Strain Fitness in Sphingobium sp. HT1-2 around GFF2681

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,701,490	+		GFF2680	0.70	+2.0
2,701,490	+		GFF2680	0.70	-1.1
2,701,490	+		GFF2680	0.70	+0.5
2,701,495	+		GFF2680	0.70	-2.3
2,701,495	+		GFF2680	0.70	+0.4
2,701,495	+		GFF2680	0.70	-0.3
2,701,495	+		GFF2680	0.70	-0.1
2,701,495	+		GFF2680	0.70	+0.7
2,701,495	+		GFF2680	0.70	-0.6
2,701,498	-		GFF2680	0.70	-0.2
2,701,503	-		GFF2680	0.71	+0.4
2,701,503	-		GFF2680	0.71	+0.4
2,701,503	-		GFF2680	0.71	+1.3
2,701,503	-		GFF2680	0.71	+0.4
2,701,503	-		GFF2680	0.71	-0.7
2,701,503	-		GFF2680	0.71	+1.1
2,701,503	-		GFF2680	0.71	+0.5
2,701,503	-		GFF2680	0.71	-1.2
2,701,503	-		GFF2680	0.71	-1.7
2,701,503	-		GFF2680	0.71	-0.6
2,701,503	-		GFF2680	0.71	+0.7
2,701,503	-		GFF2680	0.71	+1.6
2,701,503	-		GFF2680	0.71	-1.1
2,701,503	-		GFF2680	0.71	+0.1
2,701,503	-		GFF2680	0.71	+0.1
2,701,503	-		GFF2680	0.71	-0.3
2,701,503	-		GFF2680	0.71	+0.9
2,701,519	+		GFF2680	0.71	+0.0
2,701,519	+		GFF2680	0.71	+0.3
2,701,527	-		GFF2680	0.72	-0.8
2,701,527	-		GFF2680	0.72	+0.9
2,701,552	-		GFF2680	0.73	-0.2
2,701,552	-		GFF2680	0.73	-0.4
2,701,591	-		GFF2680	0.75	-0.1
2,701,594	+		GFF2680	0.75	-0.7
2,701,600	+		GFF2680	0.76	-0.8
2,701,600	+		GFF2680	0.76	-1.9
2,701,600	+		GFF2680	0.76	-0.3
2,701,607	+		GFF2680	0.76	-0.6
2,701,608	-		GFF2680	0.76	-0.9
2,701,608	-		GFF2680	0.76	-0.4
2,701,620	+		GFF2680	0.77	+0.1
2,701,632	-		GFF2680	0.77	+0.1
2,701,657	+		GFF2680	0.79	-1.5
2,701,657	+		GFF2680	0.79	-0.6
2,701,665	-		GFF2680	0.79	+1.7
2,701,674	+		GFF2680	0.80	-0.1
2,701,682	-		GFF2680	0.80	+0.1
2,701,689	-		GFF2680	0.81	-0.1
2,701,703	-		GFF2680	0.81	+0.0
2,701,705	+		GFF2680	0.81	-0.3
2,701,705	+		GFF2680	0.81	+0.6
2,701,713	-		GFF2680	0.82	-0.7
2,701,750	+		GFF2680	0.84	-0.9
2,701,849	+		GFF2680	0.89	-0.5
2,701,857	-		GFF2680	0.90	-1.2
2,701,857	-		GFF2680	0.90	-1.0
2,701,874	+				+1.1
2,701,876	+				-0.7
2,701,902	-				+0.0
2,701,902	-				+0.5
2,701,915	+				+1.1
2,701,923	+				+0.7
2,701,931	-				-1.0
2,701,936	+				-1.1
2,701,954	-				+0.7
2,701,983	-				-0.5
2,701,988	+				+1.4
2,701,991	-				-0.7
2,701,994	+				-0.8
2,701,994	+				-0.3
2,702,011	-				-0.5
2,702,020	+				+0.1
2,702,040	+				+0.3
2,702,045	+				+0.5
2,702,045	+				+0.7
2,702,045	+				-0.3
2,702,045	+				-1.2
2,702,045	+				-0.1
2,702,045	+				-0.3
2,702,045	+				+0.3
2,702,045	+				+0.7
2,702,045	+				-0.7
2,702,045	+				-1.1
2,702,053	-				+0.7
2,702,053	-				+0.7
2,702,053	-				-2.4
2,702,053	-				+0.7
2,702,053	-				+1.0
2,702,053	-				-0.3
2,702,053	-				-0.5
2,702,053	-				-0.9
2,702,053	-				-0.9
2,702,084	-				+1.0
2,702,091	+				-1.3
2,702,091	+				-1.3
2,702,094	-				-1.0
2,702,094	-				-1.4
2,702,094	-				-0.3
2,702,106	+				+0.3
