Strain Fitness in Sphingobium sp. HT1-2 around GFF2680

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,699,210	-				-1.3
2,699,210	-				+0.0
2,699,210	-				-1.1
2,699,216	+				+0.3
2,699,216	+				-1.3
2,699,223	+				+0.2
2,699,223	+				-1.3
2,699,226	-				+0.5
2,699,235	+				-0.6
2,699,235	+				+0.8
2,699,241	+				+0.3
2,699,244	-				-1.2
2,699,248	-				+1.0
2,699,248	-				+0.2
2,699,251	-				-1.4
2,699,257	+				-0.1
2,699,257	+				+0.8
2,699,257	+				+0.5
2,699,257	+				+0.1
2,699,265	-				+0.4
2,699,265	-				-1.6
2,699,265	-				-0.1
2,699,265	-				-0.8
2,699,265	-				-2.1
2,699,265	-				-1.3
2,699,272	+				+0.7
2,699,280	-				-0.1
2,699,306	+				+0.1
2,699,308	-				+3.0
2,699,308	-				-0.8
2,699,313	+				+0.3
2,699,339	+		GFF2679	0.10	-1.1
2,699,339	+		GFF2679	0.10	+0.2
2,699,347	-		GFF2679	0.11	-1.8
2,699,371	+		GFF2679	0.13	+0.5
2,699,374	-		GFF2679	0.14	-0.5
2,699,380	+		GFF2679	0.14	+1.0
2,699,380	+		GFF2679	0.14	-0.1
2,699,381	+		GFF2679	0.14	-1.2
2,699,388	-		GFF2679	0.15	-0.8
2,699,392	-		GFF2679	0.16	-0.6
2,699,398	-		GFF2679	0.16	-0.6
2,699,399	-		GFF2679	0.16	-0.2
2,699,403	+		GFF2679	0.17	-0.1
2,699,413	+		GFF2679	0.18	-0.2
2,699,421	-		GFF2679	0.19	-0.3
2,699,434	+		GFF2679	0.20	+0.3
2,699,434	+		GFF2679	0.20	-1.9
2,699,442	-		GFF2679	0.21	-0.3
2,699,447	+		GFF2679	0.21	+0.1
2,699,468	+		GFF2679	0.24	-1.3
2,699,517	+		GFF2679	0.29	+1.6
2,699,533	+		GFF2679	0.30	-0.6
2,699,541	-		GFF2679	0.31	+2.2
2,699,541	-		GFF2679	0.31	-0.5
2,699,545	+		GFF2679	0.32	+0.4
2,699,552	+		GFF2679	0.32	-0.1
2,699,553	-		GFF2679	0.32	+0.3
2,699,553	-		GFF2679	0.32	-0.2
2,699,553	-		GFF2679	0.32	-0.2
2,699,553	-		GFF2679	0.32	-0.5
2,699,555	+		GFF2679	0.33	-0.5
2,699,561	-		GFF2679	0.33	+0.5
2,699,563	-		GFF2679	0.34	-0.6
2,699,563	-		GFF2679	0.34	-1.5
2,699,568	-		GFF2679	0.34	-2.3
2,699,573	-		GFF2679	0.35	+0.3
2,699,582	+		GFF2679	0.36	-2.1
2,699,582	+		GFF2679	0.36	+0.9
2,699,587	+		GFF2679	0.36	+0.3
2,699,590	-		GFF2679	0.36	-1.1
2,699,595	-		GFF2679	0.37	-1.7
2,699,600	+		GFF2679	0.37	-0.8
2,699,601	+		GFF2679	0.38	+0.9
2,699,602	+		GFF2679	0.38	-0.6
2,699,606	+		GFF2679	0.38	+0.8
2,699,607	+		GFF2679	0.38	-0.3
2,699,609	-		GFF2679	0.38	-0.9
2,699,614	+		GFF2679	0.39	-1.5
2,699,614	-		GFF2679	0.39	+0.5
2,699,624	+		GFF2679	0.40	-0.4
2,699,639	-		GFF2679	0.42	-1.3
2,699,643	-		GFF2679	0.42	-0.8
2,699,643	-		GFF2679	0.42	-0.9
2,699,651	-		GFF2679	0.43	+0.0
2,699,653	-		GFF2679	0.43	+0.7
2,699,658	+		GFF2679	0.44	-0.7
2,699,658	+		GFF2679	0.44	+0.2
2,699,666	-		GFF2679	0.44	-0.5
2,699,666	-		GFF2679	0.44	-0.3
2,699,675	+		GFF2679	0.45	-0.3
2,699,723	-		GFF2679	0.50	-0.8
