Strain Fitness in Sphingobium sp. HT1-2 around GFF268

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF265 and GFF266 are separated by 19 nucleotidesGFF266 and GFF267 are separated by 86 nucleotidesGFF267 and GFF268 are separated by 174 nucleotidesGFF268 and GFF269 are separated by 645 nucleotides GFF265 - hypothetical protein, at 262,677 to 263,429 GFF265 GFF266 - hypothetical protein, at 263,449 to 263,685 GFF266 GFF267 - hypothetical protein, at 263,772 to 263,903 GFF267 GFF268 - hypothetical protein, at 264,078 to 264,533 GFF268 GFF269 - hypothetical protein, at 265,179 to 265,736 GFF269 Position (kb) 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 263.098 kb on + strand, within GFF265at 263.118 kb on + strand, within GFF265at 263.131 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.169 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.294 kb on + strand, within GFF265at 263.294 kb on + strand, within GFF265at 263.323 kb on - strand, within GFF265at 263.324 kb on + strand, within GFF265at 263.329 kb on + strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.372 kb on - strandat 263.389 kb on + strandat 263.394 kb on + strandat 263.399 kb on + strandat 263.422 kb on - strandat 263.424 kb on + strandat 263.446 kb on + strandat 263.470 kb on + strandat 263.470 kb on + strandat 263.478 kb on - strand, within GFF266at 263.478 kb on - strand, within GFF266at 263.478 kb on - strand, within GFF266at 263.485 kb on - strand, within GFF266at 263.509 kb on - strand, within GFF266at 263.525 kb on - strand, within GFF266at 263.562 kb on - strand, within GFF266at 263.568 kb on + strand, within GFF266at 263.574 kb on - strand, within GFF266at 263.581 kb on - strand, within GFF266at 263.592 kb on + strand, within GFF266at 263.600 kb on - strand, within GFF266at 263.600 kb on - strand, within GFF266at 263.615 kb on + strand, within GFF266at 263.615 kb on + strand, within GFF266at 263.623 kb on - strand, within GFF266at 263.623 kb on - strand, within GFF266at 263.628 kb on - strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.649 kb on - strand, within GFF266at 263.692 kb on + strandat 263.695 kb on + strandat 263.695 kb on + strandat 263.700 kb on + strandat 263.703 kb on - strandat 263.703 kb on - strandat 263.703 kb on - strandat 263.741 kb on + strandat 263.750 kb on - strandat 263.750 kb on - strandat 263.755 kb on - strandat 263.760 kb on - strandat 263.783 kb on - strandat 263.819 kb on - strand, within GFF267at 263.887 kb on - strand, within GFF267at 263.889 kb on + strand, within GFF267at 263.902 kb on + strandat 263.909 kb on + strandat 263.910 kb on - strandat 263.910 kb on - strandat 263.919 kb on - strandat 263.940 kb on - strandat 263.940 kb on - strandat 263.983 kb on + strandat 263.996 kb on - strandat 264.108 kb on + strandat 264.129 kb on + strand, within GFF268at 264.141 kb on - strand, within GFF268at 264.187 kb on - strand, within GFF268at 264.213 kb on + strand, within GFF268at 264.275 kb on - strand, within GFF268at 264.286 kb on + strand, within GFF268at 264.294 kb on - strand, within GFF268at 264.308 kb on + strand, within GFF268at 264.374 kb on + strand, within GFF268at 264.421 kb on + strand, within GFF268at 264.421 kb on + strand, within GFF268at 264.426 kb on + strand, within GFF268at 264.429 kb on - strand, within GFF268at 264.436 kb on + strand, within GFF268at 264.497 kb on + strandat 264.535 kb on + strandat 264.577 kb on - strandat 264.656 kb on + strandat 264.656 kb on + strandat 264.676 kb on + strandat 264.821 kb on + strandat 264.870 kb on + strandat 264.933 kb on - strandat 264.938 kb on + strandat 264.938 kb on + strandat 264.946 kb on - strandat 264.946 kb on - strandat 264.958 kb on + strandat 264.958 kb on + strandat 264.966 kb on - strandat 264.966 kb on - strandat 264.966 kb on - strandat 264.966 kb on - strandat 264.966 kb on - strandat 264.966 kb on - strandat 265.011 kb on + strandat 265.036 kb on - strandat 265.038 kb on + strandat 265.046 kb on - strandat 265.068 kb on - strandat 265.071 kb on + strandat 265.078 kb on - strandat 265.089 kb on - strandat 265.092 kb on + strandat 265.202 kb on + strandat 265.202 kb on + strandat 265.202 kb on + strandat 265.209 kb on + strandat 265.209 kb on + strandat 265.217 kb on - strandat 265.246 kb on + strand, within GFF269at 265.246 kb on - strand, within GFF269at 265.249 kb on + strand, within GFF269at 265.256 kb on - strand, within GFF269at 265.256 kb on - strand, within GFF269at 265.287 kb on + strand, within GFF269at 265.287 kb on + strand, within GFF269at 265.288 kb on + strand, within GFF269at 265.288 kb on + strand, within GFF269at 265.288 kb on + strand, within GFF269at 265.289 kb on + strand, within GFF269at 265.289 kb on + strand, within GFF269at 265.295 kb on - strand, within GFF269at 265.295 kb on - strand, within GFF269at 265.297 kb on + strand, within GFF269at 265.299 kb on + strand, within GFF269at 265.300 kb on - strand, within GFF269at 265.311 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.321 kb on + strand, within GFF269at 265.324 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.329 kb on - strand, within GFF269at 265.338 kb on - strand, within GFF269at 265.338 kb on - strand, within GFF269at 265.338 kb on - strand, within GFF269at 265.338 kb on - strand, within GFF269at 265.341 kb on + strand, within GFF269at 265.387 kb on - strand, within GFF269at 265.387 kb on - strand, within GFF269at 265.419 kb on + strand, within GFF269at 265.419 kb on + strand, within GFF269at 265.427 kb on - strand, within GFF269at 265.433 kb on - strand, within GFF269at 265.451 kb on + strand, within GFF269at 265.451 kb on + strand, within GFF269at 265.452 kb on - strand, within GFF269at 265.469 kb on - strand, within GFF269at 265.472 kb on + strand, within GFF269at 265.522 kb on + strand, within GFF269

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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263,098 + GFF265 0.56 +0.8
263,118 + GFF265 0.59 +1.4
263,131 + GFF265 0.60 -0.3
263,161 + GFF265 0.64 -0.4
263,161 + GFF265 0.64 +0.3
263,161 + GFF265 0.64 +0.1
263,169 - GFF265 0.65 -0.1
263,186 - GFF265 0.68 +1.9
263,186 - GFF265 0.68 -1.3
263,186 - GFF265 0.68 +1.0
263,294 + GFF265 0.82 +0.5
263,294 + GFF265 0.82 -0.5
263,323 - GFF265 0.86 +0.1
263,324 + GFF265 0.86 -1.7
263,329 + GFF265 0.87 +0.2
263,337 - GFF265 0.88 +0.0
263,337 - GFF265 0.88 +0.2
263,337 - GFF265 0.88 +0.6
263,372 - +2.2
263,389 + +0.7
263,394 + +0.7
263,399 + -0.3
263,422 - -0.4
263,424 + +0.8
263,446 + +1.1
263,470 + +1.8
263,470 + -0.5
263,478 - GFF266 0.12 -0.2
263,478 - GFF266 0.12 +0.3