2,702,111	+				-0.8
2,702,111	+				+0.6
2,702,111	+				-0.2
2,702,119	-				+0.2
2,702,119	-				+0.3
2,702,119	-				+0.7
2,702,119	-				-0.7
2,702,119	-				+1.6
2,702,119	-				+0.1
2,702,119	-				-0.1
2,702,129	-				-0.2
2,702,136	-				-0.2
2,702,148	+				+0.2
2,702,148	+				-1.4
2,702,148	+				-0.4
2,702,148	+				-1.8
2,702,148	+				-0.5
2,702,148	+				-0.9
2,702,148	+				-1.3
2,702,148	+				-0.1
2,702,149	+				+1.9
2,702,156	-				+1.0
2,702,156	-				-0.3
2,702,156	-				-1.0
2,702,156	-				+1.0
2,702,156	-				+0.5
2,702,156	-				-1.1
2,702,156	-				-0.2
2,702,156	-				+0.6
2,702,166	-				+0.6
2,702,167	+				+0.5
2,702,167	+				-0.9
2,702,170	-				-0.8
2,702,175	-				+0.4
2,702,175	-				-0.9
2,702,175	-				-0.6
2,702,177	+				-0.1
2,702,185	-				-0.7
2,702,205	+				-1.5
2,702,205	+				-1.0
2,702,213	-				+1.5
2,702,213	-				-0.0
2,702,222	-				+1.2
2,702,223	-				-1.6
2,702,230	+				-1.0
2,702,230	+				-2.0
2,702,231	+				-0.3
2,702,237	-				+0.5
2,702,238	-				+0.6
2,702,238	-				+0.8
2,702,277	-				+1.0
2,702,289	+				-1.1
2,702,301	+				+0.1
2,702,310	+				+0.2
2,702,320	+				+0.3
2,702,320	+				-0.3
2,702,320	-				-0.7
2,702,322	+				-1.2
2,702,324	+				-0.6
2,702,328	-				-1.2
2,702,328	-				+0.9
2,702,330	-				+0.1
2,702,332	+				+0.4
2,702,335	-				+0.2
2,702,346	+				+0.4
2,702,376	-				-0.3
2,702,380	+				-1.1
2,702,389	-				-0.7
2,702,392	+				+0.5
2,702,392	+				-0.2
2,702,392	+				-0.4
2,702,457	-				-0.1
2,702,460	-				-2.2
2,702,460	-				+0.7
2,702,460	-				-1.1
2,702,465	+				-0.4
2,702,470	+				-0.3
2,702,490	-				+1.5
2,702,542	+		GFF2681	0.29	-0.5
2,702,550	+		GFF2681	0.32	-0.5
2,702,550	+		GFF2681	0.32	-0.3
2,702,553	-		GFF2681	0.34	-0.9
2,702,555	+		GFF2681	0.35	+0.9
2,702,555	+		GFF2681	0.35	+0.2
2,702,563	-		GFF2681	0.38	+0.1
2,702,572	+		GFF2681	0.42	-0.9
2,702,580	-		GFF2681	0.46	-0.8
2,702,589	-		GFF2681	0.50	-1.4
2,702,589	-		GFF2681	0.50	-0.2
2,702,589	-		GFF2681	0.50	-1.2
2,702,597	+		GFF2681	0.54	-1.6
2,702,640	+		GFF2681	0.74	-0.1
2,702,648	-		GFF2681	0.77	-0.5
2,702,648	-		GFF2681	0.77	+0.1
2,702,648	-		GFF2681	0.77	-0.7
2,702,649	-		GFF2681	0.78	+0.7
2,702,659	-		GFF2681	0.82	+0.1
2,702,684	-				-0.9
2,702,686	+				+2.3
2,702,691	+				+0.4
2,702,698	+				-1.3
2,702,699	-				-0.6
2,702,699	-				+1.0
2,702,706	-				+1.2
2,702,764	+				-0.7
2,702,764	+				+0.1
2,702,764	+				-0.5
2,702,789	+				+0.3
2,702,789	+				-1.1
2,702,794	+				+0.4
2,702,794	+				-0.8
2,702,794	+				-0.2
2,702,794	+				+0.7
2,702,794	+				-1.2
2,702,794	+				+1.3
2,702,794	+				-0.7
2,702,794	+				-1.2
2,702,794	+				+2.5
2,702,794	+				+0.7
2,702,794	+				-0.2
2,702,794	+				-0.8
2,702,795	-				-0.1
2,702,802	-				-1.3
2,702,802	-				-0.3
2,702,802	-				-0.8
2,702,802	-				+0.2
2,702,802	-				-0.1
