.72	-0.0
2,728,782	+		GFF2708	0.72	-1.3
2,728,785	-		GFF2708	0.72	-1.5
2,728,790	-		GFF2708	0.73	+0.5
2,728,790	-		GFF2708	0.73	-0.5
2,728,790	-		GFF2708	0.73	-1.7
2,728,790	-		GFF2708	0.73	-1.3
2,728,790	-		GFF2708	0.73	-0.9
2,728,790	-		GFF2708	0.73	-1.4
2,728,790	-		GFF2708	0.73	-0.6
2,728,805	-		GFF2708	0.74	-1.3
2,728,806	+		GFF2708	0.74	+0.4
2,728,806	+		GFF2708	0.74	-2.3
2,728,819	+		GFF2708	0.75	+1.0
2,728,819	+		GFF2708	0.75	-1.3
2,728,822	-		GFF2708	0.75	-0.8
2,728,824	+		GFF2708	0.75	-0.3
2,728,826	+		GFF2708	0.75	-0.6
2,728,827	-		GFF2708	0.75	-0.0
2,728,827	-		GFF2708	0.75	+0.2
2,728,832	-		GFF2708	0.76	+0.1
2,728,906	-		GFF2708	0.81	+0.0
2,728,963	+		GFF2708	0.84	-0.8
2,728,963	+		GFF2708	0.84	-0.7
2,728,963	+		GFF2708	0.84	-0.6
2,728,963	+		GFF2708	0.84	+0.7
2,728,963	+		GFF2708	0.84	+0.5
2,728,971	-		GFF2708	0.85	+0.7
2,728,971	-		GFF2708	0.85	+0.6
2,728,988	+		GFF2708	0.86	+0.1
2,728,996	-		GFF2708	0.87	-1.1
2,729,008	-		GFF2708	0.88	-0.5
2,729,014	+		GFF2708	0.88	+0.1
2,729,022	+		GFF2708	0.88	+0.7
2,729,022	-		GFF2708	0.88	+1.2
2,729,096	-				-0.2
2,729,122	+				+1.0
2,729,172	+				-0.3
2,729,180	+				-0.4
2,729,183	-				-0.0
2,729,199	+				-1.2
2,729,207	+				-1.6
2,729,207	+				-1.1
2,729,207	-				-1.0
2,729,207	-				-1.7
2,729,207	-				-0.8
2,729,207	-				-1.1
2,729,207	-				+0.1
2,729,207	-				-1.3
2,729,215	-				+0.4
2,729,215	-				-1.2
2,729,215	-				+0.3
2,729,216	+				+0.6
2,729,223	+				-1.5
2,729,224	-				-0.1
2,729,231	-				-1.4
2,729,231	-				+0.2
2,729,248	+				-0.4
2,729,250	-				+0.3
2,729,258	+				+0.6
2,729,258	+				-0.3
2,729,259	+				+0.4
2,729,282	+				+0.9
2,729,308	-				-0.5
2,729,331	+				-1.4
2,729,363	+				-1.3
2,729,363	+				+0.1
2,729,371	-				+0.8
2,729,386	+				+0.6
2,729,393	-				-0.2
2,729,393	-				+0.9
2,729,393	-				+0.5
2,729,393	-				-0.1
2,729,394	-				-1.5
2,729,398	-				-0.6
2,729,403	-				-0.0
2,729,409	-				-0.2
2,729,415	+				-0.7
2,729,418	+				-1.2
2,729,420	+				-0.2
2,729,423	-				+0.6
2,729,428	-				+0.3
2,729,436	-				+0.1
2,729,452	+				-0.6
2,729,452	+				-1.3
2,729,460	-				-2.6
2,729,473	+				-0.7
2,729,473	+				-2.5
2,729,476	-				+0.0
2,729,481	-		GFF2709	0.10	-1.0
2,729,489	-		GFF2709	0.10	-2.2
2,729,496	+		GFF2709	0.11	-0.6
2,729,496	+		GFF2709	0.11	-0.3
2,729,499	+		GFF2709	0.11	+1.0
2,729,504	+		GFF2709	0.11	-1.1
2,729,504	-		GFF2709	0.11	+0.3
2,729,504	-		GFF2709	0.11	-0.2
2,729,509	+		GFF2709	0.11	+0.6
2,729,513	+		GFF2709	0.12	-0.5
2,729,518	-		GFF2709	0.12	-0.3