2,699,734	-		GFF2679	0.52	+0.8
2,699,749	-		GFF2679	0.53	-0.1
2,699,753	-		GFF2679	0.54	-0.3
2,699,757	-		GFF2679	0.54	+0.0
2,699,763	-		GFF2679	0.55	-0.5
2,699,764	-		GFF2679	0.55	-0.3
2,699,773	+		GFF2679	0.56	-0.9
2,699,773	+		GFF2679	0.56	-0.1
2,699,779	+		GFF2679	0.56	+0.5
2,699,825	+		GFF2679	0.61	-1.7
2,699,825	+		GFF2679	0.61	+0.2
2,699,825	-		GFF2679	0.61	-0.2
2,699,833	-		GFF2679	0.62	+0.8
2,699,833	-		GFF2679	0.62	+0.7
2,699,833	-		GFF2679	0.62	-1.1
2,699,834	-		GFF2679	0.62	+0.5
2,699,835	+		GFF2679	0.62	-0.2
2,699,838	-		GFF2679	0.62	-1.1
2,699,849	-		GFF2679	0.64	-1.1
2,699,855	+		GFF2679	0.64	+0.1
2,699,855	+		GFF2679	0.64	-1.2
2,699,860	+		GFF2679	0.65	-1.0
2,699,860	+		GFF2679	0.65	-1.4
2,699,861	-		GFF2679	0.65	+0.5
2,699,863	-		GFF2679	0.65	-0.9
2,699,865	+		GFF2679	0.65	-2.0
2,699,869	-		GFF2679	0.66	-1.7
2,699,888	-		GFF2679	0.68	+0.4
2,699,913	-		GFF2679	0.70	-0.8
2,699,916	+		GFF2679	0.71	-0.8
2,699,924	-		GFF2679	0.72	-1.1
2,699,928	+		GFF2679	0.72	-1.1
2,699,936	+		GFF2679	0.73	-0.7
2,699,994	+		GFF2679	0.79	+0.4
2,700,018	-		GFF2679	0.81	+0.3
2,700,041	-		GFF2679	0.84	+0.7
2,700,083	+		GFF2679	0.88	-0.2
2,700,114	+				-0.6
2,700,122	-				+0.7
2,700,122	-				+0.0
2,700,126	+				+0.0
2,700,126	+				+0.5
2,700,134	-				-1.3
2,700,134	-				-1.1
2,700,134	-				-0.5
2,700,134	-				-0.8
2,700,134	-				-1.5
2,700,147	+				+0.1
2,700,163	+				-2.2
2,700,163	+				-0.1
2,700,182	+				-0.6
2,700,216	+				+0.0
2,700,234	+				-0.2
2,700,236	+				-0.9
2,700,242	-				-0.3
2,700,254	+				-0.1
2,700,279	-				+0.4
2,700,282	+				-1.1
2,700,285	-				-1.0
2,700,298	+				+0.5
2,700,306	-				-0.6
2,700,306	-				-0.3
2,700,306	-				+1.1
2,700,306	-				-0.6
2,700,308	+				-1.1
2,700,314	+				-0.3
2,700,322	-				-0.7
2,700,370	+				-0.8
2,700,394	+		GFF2680	0.11	+0.2
2,700,396	+		GFF2680	0.11	-1.0
2,700,396	-		GFF2680	0.11	-1.1
2,700,402	-		GFF2680	0.11	+0.6
2,700,409	-		GFF2680	0.12	-1.7
2,700,420	+		GFF2680	0.12	-1.6
2,700,420	+		GFF2680	0.12	-0.3
2,700,420	+		GFF2680	0.12	-1.7
2,700,420	+		GFF2680	0.12	-1.6
2,700,420	+		GFF2680	0.12	-1.2
2,700,420	+		GFF2680	0.12	+0.5
2,700,420	+		GFF2680	0.12	-1.6
2,700,420	+		GFF2680	0.12	+0.7
2,700,420	+		GFF2680	0.12	-1.0
2,700,420	+		GFF2680	0.12	-0.4
2,700,420	+		GFF2680	0.12	-0.7
2,700,420	+		GFF2680	0.12	+0.1
2,700,420	+		GFF2680	0.12	-1.2
2,700,420	+		GFF2680	0.12	-0.9
2,700,420	+		GFF2680	0.12	-1.0
2,700,420	+		GFF2680	0.12	-0.2
2,700,420	+		GFF2680	0.12	-1.0
2,700,425	+		GFF2680	0.13	-0.7
2,700,425	+		GFF2680	0.13	-0.1
2,700,425	+		GFF2680	0.13	+1.1
2,700,425	+		GFF2680	0.13	-0.9
2,700,425	+		GFF2680	0.13	+0.3