2,702,802	-				+0.8
2,702,802	-				-0.4
2,702,802	-				+0.8
2,702,802	-				-1.2
2,702,802	-				-1.8
2,702,802	-				+0.6
2,702,802	-				+0.4
2,702,802	-				+0.2
2,702,802	-				+1.1
2,702,802	-				-0.1
2,702,802	-				-0.6
2,702,802	-				-0.4
2,702,802	-				-1.5
2,702,802	-				+0.6
2,702,809	+				+0.4
2,702,809	+				-1.6
2,702,809	+				-0.6
2,702,809	+				-0.5
2,702,809	+				-2.1
2,702,809	+				-1.3
2,702,817	-				-0.6
2,702,817	-				-0.1
2,702,817	-				+1.0
2,702,817	-				-0.7
2,702,817	-				-1.7
2,702,817	-				-0.3
2,702,857	+				-0.7
2,702,859	-				+0.5
2,702,869	+				-1.5
2,702,869	+				+0.4
2,702,869	+				+1.5
2,702,869	+				-0.6
2,702,870	-				+0.9
2,702,877	-				-0.0
2,702,879	+				-2.1
2,702,903	-				-0.6
2,702,909	+				-0.7
2,702,922	-				-1.5
2,702,929	+				-1.8
2,702,929	+				+0.7
2,702,929	+				-0.1
2,702,931	+				-0.9
2,702,931	+				-0.3
2,702,931	+				-1.0
2,702,939	-				-1.0
2,702,944	+				-1.7
2,702,952	-				-0.1
2,702,954	-				-0.7
2,702,958	+				-0.6
2,702,959	-				-1.8
2,702,966	-				-1.1
2,702,969	+				+0.0
2,702,999	+				-0.6
2,703,020	+				-0.9
2,703,023	-				+0.9
2,703,025	+				-0.3
2,703,025	+				-0.1
2,703,033	-				-1.6
2,703,035	+				-0.8
2,703,043	+				-0.6
2,703,058	+				-0.1
2,703,094	+				-1.4
2,703,112	-				-0.3
2,703,129	+				-0.5
2,703,129	+				+0.0
2,703,137	-				+0.9
2,703,175	+				+1.3
2,703,215	-				+0.8
2,703,241	+				+0.1
2,703,247	-				+0.7
2,703,264	-				+0.7
2,703,266	-				-0.7
2,703,268	+				+0.6
2,703,273	-				-1.9
2,703,289	+				-0.8
2,703,289	+				-1.2
2,703,297	-				+0.4
2,703,297	-				-0.1
2,703,301	+		GFF2682	0.10	-0.5
2,703,303	+		GFF2682	0.10	-0.2
2,703,303	+		GFF2682	0.10	+0.5
2,703,303	+		GFF2682	0.10	-0.3
2,703,359	-		GFF2682	0.16	-0.4
2,703,363	-		GFF2682	0.17	-1.6
2,703,383	-		GFF2682	0.19	-0.6
2,703,384	+		GFF2682	0.19	+0.1
2,703,384	+		GFF2682	0.19	-0.7
2,703,384	+		GFF2682	0.19	-0.4
2,703,392	-		GFF2682	0.20	+0.6
2,703,401	+		GFF2682	0.21	+0.1
2,703,409	-		GFF2682	0.21	-1.0
2,703,415	+		GFF2682	0.22	+0.5
2,703,415	+		GFF2682	0.22	-0.9
2,703,420	+		GFF2682	0.23	-0.5
2,703,420	+		GFF2682	0.23	-1.1
2,703,423	-		GFF2682	0.23	-0.5
2,703,438	+		GFF2682	0.24	+0.0
2,703,438	+		GFF2682	0.24	+1.3
2,703,438	+		GFF2682	0.24	+0.4
2,703,446	-		GFF2682	0.25	-0.4
2,703,446	-		GFF2682	0.25	-0.2
2,703,448	+		GFF2682	0.25	+0.6
2,703,448	+		GFF2682	0.25	-0.1
2,703,448	+		GFF2682	0.25	+0.8
2,703,448	+		GFF2682	0.25	+1.4
2,703,448	+		GFF2682	0.25	-0.3
2,703,454	-		GFF2682	0.26	+0.9
2,703,456	-		GFF2682	0.26	-1.1
2,703,456	-		GFF2682	0.26	-1.2
2,703,456	-		GFF2682	0.26	-1.1
2,703,456	-		GFF2682	0.26	+0.6
2,703,456	-		GFF2682	0.26	-1.3
2,703,456	-		GFF2682	0.26	-0.2
2,703,458	+		GFF2682	0.27	+0.1
2,703,485	+		GFF2682	0.29	-0.6
2,703,490	+		GFF2682	0.30	-0.2