2,729,537	-		GFF2709	0.13	-0.5
2,729,552	-		GFF2709	0.14	-0.9
2,729,552	-		GFF2709	0.14	+0.1
2,729,554	+		GFF2709	0.14	+0.0
2,729,554	+		GFF2709	0.14	-2.4
2,729,554	+		GFF2709	0.14	-0.7
2,729,554	+		GFF2709	0.14	-0.6
2,729,554	+		GFF2709	0.14	-2.4
2,729,557	-		GFF2709	0.14	-2.3
2,729,562	-		GFF2709	0.14	+0.2
2,729,562	-		GFF2709	0.14	-0.6
2,729,562	-		GFF2709	0.14	-0.9
2,729,601	+		GFF2709	0.16	-0.9
2,729,636	+		GFF2709	0.18	+0.5
2,729,689	-		GFF2709	0.20	-0.6
2,729,693	+		GFF2709	0.21	-1.6
2,729,693	+		GFF2709	0.21	+0.6
2,729,698	+		GFF2709	0.21	-0.3
2,729,701	-		GFF2709	0.21	+0.3
2,729,701	-		GFF2709	0.21	-0.9
2,729,701	-		GFF2709	0.21	-0.0
2,729,701	-		GFF2709	0.21	+0.6
2,729,707	+		GFF2709	0.21	-1.0
2,729,707	+		GFF2709	0.21	-0.3
2,729,707	+		GFF2709	0.21	+0.6
2,729,715	+		GFF2709	0.22	-0.8
2,729,715	-		GFF2709	0.22	+0.3
2,729,715	-		GFF2709	0.22	-0.5
2,729,715	-		GFF2709	0.22	+1.0
2,729,715	-		GFF2709	0.22	-1.4
2,729,732	+		GFF2709	0.23	-1.7
2,729,763	+		GFF2709	0.24	-1.7
2,729,794	+		GFF2709	0.26	-0.6
2,729,849	+		GFF2709	0.28	-0.3
2,729,849	+		GFF2709	0.28	-1.5
2,729,850	-		GFF2709	0.28	-2.0
2,729,894	-		GFF2709	0.31	-0.3
2,729,925	-		GFF2709	0.32	+0.5
2,729,937	+		GFF2709	0.33	+0.2
2,729,955	-		GFF2709	0.34	+1.7
2,730,018	+		GFF2709	0.37	+1.4
2,730,018	+		GFF2709	0.37	-1.0
2,730,027	+		GFF2709	0.37	+1.1
2,730,027	+		GFF2709	0.37	-0.3
2,730,027	+		GFF2709	0.37	+0.4
2,730,107	-		GFF2709	0.41	-0.2
2,730,117	-		GFF2709	0.42	-1.3
2,730,118	+		GFF2709	0.42	+0.5
2,730,122	+		GFF2709	0.42	-0.1
2,730,125	+		GFF2709	0.42	-0.5
2,730,126	-		GFF2709	0.42	-0.4
2,730,164	+		GFF2709	0.44	-0.6
2,730,166	+		GFF2709	0.44	-1.7
2,730,172	-		GFF2709	0.44	+0.1
2,730,174	+		GFF2709	0.45	+0.5
2,730,180	-		GFF2709	0.45	-0.4
2,730,256	-		GFF2709	0.49	-0.9
2,730,290	+		GFF2709	0.50	-1.3
2,730,364	+		GFF2709	0.54	-0.6
2,730,364	+		GFF2709	0.54	-0.4
2,730,369	+		GFF2709	0.54	-1.0
2,730,411	+		GFF2709	0.56	-0.6
2,730,416	+		GFF2709	0.57	-0.9
2,730,467	+		GFF2709	0.59	+0.3
2,730,472	+		GFF2709	0.59	-0.8
2,730,482	+		GFF2709	0.60	-0.8
2,730,482	+		GFF2709	0.60	+0.1
2,730,482	+		GFF2709	0.60	+0.6
2,730,485	-		GFF2709	0.60	+1.0
2,730,490	-		GFF2709	0.60	+0.2
2,730,490	-		GFF2709	0.60	+0.4
2,730,490	-		GFF2709	0.60	+0.1
2,730,490	-		GFF2709	0.60	-0.7
2,730,513	-		GFF2709	0.61	+0.0
2,730,516	+		GFF2709	0.62	+0.4
2,730,520	-		GFF2709	0.62	-0.4
2,730,524	-		GFF2709	0.62	-0.3
2,730,524	-		GFF2709	0.62	-0.6
2,730,571	+		GFF2709	0.64	-1.9