2,700,428	-		GFF2680	0.13	-0.3
2,700,428	-		GFF2680	0.13	+0.6
2,700,428	-		GFF2680	0.13	+0.9
2,700,428	-		GFF2680	0.13	-0.1
2,700,428	-		GFF2680	0.13	+0.1
2,700,428	-		GFF2680	0.13	-0.3
2,700,428	-		GFF2680	0.13	-0.7
2,700,428	-		GFF2680	0.13	+0.7
2,700,433	-		GFF2680	0.13	+0.2
2,700,445	+		GFF2680	0.14	-1.0
2,700,448	-		GFF2680	0.14	-0.6
2,700,458	-		GFF2680	0.14	-0.8
2,700,483	+		GFF2680	0.16	-0.1
2,700,498	+		GFF2680	0.17	-0.6
2,700,503	+		GFF2680	0.17	+0.9
2,700,503	+		GFF2680	0.17	+0.1
2,700,508	+		GFF2680	0.17	-2.1
2,700,508	+		GFF2680	0.17	-0.1
2,700,511	-		GFF2680	0.17	-1.6
2,700,511	-		GFF2680	0.17	-0.6
2,700,513	+		GFF2680	0.17	+0.1
2,700,513	+		GFF2680	0.17	-1.0
2,700,513	+		GFF2680	0.17	-0.4
2,700,513	+		GFF2680	0.17	-0.9
2,700,513	+		GFF2680	0.17	-1.4
2,700,513	+		GFF2680	0.17	+0.5
2,700,513	+		GFF2680	0.17	-0.8
2,700,513	+		GFF2680	0.17	+0.6
2,700,514	-		GFF2680	0.17	-0.6
2,700,516	-		GFF2680	0.17	+1.6
2,700,521	-		GFF2680	0.18	+0.1
2,700,521	-		GFF2680	0.18	+0.8
2,700,521	-		GFF2680	0.18	+0.5
2,700,521	-		GFF2680	0.18	+0.3
2,700,521	-		GFF2680	0.18	-0.8
2,700,521	-		GFF2680	0.18	+0.7
2,700,521	-		GFF2680	0.18	-0.7
2,700,521	-		GFF2680	0.18	-2.3
2,700,527	+		GFF2680	0.18	+0.4
2,700,535	-		GFF2680	0.18	-0.4
2,700,550	+		GFF2680	0.19	-2.0
2,700,555	+		GFF2680	0.20	+0.6
2,700,560	+		GFF2680	0.20	-0.3
2,700,560	+		GFF2680	0.20	+0.4
2,700,560	+		GFF2680	0.20	+0.4
2,700,560	+		GFF2680	0.20	+0.9
2,700,560	+		GFF2680	0.20	-0.5
2,700,560	+		GFF2680	0.20	-0.9
2,700,560	+		GFF2680	0.20	-1.7
2,700,568	-		GFF2680	0.20	-0.6
2,700,579	+		GFF2680	0.21	-0.5
2,700,587	+		GFF2680	0.21	-0.6
2,700,587	-		GFF2680	0.21	-2.1
2,700,587	-		GFF2680	0.21	-2.8
2,700,595	+		GFF2680	0.22	+1.0
2,700,595	-		GFF2680	0.22	-1.9
2,700,597	-		GFF2680	0.22	-0.6
2,700,615	+		GFF2680	0.23	-0.3
2,700,615	+		GFF2680	0.23	+0.1
2,700,615	+		GFF2680	0.23	+0.4
2,700,623	-		GFF2680	0.23	-1.1
2,700,623	-		GFF2680	0.23	-0.9
2,700,623	-		GFF2680	0.23	+0.3
2,700,623	-		GFF2680	0.23	-1.9
2,700,623	-		GFF2680	0.23	-1.7
2,700,625	+		GFF2680	0.23	-0.1
2,700,628	-		GFF2680	0.23	-1.0
2,700,628	-		GFF2680	0.23	+0.3
2,700,660	+		GFF2680	0.25	+0.0
2,700,660	+		GFF2680	0.25	+0.1
2,700,665	+		GFF2680	0.25	-1.3
2,700,668	-		GFF2680	0.26	-1.6
2,700,692	+		GFF2680	0.27	+0.3
2,700,692	+		GFF2680	0.27	-0.5
2,700,703	+		GFF2680	0.28	-0.5
2,700,710	-		GFF2680	0.28	-1.4
2,700,711	+		GFF2680	0.28	+0.2
2,700,741	+		GFF2680	0.30	+0.2
2,700,741	+		GFF2680	0.30	+1.4
2,700,741	+		GFF2680	0.30	-0.3
2,700,741	+		GFF2680	0.30	-1.5
2,700,744	-		GFF2680	0.30	+0.3
2,700,744	-		GFF2680	0.30	-0.6
2,700,749	-		GFF2680	0.30	+0.1