263,478 - GFF266 0.12 +0.8
263,485 - GFF266 0.15 +0.2
263,509 - GFF266 0.25 -0.4
263,525 - GFF266 0.32 +0.2
263,562 - GFF266 0.48 -0.1
263,568 + GFF266 0.50 -2.0
263,574 - GFF266 0.53 +0.5
263,581 - GFF266 0.56 +0.1
263,592 + GFF266 0.60 -1.2
263,600 - GFF266 0.64 +0.8
263,600 - GFF266 0.64 -0.1
263,615 + GFF266 0.70 -0.2
263,615 + GFF266 0.70 -1.4
263,623 - GFF266 0.73 +2.2
263,623 - GFF266 0.73 +0.6
263,628 - GFF266 0.76 -1.0
263,643 + GFF266 0.82 -0.5
263,643 + GFF266 0.82 +0.3
263,643 + GFF266 0.82 +0.9
263,649 - GFF266 0.84 +0.3
263,692 + +2.7
263,695 + -0.7
263,695 + +0.6
263,700 + +0.5
263,703 - -0.8
263,703 - -0.3
263,703 - -1.9
263,741 + +0.2
263,750 - -0.2
263,750 - +0.2
263,755 - -0.4
263,760 - -0.3
263,783 - +0.2
263,819 - GFF267 0.36 +0.4
263,887 - GFF267 0.87 +0.8
263,889 + GFF267 0.89 +0.4
263,902 + -0.3
263,909 + -0.0
263,910 - -1.2
263,910 - -0.9
263,919 - +0.2
263,940 - +0.9
263,940 - +0.1
263,983 + +0.6
263,996 - +1.7
264,108 + +0.2
264,129 + GFF268 0.11 -0.9
264,141 - GFF268 0.14 +0.2
264,187 - GFF268 0.24 +0.4
264,213 + GFF268 0.30 -0.3
264,275 - GFF268 0.43 -1.1
264,286 + GFF268 0.46 +1.1
264,294 - GFF268 0.47 +0.1
264,308 + GFF268 0.50 -0.2
264,374 + GFF268 0.65 +1.8
264,421 + GFF268 0.75 +0.2
264,421 + GFF268 0.75 -1.3
264,426 + GFF268 0.76 +1.1
264,429 - GFF268 0.77 -0.4
264,436 + GFF268 0.79 +0.7
264,497 + +1.1
264,535 + -0.1
264,577 - +1.2
264,656 + +0.4
264,656 + -0.9
264,676 + -0.7
264,821 + +2.0
264,870 + +1.0
264,933 - +1.3
264,938 + +1.1
264,938 + -0.1
264,946 - +0.5
264,946 - +0.9
264,958 + -0.1
264,958 + +0.3
264,966 - -0.9
264,966 - -1.6
264,966 - +0.1
264,966 - -0.4
264,966 - +0.0
264,966 - -0.1
265,011 + -0.5
265,036 - +0.2
265,038 + -0.8
265,046 - -0.8
265,068 - -0.2
265,071 + -0.8
265,078 - +0.2
265,089 - -0.3
265,092 + +0.5
265,202 + -0.1
265,202 + +0.8
265,202 + +0.1
265,209 + +0.4
265,209 + -1.6
265,217 - +0.8
265,246 + GFF269 0.12 -1.0
265,246 - GFF269 0.12 +0.2
265,249 + GFF269 0.13 -0.1
265,256 - GFF269 0.14 +0.9
265,256 - GFF269 0.14 -0.1
265,287 + GFF269 0.19 +0.1
265,287 + GFF269 0.19 +0.5
265,288 + GFF269 0.20 +1.2
265,288 + GFF269 0.20 -1.1
265,288 + GFF269 0.20 -0.5
265,289 + GFF269 0.20 +0.6
265,289 + GFF269 0.20 +0.6
265,295 - GFF269 0.21 -1.1
265,295 - GFF269 0.21 +0.2
265,297 + GFF269 0.21 +1.3
265,299 + GFF269 0.22 +0.5
265,300 - GFF269 0.22 +2.0
265,311 + GFF269 0.24 -0.1
265,321 + GFF269 0.25 -0.9
265,321 + GFF269 0.25 -0.5
265,321 + GFF269 0.25 +0.2
265,321 + GFF269 0.25 +0.2
265,321 + GFF269 0.25 -0.7
265,321 + GFF269 0.25 +0.2
265,321 + GFF269 0.25 -0.6
265,324 - GFF269 0.26 +0.2
265,329 - GFF269 0.27 -1.3
265,329 - GFF269 0.27 -0.6
265,329 - GFF269 0.27 +1.3
265,329 - GFF269 0.27 -0.1
265,329 - GFF269 0.27 +0.7
265,329 - GFF269 0.27 -1.2
265,329 - GFF269 0.27 +0.6
265,329 - GFF269 0.27 +0.3
265,338 - GFF269 0.28 -0.7
265,338 - GFF269 0.28 -0.8
265,338 - GFF269 0.28 +0.7
265,338 - GFF269 0.28 -0.2
265,341 + GFF269 0.29 +0.0
265,387 - GFF269 0.37 -0.8
265,387 - GFF269 0.37 -0.4
265,419 + GFF269 0.43 +0.7
265,419 + GFF269 0.43 -0.6
265,427 - GFF269 0.44 +1.6
265,433 - GFF269 0.46 +1.4
265,451 + GFF269 0.49 +0.3
265,451 + GFF269 0.49 -0.6
265,452 - GFF269 0.49 -1.4
265,469 - GFF269 0.52 -0.3
265,472 + GFF269 0.53 -0.2
265,522 + GFF269 0.61 +0.2

Or see this region's nucleotide sequence