2,730,600	+		GFF2709	0.66	+0.4
2,730,608	-		GFF2709	0.66	-1.5
2,730,623	-		GFF2709	0.67	-0.8
2,730,623	-		GFF2709	0.67	-0.1
2,730,679	+		GFF2709	0.70	-0.0
2,730,679	+		GFF2709	0.70	-0.5
2,730,708	-		GFF2709	0.71	+0.4
2,730,719	+		GFF2709	0.72	+0.7
2,730,719	+		GFF2709	0.72	-0.4
2,730,727	-		GFF2709	0.72	+0.0
2,730,738	+		GFF2709	0.73	+0.9
2,730,759	+		GFF2709	0.74	-1.9
2,730,773	+		GFF2709	0.74	-0.3
2,730,829	+		GFF2709	0.77	+0.4
2,730,837	-		GFF2709	0.78	-0.6
2,730,837	-		GFF2709	0.78	+0.0
2,730,837	-		GFF2709	0.78	+1.0
2,730,879	+		GFF2709	0.80	-0.8
2,730,887	-		GFF2709	0.80	-0.6
2,730,887	-		GFF2709	0.80	+0.8
2,730,887	-		GFF2709	0.80	+1.5
2,730,890	+		GFF2709	0.80	-1.1
2,730,898	-		GFF2709	0.81	+0.7
2,730,898	-		GFF2709	0.81	+2.0
2,730,922	-		GFF2709	0.82	-1.7
2,730,934	+		GFF2709	0.82	+0.6
2,730,959	-		GFF2709	0.84	-0.5
2,730,960	-		GFF2709	0.84	-0.6
2,730,978	-		GFF2709	0.85	-1.6
2,730,989	+		GFF2709	0.85	+0.9
2,730,989	+		GFF2709	0.85	-1.1
2,730,989	+		GFF2709	0.85	+0.2
2,730,989	+		GFF2709	0.85	+1.3
2,730,996	-		GFF2709	0.85	+0.5
2,730,996	-		GFF2709	0.85	+0.2
2,730,997	-		GFF2709	0.85	-0.4
2,731,016	+		GFF2709	0.86	+0.0
2,731,022	-		GFF2709	0.87	+1.4
2,731,026	+		GFF2709	0.87	-0.3
2,731,026	+		GFF2709	0.87	-0.7
2,731,026	+		GFF2709	0.87	-0.2
2,731,026	+		GFF2709	0.87	-2.0
2,731,026	+		GFF2709	0.87	-1.0
2,731,026	+		GFF2709	0.87	+0.5
2,731,026	+		GFF2709	0.87	+0.3
2,731,026	+		GFF2709	0.87	+0.4
2,731,026	+		GFF2709	0.87	-0.6
2,731,026	+		GFF2709	0.87	-1.4
2,731,026	+		GFF2709	0.87	-0.7
2,731,026	+		GFF2709	0.87	-2.0
2,731,026	+		GFF2709	0.87	-1.1
2,731,026	+		GFF2709	0.87	+0.9
2,731,034	-		GFF2709	0.87	-1.1
2,731,034	-		GFF2709	0.87	-0.5
2,731,034	-		GFF2709	0.87	-0.7
2,731,034	-		GFF2709	0.87	-1.3
2,731,034	-		GFF2709	0.87	-0.4
2,731,034	-		GFF2709	0.87	-0.3
2,731,034	-		GFF2709	0.87	-0.9
2,731,034	-		GFF2709	0.87	-0.7
2,731,034	-		GFF2709	0.87	-0.6
2,731,034	-		GFF2709	0.87	-0.0
2,731,034	-		GFF2709	0.87	-0.7
2,731,034	-		GFF2709	0.87	-1.0
2,731,034	-		GFF2709	0.87	-0.6
2,731,034	-		GFF2709	0.87	+0.6
2,731,034	-		GFF2709	0.87	+0.0
2,731,034	-		GFF2709	0.87	-2.0
2,731,034	-		GFF2709	0.87	-1.1
2,731,044	-		GFF2709	0.88	-1.3
2,731,050	+		GFF2709	0.88	+0.6
2,731,052	-		GFF2709	0.88	-1.7
2,731,058	-		GFF2709	0.89	+0.4
2,731,058	-		GFF2709	0.89	-1.0
2,731,067	+		GFF2709	0.89	-0.3
2,731,141	+				+0.1
2,731,156	+				-1.6
2,731,164	-				-0.5
2,731,200	+				+0.0
2,731,200	+				-0.5
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