2,703,491	+		GFF2682	0.30	+1.4
2,703,493	-		GFF2682	0.30	+0.9
2,703,493	-		GFF2682	0.30	-0.3
2,703,496	+		GFF2682	0.30	-0.6
2,703,504	-		GFF2682	0.31	+0.9
2,703,504	-		GFF2682	0.31	-1.0
2,703,511	+		GFF2682	0.32	-0.3
2,703,511	+		GFF2682	0.32	+1.0
2,703,511	+		GFF2682	0.32	-1.1
2,703,511	+		GFF2682	0.32	+0.9
2,703,511	+		GFF2682	0.32	+0.5
2,703,511	+		GFF2682	0.32	-0.3
2,703,511	+		GFF2682	0.32	-1.1
2,703,511	+		GFF2682	0.32	-1.3
2,703,511	+		GFF2682	0.32	-0.7
2,703,511	+		GFF2682	0.32	-0.2
2,703,511	+		GFF2682	0.32	-0.1
2,703,511	+		GFF2682	0.32	-1.7
2,703,511	+		GFF2682	0.32	-1.7
2,703,511	+		GFF2682	0.32	-1.1
2,703,511	+		GFF2682	0.32	+0.2
2,703,511	+		GFF2682	0.32	+0.4
2,703,511	+		GFF2682	0.32	-0.8
2,703,511	+		GFF2682	0.32	-1.9
2,703,511	+		GFF2682	0.32	-0.5
2,703,511	+		GFF2682	0.32	+0.5
2,703,511	+		GFF2682	0.32	-1.9
2,703,511	+		GFF2682	0.32	+0.1
2,703,511	+		GFF2682	0.32	-0.4
2,703,511	+		GFF2682	0.32	-0.8
2,703,511	+		GFF2682	0.32	-2.2
2,703,511	+		GFF2682	0.32	-1.9
2,703,511	+		GFF2682	0.32	+0.4
2,703,511	+		GFF2682	0.32	-0.3
2,703,511	+		GFF2682	0.32	+0.3
2,703,511	+		GFF2682	0.32	-1.7
2,703,511	+		GFF2682	0.32	+0.4
2,703,511	+		GFF2682	0.32	-1.1
2,703,519	-		GFF2682	0.33	+0.4
2,703,519	-		GFF2682	0.33	+0.3
2,703,519	-		GFF2682	0.33	-1.1
2,703,519	-		GFF2682	0.33	+0.7
2,703,519	-		GFF2682	0.33	-1.7
2,703,519	-		GFF2682	0.33	+0.4
2,703,519	-		GFF2682	0.33	-0.1
2,703,519	-		GFF2682	0.33	+0.2
2,703,519	-		GFF2682	0.33	-0.8
2,703,519	-		GFF2682	0.33	-2.3
2,703,519	-		GFF2682	0.33	-0.9
2,703,519	-		GFF2682	0.33	-0.6
2,703,519	-		GFF2682	0.33	-0.2
2,703,519	-		GFF2682	0.33	-1.5
2,703,519	-		GFF2682	0.33	+0.5
2,703,519	-		GFF2682	0.33	+0.1
2,703,519	-		GFF2682	0.33	-0.6
2,703,519	-		GFF2682	0.33	+0.2
2,703,519	-		GFF2682	0.33	-1.9
2,703,519	-		GFF2682	0.33	-0.3
2,703,519	-		GFF2682	0.33	-0.9
2,703,519	-		GFF2682	0.33	+0.4
2,703,519	-		GFF2682	0.33	+1.9
2,703,519	-		GFF2682	0.33	-0.1
2,703,519	-		GFF2682	0.33	-0.7
2,703,519	-		GFF2682	0.33	-0.7
2,703,519	-		GFF2682	0.33	-0.3
2,703,519	-		GFF2682	0.33	-0.8
2,703,526	-		GFF2682	0.34	-1.5
2,703,547	+		GFF2682	0.36	-1.0
2,703,562	-		GFF2682	0.37	+0.7
2,703,574	+		GFF2682	0.39	+0.4
2,703,575	+		GFF2682	0.39	+0.4
2,703,583	-		GFF2682	0.39	-1.3
2,703,583	-		GFF2682	0.39	-0.1
2,703,583	-		GFF2682	0.39	-1.6
2,703,653	-		GFF2682	0.47	-1.9
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2,703,680	+		GFF2682	0.49	-0.7
2,703,680	+		GFF2682	0.49	+1.7
2,703,680	+		GFF2682	0.49	+0.1
2,703,680	+		GFF2682	0.49	-0.3
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2,703,682	+		GFF2682	0.50	-1.0
2,703,688	-		GFF2682	0.50	-1.5
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2,703,690	+		GFF2682	0.51	-0.5
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