2,700,749	-		GFF2680	0.30	-1.6
2,700,751	+		GFF2680	0.30	-1.0
2,700,762	+		GFF2680	0.31	-1.5
2,700,764	-		GFF2680	0.31	-0.1
2,700,770	+		GFF2680	0.31	+0.9
2,700,770	-		GFF2680	0.31	-0.3
2,700,780	+		GFF2680	0.32	+0.4
2,700,793	-		GFF2680	0.32	-0.7
2,700,795	+		GFF2680	0.32	-0.9
2,700,813	+		GFF2680	0.33	+0.5
2,700,821	-		GFF2680	0.34	-0.4
2,700,821	-		GFF2680	0.34	-1.3
2,700,828	+		GFF2680	0.34	+0.4
2,700,863	-		GFF2680	0.36	-2.7
2,700,869	-		GFF2680	0.36	-0.2
2,700,882	+		GFF2680	0.37	-0.9
2,700,892	+		GFF2680	0.38	+0.1
2,700,892	+		GFF2680	0.38	+0.5
2,700,897	+		GFF2680	0.38	-1.5
2,700,897	+		GFF2680	0.38	+0.2
2,700,897	+		GFF2680	0.38	-0.8
2,700,900	-		GFF2680	0.38	+1.0
2,700,900	-		GFF2680	0.38	-0.8
2,700,905	-		GFF2680	0.38	-0.2
2,700,905	-		GFF2680	0.38	-0.9
2,700,905	-		GFF2680	0.38	+1.3
2,700,914	-		GFF2680	0.39	-0.8
2,700,922	-		GFF2680	0.39	+0.7
2,700,929	+		GFF2680	0.40	-0.6
2,700,929	+		GFF2680	0.40	-1.2
2,700,931	+		GFF2680	0.40	-0.9
2,700,937	-		GFF2680	0.40	+0.7
2,700,937	-		GFF2680	0.40	-0.5
2,700,937	-		GFF2680	0.40	+1.2
2,700,937	-		GFF2680	0.40	+1.0
2,700,937	-		GFF2680	0.40	+0.4
2,700,947	-		GFF2680	0.41	-1.8
2,700,947	-		GFF2680	0.41	-1.4
2,700,947	-		GFF2680	0.41	-0.8
2,700,947	-		GFF2680	0.41	+0.4
2,700,955	-		GFF2680	0.41	-2.1
2,700,960	+		GFF2680	0.41	+0.2
2,700,968	+		GFF2680	0.42	-1.8
2,700,982	+		GFF2680	0.43	+1.1
2,700,989	+		GFF2680	0.43	-1.4
2,700,990	+		GFF2680	0.43	-1.5
2,700,990	-		GFF2680	0.43	-0.7
2,701,001	+		GFF2680	0.44	-0.3
2,701,001	+		GFF2680	0.44	+1.4
2,701,001	+		GFF2680	0.44	+0.3
2,701,009	-		GFF2680	0.44	-0.3
2,701,009	-		GFF2680	0.44	-1.1
2,701,009	-		GFF2680	0.44	+1.2
2,701,009	-		GFF2680	0.44	+0.2
2,701,009	-		GFF2680	0.44	-1.5
2,701,011	+		GFF2680	0.44	+1.0
2,701,020	+		GFF2680	0.45	-0.4
2,701,032	+		GFF2680	0.45	+0.0
2,701,050	-		GFF2680	0.46	-0.5
2,701,069	+		GFF2680	0.47	-0.6
2,701,070	+		GFF2680	0.47	-0.6
2,701,070	+		GFF2680	0.47	-0.5
2,701,098	-		GFF2680	0.49	-1.3
2,701,098	-		GFF2680	0.49	-0.3
2,701,134	+		GFF2680	0.51	-0.1
2,701,134	+		GFF2680	0.51	-1.5
2,701,134	+		GFF2680	0.51	+0.0
2,701,134	+		GFF2680	0.51	-0.5
2,701,134	+		GFF2680	0.51	+0.1
2,701,134	+		GFF2680	0.51	-1.6
2,701,134	+		GFF2680	0.51	+0.1
2,701,134	+		GFF2680	0.51	-0.6
2,701,134	+		GFF2680	0.51	-1.6
2,701,134	+		GFF2680	0.51	+0.0
2,701,134	+		GFF2680	0.51	-0.7
2,701,134	+		GFF2680	0.51	-0.3
2,701,134	+		GFF2680	0.51	-0.3
2,701,134	+		GFF2680	0.51	-0.1
2,701,134	+		GFF2680	0.51	-1.0
2,701,134	+		GFF2680	0.51	+0.1
2,701,134	+		GFF2680	0.51	+0.7
2,701,134	+		GFF2680	0.51	-2.7
2,701,134	+		GFF2680	0.51	+0.7
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